genome.fa.s2484.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002484.1 Hibiscus syriacus cultivar Beakdansim tig00005070_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57058

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
918--951	13	2.7	13	86	4	52	47	11	5	35	1.65
2725--2762	20	1.9	20	94	0	67	31	31	15	21	1.94
10864--10899	17	2.1	17	100	0	72	33	11	5	50	1.61
13051--13170	48	2.5	48	84	2	161	15	15	31	37	1.89
17683--17739	27	2.2	25	79	17	62	52	1	1	43	1.21
23274--23331	31	1.9	31	85	3	82	24	15	6	53	1.66
24791--24842	21	2.5	21	81	3	61	38	19	25	17	1.93
24831--24965	20	6.7	20	81	7	130	33	24	18	23	1.97
24828--24959	61	2.2	61	88	0	192	35	24	17	22	1.95
25125--25168	22	2.0	22	95	0	79	20	45	15	18	1.85
25412--25455	20	2.2	20	87	0	61	11	18	20	50	1.77
25592--25646	25	2.2	24	78	15	58	20	9	18	52	1.71
26774--26818	18	2.5	18	88	0	72	26	44	15	13	1.83
27300--27345	20	2.3	20	84	0	56	36	23	21	17	1.94
27311--27366	20	2.8	20	81	2	69	39	21	23	16	1.92
27355--27411	14	3.7	14	75	20	60	50	22	15	10	1.74
27339--27430	33	2.8	33	98	0	175	46	20	19	13	1.83
27339--27435	19	5.6	19	71	22	97	45	20	20	13	1.85
27431--27479	18	2.7	18	80	3	62	8	14	26	51	1.70
27449--27539	33	2.8	33	88	1	130	13	16	21	48	1.80
27449--27581	20	7.5	18	70	22	68	13	18	22	45	1.85
27524--27579	20	2.8	19	86	7	76	16	25	23	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34997--35035	14	2.8	14	84	0	51	35	0	17	46	1.49
35461--35552	20	4.6	20	73	2	76	20	18	21	39	1.93
35537--35588	20	2.5	21	81	3	61	23	23	15	38	1.92
35602--35651	20	2.5	20	96	0	91	32	26	16	26	1.96
36400--36446	24	2.0	24	91	0	76	23	17	21	38	1.93
38122--38248	33	3.8	33	86	4	193	43	19	22	14	1.88
38123--38254	66	2.0	66	95	0	237	42	19	21	15	1.89
38277--38323	19	2.5	19	96	0	85	12	21	21	44	1.85
38430--38466	14	2.6	14	91	0	65	45	24	0	29	1.53
40163--40347	91	2.0	90	90	6	291	47	18	11	21	1.81
42065--42120	14	3.6	14	74	21	58	39	25	25	10	1.87
42042--42139	33	2.9	33	93	1	160	41	23	23	11	1.86
42078--42194	52	2.2	52	93	0	198	44	22	22	11	1.84
42119--42189	33	2.2	33	89	5	108	47	21	21	9	1.79
42016--42194	19	10.1	19	70	21	129	44	20	22	11	1.84
42190--42234	19	2.4	19	92	0	72	8	15	26	48	1.74
42790--42861	20	3.5	20	83	5	74	20	20	22	36	1.96
42851--42923	21	3.5	21	72	10	69	35	17	21	24	1.95
42915--42984	20	3.5	20	98	0	131	24	18	27	30	1.98
42973--43024	20	2.5	21	87	3	70	21	23	17	38	1.93
42788--43086	143	2.1	142	81	10	342	28	18	22	30	1.97
43014--43066	21	2.5	22	81	6	74	33	18	26	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48301--48396	23	4.2	23	90	0	138	41	20	10	27	1.85

Tables:   1

The End!