Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002485.1 Hibiscus syriacus cultivar Beakdansim tig00005071_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244926
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 2
Found at i:355 original size:44 final size:44
Alignment explanation
Indices: 277--367 Score: 157
Period size: 44 Copynumber: 2.0 Consensus size: 44
267 GAGAAAAGAT
277 TTATCTTTTTCATTGAAAAATATAGCAAATTAATCATCATAGCCAC
1 TTATCTTTTTCATTG-AAAATATAGCAAATTAATCATCATAG-CAC
323 TTATCTTTTTCATTG-AAATATAGCAAATTAATCATCATAGCAC
1 TTATCTTTTTCATTGAAAATATAGCAAATTAATCATCATAGCAC
366 TT
1 TT
368 GATAAATTAA
Statistics
Matches: 45, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
43 5 0.11
44 25 0.56
46 15 0.33
ACGTcount: A:0.37, C:0.16, G:0.07, T:0.40
Consensus pattern (44 bp):
TTATCTTTTTCATTGAAAATATAGCAAATTAATCATCATAGCAC
Found at i:2307 original size:33 final size:32
Alignment explanation
Indices: 2263--2326 Score: 119
Period size: 33 Copynumber: 2.0 Consensus size: 32
2253 ACCCAGCAAG
2263 AGCTCAATTGAGGTAACTGTTAACTTTCTCTA
1 AGCTCAATTGAGGTAACTGTTAACTTTCTCTA
2295 AGCTCAAATTGAGGTAACTGTTAACTTTCTCT
1 AGCTC-AATTGAGGTAACTGTTAACTTTCTCT
2327 GAACAAGGTT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 5 0.16
33 26 0.84
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.38
Consensus pattern (32 bp):
AGCTCAATTGAGGTAACTGTTAACTTTCTCTA
Found at i:7196 original size:21 final size:21
Alignment explanation
Indices: 7170--7214 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
7160 GATTTCTGGG
* *
7170 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
7191 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
7212 CAA
1 CAA
7215 ACGAACAACA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:8052 original size:31 final size:31
Alignment explanation
Indices: 8014--8138 Score: 198
Period size: 31 Copynumber: 4.0 Consensus size: 31
8004 AGGGTCGAGG
8014 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
8045 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
*
8076 GTTTACCTATGTCCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
* * *
8107 GATTACCTAGGTTCTTCGGAATC-TATGGACT
1 GTTTACCTATGTTCTTCGGGA-CATATGGACT
8138 G
1 G
8139 GTCCTTCGGG
Statistics
Matches: 88, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
31 87 0.99
32 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.37
Consensus pattern (31 bp):
GTTTACCTATGTTCTTCGGGACATATGGACT
Found at i:13596 original size:21 final size:22
Alignment explanation
Indices: 13570--13612 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
13560 TGTTATAGGG
13570 GTATCGATACCC-TACTACAGT
1 GTATCGATACCCTTACTACAGT
*
13591 GTATCGATACCCTTGCTACAGT
1 GTATCGATACCCTTACTACAGT
13613 AATTTCGGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (22 bp):
GTATCGATACCCTTACTACAGT
Found at i:14503 original size:22 final size:22
Alignment explanation
Indices: 14464--14514 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
14454 GGCATGTGAA
* *
14464 ATTTTTCCCGAATAACCTATGT
1 ATTTGTCCCGAAGAACCTATGT
* *
14486 ATTTGTCCCGAAGGACCTCTGT
1 ATTTGTCCCGAAGAACCTATGT
14508 ATATTGT
1 AT-TTGT
14515 ATATGTCTCG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
22 20 0.83
23 4 0.17
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.39
Consensus pattern (22 bp):
ATTTGTCCCGAAGAACCTATGT
Found at i:16959 original size:19 final size:19
Alignment explanation
Indices: 16900--16949 Score: 91
Period size: 19 Copynumber: 2.6 Consensus size: 19
16890 TTCCCTTCAG
*
16900 GGTATCGATACCTCCTCAA
1 GGTAACGATACCTCCTCAA
16919 GGTAACGATACCTCCTCAA
1 GGTAACGATACCTCCTCAA
16938 GGTAACGATACC
1 GGTAACGATACC
16950 ATTCCGAGGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (19 bp):
GGTAACGATACCTCCTCAA
Found at i:19094 original size:536 final size:536
Alignment explanation
Indices: 18065--19113 Score: 1640
Period size: 536 Copynumber: 2.0 Consensus size: 536
18055 CAATGGCTCT
* * * * * *
18065 AAAACATCTCCAACGGCTAGAAACGACCACAAACTCATTCCAACATGTAAAAGCAAGTTGATGAC
1 AAAACATCTCCAACGGCTAAAAAAGACCACAAACTCATTCAAACATATAAAAACAAGTTGAGGAC
* * *
18130 ACTTGAAGAAGGTTAATGAACACCTATCCAAACAATCAAACACAAGAGAAGATTTTTTCATTCTT
66 ACTTGAAGAAGGTTAATAAACACCTATCCAAACAATCAAACACAAGAGAAGAATTTGTCATTCTT
18195 ATTTTCCTTTCTCTTGTAAATATTAGTGTTTTAGTGAGCTCAACTTTTATAAACACATTCCTTTG
131 ATTTTCCTTTCTCTTGTAAATATTAGTGTTTTAGTGAGCTCAACTTTTATAAACACATTCCTTTG
*
18260 AGATGTTTTCTTGTTTACATTTCTTATCCTTTGTGTAAAGAGAATTGGTTCTAGATTAGCCTTTG
196 AGAGGTTTTCTTGTTTACATTTCTTATCCTTTGTGTAAAGAGAATTGGTTCTAGATTAGCCTTTG
* * * *
18325 AAAAGTTAGGGAGTTGTGAAGGTTATCTCTTGATTCTGTAAAAAGAAAGAACAAATTAGTGAATT
261 AAAAGCTAGGGAGTTGTGAAGGTTATCTCTTGATCCAGTAAAAAGAAACAACAAATTAGTGAATT
* * * * *
18390 TGTTGAAAATCCTACGTGAGGAGCTTAGGTAGAGGATGTAGATTTGGTTGAAAAGTTGAACCACT
326 TGTTGAAAAGCCTAAGTGAGGACCTTAGGTAGAGGATGTAGACTTGGTTGAAAAGTCGAACCACT
**
18455 ATAAATCCTTGTGCAAATTATCTATATTTTATACTCCTTACTCCCTAAACTCAAAAAGTCAATTC
391 ATAAATCCTTGTGCAAATTATCTATATTTTATACTCCTTACTCCCTAAACTCAAAAAACCAATTC
*
18520 ACCCCATTGTGGCAAATCATTCGGTTGATCATTTAAGCTTCATTTGAAATACCAACAATTGGTAT
456 ACCCCATTGTGGCAAATCATTCGGTTAATCATTTAAGCTTCATTTGAAATACCAACAATTGGTAT
18585 CAGCCCTAACGACTCC
521 CAGCCCTAACGACTCC
*
18601 AAAACATC-CCAAACGGCTAAAAATAG-CCACAAACTCATTCAAATATATAAAAACAAGTTGAGG
1 AAAACATCTCC-AACGGCTAAAAA-AGACCACAAACTCATTCAAACATATAAAAACAAGTTGAGG
* *
18664 ACACTTGAATAAGGTTAATAAACACCTATCCAAGCAATCAAACACAAGAGAAGAATTTGTCATTC
64 ACACTTGAAGAAGGTTAATAAACACCTATCCAAACAATCAAACACAAGAGAAGAATTTGTCATTC
* * * * *
18729 TTATTTTCCTTTGTCTTGTAAATATTAGTGTTTTAGTGAGTTTAACTTTTGTAAACACCTTCCTT
129 TTATTTTCCTTTCTCTTGTAAATATTAGTGTTTTAGTGAGCTCAACTTTTATAAACACATTCCTT
* * *
18794 TGAGAGGTTTTCTTGTTTACATTTCTTATCCTTTGTGTAAAGGGGATTGGTTCTAGCTTAGCCTT
194 TGAGAGGTTTTCTTGTTTACATTTCTTATCCTTTGTGTAAAGAGAATTGGTTCTAGATTAGCCTT
*
18859 TGAAAAGCTAGGGAGTTGTGAATGTTATCTCTTGATCCAGTAAAAAGAAACAACAAATTAGTGAA
259 TGAAAAGCTAGGGAGTTGTGAAGGTTATCTCTTGATCCAGTAAAAAGAAACAACAAATTAGTGAA
* * *
18924 TTTGTT-AGAAAGCCTAAGTGATGACCTTAGGTAGTGGATGTAGACTTGGTTGAGAAGTCGAACC
324 TTTGTTGA-AAAGCCTAAGTGAGGACCTTAGGTAGAGGATGTAGACTTGGTTGAAAAGTCGAACC
* *
18988 ACTATAAATCCTTGTGGAAATTGTCTATATTTTTATACTCCTTACTCCCTAAACTCAAAAAACCA
388 ACTATAAATCCTTGTGCAAATTATCTATA-TTTTATACTCCTTACTCCCTAAACTCAAAAAACCA
* * *
19053 ATTCACCCTATCT-TGGCAAATCATTCGGTTAATCA-TTAAGCTTTATTTGAAATCCCAACAA
452 ATTCACCCCAT-TGTGGCAAATCATTCGGTTAATCATTTAAGCTTCATTTGAAATACCAACAA
19114 GTTCCCTTTT
Statistics
Matches: 466, Mismatches: 42, Indels: 10
0.90 0.08 0.02
Matches are distributed among these distances:
535 3 0.01
536 397 0.85
537 65 0.14
538 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Consensus pattern (536 bp):
AAAACATCTCCAACGGCTAAAAAAGACCACAAACTCATTCAAACATATAAAAACAAGTTGAGGAC
ACTTGAAGAAGGTTAATAAACACCTATCCAAACAATCAAACACAAGAGAAGAATTTGTCATTCTT
ATTTTCCTTTCTCTTGTAAATATTAGTGTTTTAGTGAGCTCAACTTTTATAAACACATTCCTTTG
AGAGGTTTTCTTGTTTACATTTCTTATCCTTTGTGTAAAGAGAATTGGTTCTAGATTAGCCTTTG
AAAAGCTAGGGAGTTGTGAAGGTTATCTCTTGATCCAGTAAAAAGAAACAACAAATTAGTGAATT
TGTTGAAAAGCCTAAGTGAGGACCTTAGGTAGAGGATGTAGACTTGGTTGAAAAGTCGAACCACT
ATAAATCCTTGTGCAAATTATCTATATTTTATACTCCTTACTCCCTAAACTCAAAAAACCAATTC
ACCCCATTGTGGCAAATCATTCGGTTAATCATTTAAGCTTCATTTGAAATACCAACAATTGGTAT
CAGCCCTAACGACTCC
Found at i:20618 original size:2 final size:2
Alignment explanation
Indices: 20611--20661 Score: 93
Period size: 2 Copynumber: 25.5 Consensus size: 2
20601 TCGAGCCTCA
*
20611 TC TC TC TC TC TC TC CC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
20653 TC TC TC TC T
1 TC TC TC TC T
20662 ATATATATAT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
TC
Found at i:20666 original size:2 final size:2
Alignment explanation
Indices: 20661--20747 Score: 174
Period size: 2 Copynumber: 43.5 Consensus size: 2
20651 TCTCTCTCTC
20661 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
20703 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
20745 TA T
1 TA T
20748 TTCTTCTCAA
Statistics
Matches: 85, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 85 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:21714 original size:28 final size:28
Alignment explanation
Indices: 21658--21714 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
21648 ATCCGTCGTT
* *
21658 GCCACCCTCTTCGGCCATGACCGCCGTC
1 GCCACCCTCTCCGGCCATGACCACCGTC
* *
21686 GCCACCCTGTCCGGCCATGACCACTGTC
1 GCCACCCTCTCCGGCCATGACCACCGTC
21714 G
1 G
21715 TCGACATAGT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.12, C:0.47, G:0.23, T:0.18
Consensus pattern (28 bp):
GCCACCCTCTCCGGCCATGACCACCGTC
Found at i:22681 original size:29 final size:29
Alignment explanation
Indices: 22630--22717 Score: 122
Period size: 29 Copynumber: 3.0 Consensus size: 29
22620 CTTCCCAGCA
* *
22630 TAGGTCGCCATGCCCTCCGGGCGACCTTG
1 TAGGTCGCCATGCACGCCGGGCGACCTTG
* * *
22659 TAGGTCGCCATGCACGCCAGGCGACATGG
1 TAGGTCGCCATGCACGCCGGGCGACCTTG
*
22688 TAGGTCGCCATGCACGCTGGGCGACCTTG
1 TAGGTCGCCATGCACGCCGGGCGACCTTG
22717 T
1 T
22718 CCTGCGCCTT
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 50 1.00
ACGTcount: A:0.15, C:0.33, G:0.33, T:0.19
Consensus pattern (29 bp):
TAGGTCGCCATGCACGCCGGGCGACCTTG
Found at i:24552 original size:80 final size:80
Alignment explanation
Indices: 24406--24553 Score: 208
Period size: 80 Copynumber: 1.9 Consensus size: 80
24396 AGAAAGAATT
* ** * ** * *
24406 ACATTTTAGTTAGCGTCCAATATTAACATTTCTAGTAGAAAAAAATAATATTTTAGGTAGTGTTT
1 ACATTTTAGGTAGCACCCAATATTAACATTTCGAGTAGAAAAAAATAATATTTTAGACAATATTT
24471 TACATGAAATGTTAA
66 TACATGAAATGTTAA
24486 ACATTTTAGGTAGCACCCAATATTAACATTTCCGA-TAGAAAAAAATAATATTTTAGACAATATT
1 ACATTTTAGGTAGCACCCAATATTAACATTT-CGAGTAGAAAAAAATAATATTTTAGACAATATT
24550 TTAC
65 TTAC
24554 CGAAAATATT
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
80 57 0.97
81 2 0.03
ACGTcount: A:0.41, C:0.11, G:0.11, T:0.36
Consensus pattern (80 bp):
ACATTTTAGGTAGCACCCAATATTAACATTTCGAGTAGAAAAAAATAATATTTTAGACAATATTT
TACATGAAATGTTAA
Found at i:47416 original size:24 final size:24
Alignment explanation
Indices: 47399--47523 Score: 144
Period size: 24 Copynumber: 5.2 Consensus size: 24
47389 ATCAAAACAT
* *
47399 AATCCAGGTCAGGTATCATATCAA
1 AATCCAGGTCAAGTATCAGATCAA
*
47423 AATCCAGGTCAAGTAACAGATCAA
1 AATCCAGGTCAAGTATCAGATCAA
* *
47447 AATCCAAGTCAAGTATCAGATCAG
1 AATCCAGGTCAAGTATCAGATCAA
* * *
47471 AATCCATGTC-AGATATCATATCAG
1 AATCCAGGTCAAG-TATCAGATCAA
*
47495 AATCCATGTCAAGTATCAGATCATA
1 AATCCAGGTCAAGTATCAGATCA-A
47520 AATC
1 AATC
47524 AAATCGAAAA
Statistics
Matches: 88, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
23 2 0.02
24 80 0.91
25 6 0.07
ACGTcount: A:0.41, C:0.21, G:0.14, T:0.24
Consensus pattern (24 bp):
AATCCAGGTCAAGTATCAGATCAA
Found at i:47537 original size:72 final size:72
Alignment explanation
Indices: 47399--47537 Score: 183
Period size: 72 Copynumber: 1.9 Consensus size: 72
47389 ATCAAAACAT
* * *
47399 AATCCAGGTCAGGTATCATATCAAAATCCAGGTCAAGTAACAGATCAAAATCCAAGTCAAGTATC
1 AATCCAGGTCAGATATCATATCAAAATCCAGGTCAAGTAACAGATCAAAATCCAAATCAAGAATC
47464 AGATCAG
66 AGATCAG
* * * *
47471 AATCCATGTCAGATATCATATCAGAATCCATGTCAAGTATCAGATCATAAAT-CAAATCGAA-AA
1 AATCCAGGTCAGATATCATATCAAAATCCAGGTCAAGTAACAGATCA-AAATCCAAATC-AAGAA
47534 TCAG
64 TCAG
47538 GTAAAATATT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
72 52 0.90
73 6 0.10
ACGTcount: A:0.42, C:0.20, G:0.14, T:0.23
Consensus pattern (72 bp):
AATCCAGGTCAGATATCATATCAAAATCCAGGTCAAGTAACAGATCAAAATCCAAATCAAGAATC
AGATCAG
Found at i:51619 original size:18 final size:18
Alignment explanation
Indices: 51596--51632 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
51586 ACTATAAAAT
51596 GCCTCTGGAAAATACTTG
1 GCCTCTGGAAAATACTTG
51614 GCCTCTGGAAAATACTTG
1 GCCTCTGGAAAATACTTG
51632 G
1 G
51633 ATACTCTAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (18 bp):
GCCTCTGGAAAATACTTG
Found at i:59939 original size:2 final size:2
Alignment explanation
Indices: 59932--59975 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
59922 CCAAGCGACA
59932 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
59974 AT
1 AT
59976 GAGAAAATAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:60126 original size:40 final size:40
Alignment explanation
Indices: 60082--60164 Score: 96
Period size: 40 Copynumber: 2.1 Consensus size: 40
60072 AACTCCAATT
* * *
60082 TCGCAACTC-AATTTCCAAATTCGTAACGCGAATATGTAAA
1 TCGCAACGCGAATATCCAAA-TCGCAACGCGAATATGTAAA
** *
60122 TCGCAACGCGAATATGTAAATCGCAACGCGAATCTGTAAA
1 TCGCAACGCGAATATCCAAATCGCAACGCGAATATGTAAA
60162 TCG
1 TCG
60165 TAACACAGAA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
40 29 0.81
41 7 0.19
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.24
Consensus pattern (40 bp):
TCGCAACGCGAATATCCAAATCGCAACGCGAATATGTAAA
Found at i:60131 original size:20 final size:20
Alignment explanation
Indices: 60106--60164 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
60096 CCAAATTCGT
60106 AACGCGAATATGTAAATCGC
1 AACGCGAATATGTAAATCGC
60126 AACGCGAATATGTAAATCGC
1 AACGCGAATATGTAAATCGC
*
60146 AACGCGAATCTGTAAATCG
1 AACGCGAATATGTAAATCG
60165 TAACACAGAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.20
Consensus pattern (20 bp):
AACGCGAATATGTAAATCGC
Found at i:60191 original size:20 final size:20
Alignment explanation
Indices: 60166--60405 Score: 240
Period size: 20 Copynumber: 11.9 Consensus size: 20
60156 TGTAAATCGT
* *
60166 AACACAGAATTCAAATTTGC
1 AACACAGAAGTCAAATTCGC
* *
60186 AACACATAAGTCAAATTTGC
1 AACACAGAAGTCAAATTCGC
*
60206 AACAC-GATAGTCCAATTCGC
1 AACACAGA-AGTCAAATTCGC
* *
60226 TACACTGAAGTCAAATTCGC
1 AACACAGAAGTCAAATTCGC
* *
60246 AACGC-GAA-TCTATAAATCGC
1 AACACAGAAGTC-A-AATTCGC
60266 AACACAGAAGTCAAATTCGC
1 AACACAGAAGTCAAATTCGC
60286 AACACAGAAGTCAAATTCGC
1 AACACAGAAGTCAAATTCGC
*
60306 AACGC-GATAGTCAAATTCGC
1 AACACAGA-AGTCAAATTCGC
* *
60326 AACACTGAATTTCAAATTCGC
1 AACACAGAA-GTCAAATTCGC
*
60347 AACACAAAAGTCAAATTCGC
1 AACACAGAAGTCAAATTCGC
*
60367 AACGC-GATAGTCAAATTCGC
1 AACACAGA-AGTCAAATTCGC
*
60387 AACGC-GAAAGTCAAATTCG
1 AACACAG-AAGTCAAATTCG
60406 TAAAGCGCGT
Statistics
Matches: 189, Mismatches: 20, Indels: 22
0.82 0.09 0.10
Matches are distributed among these distances:
18 2 0.01
19 8 0.04
20 151 0.80
21 26 0.14
22 2 0.01
ACGTcount: A:0.41, C:0.24, G:0.15, T:0.20
Consensus pattern (20 bp):
AACACAGAAGTCAAATTCGC
Found at i:60252 original size:100 final size:101
Alignment explanation
Indices: 60135--60405 Score: 322
Period size: 100 Copynumber: 2.7 Consensus size: 101
60125 CAACGCGAAT
* * * * *
60135 ATGT-AAA-TCGCAACGCGAATCTGTAAATCGTAACACAGAATTCAAATTTGCAACACATAAGTC
1 ATGTCAAATTCGCAACGCGAATCTATAAATCGCAACACAGAAGTCAAATTCGCAACACAGAAGTC
* * *
60198 AAATTTGCAACACGATAGTCCAATTCGCTACACTGA
66 AAATTCGCAACACGATAGTCAAATTCGCAACACTGA
60234 A-GTCAAATTCGCAACGCGAATCTATAAATCGCAACACAGAAGTCAAATTCGCAACACAGAAGTC
1 ATGTCAAATTCGCAACGCGAATCTATAAATCGCAACACAGAAGTCAAATTCGCAACACAGAAGTC
*
60298 AAATTCGCAACGCGATAGTCAAATTCGCAACACTGA
66 AAATTCGCAACACGATAGTCAAATTCGCAACACTGA
* * * * * *
60334 ATTTCAAATTCGCAACACAAAAGTC-A-AATTCGCAACGC-GATAGTCAAATTCGCAACGC-GAA
1 ATGTCAAATTCGCAACGC-GAA-TCTATAAATCGCAACACAGA-AGTCAAATTCGCAACACAG-A
60395 AGTCAAATTCG
62 AGTCAAATTCG
60406 TAAAGCGCGT
Statistics
Matches: 150, Mismatches: 15, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
98 2 0.01
99 4 0.03
100 87 0.58
101 52 0.35
102 3 0.02
103 2 0.01
ACGTcount: A:0.40, C:0.24, G:0.15, T:0.21
Consensus pattern (101 bp):
ATGTCAAATTCGCAACGCGAATCTATAAATCGCAACACAGAAGTCAAATTCGCAACACAGAAGTC
AAATTCGCAACACGATAGTCAAATTCGCAACACTGA
Found at i:60270 original size:60 final size:60
Alignment explanation
Indices: 60166--60405 Score: 265
Period size: 60 Copynumber: 4.0 Consensus size: 60
60156 TGTAAATCGT
* * * * * *
60166 AACACAGAATTCAAATTTGCAACAC-ATAAGTCAAATTTGCAACAC-GATAGTCCAATTCGC
1 AACACAGAAGTCAAATTCGCAACGCGAT-AGTCAAAATCGCAACACAGA-AGTCAAATTCGC
* *
60226 TACACTGAAGTCAAATTCGCAACGCGA-A-TCTATAAATCGCAACACAGAAGTCAAATTCGC
1 AACACAGAAGTCAAATTCGCAACGCGATAGTC-A-AAATCGCAACACAGAAGTCAAATTCGC
* * *
60286 AACACAGAAGTCAAATTCGCAACGCGATAGTCAAATTCGCAACACTGAATTTCAAATTCGC
1 AACACAGAAGTCAAATTCGCAACGCGATAGTCAAAATCGCAACACAGAA-GTCAAATTCGC
* * *
60347 AACACAAAAGTCAAATTCGCAACGCGATAGTCAAATTCGCAACGC-GAAAGTCAAATTCG
1 AACACAGAAGTCAAATTCGCAACGCGATAGTCAAAATCGCAACACAG-AAGTCAAATTCG
60406 TAAAGCGCGT
Statistics
Matches: 156, Mismatches: 16, Indels: 16
0.83 0.09 0.09
Matches are distributed among these distances:
58 2 0.01
59 2 0.01
60 90 0.58
61 60 0.38
62 2 0.01
ACGTcount: A:0.41, C:0.24, G:0.15, T:0.20
Consensus pattern (60 bp):
AACACAGAAGTCAAATTCGCAACGCGATAGTCAAAATCGCAACACAGAAGTCAAATTCGC
Found at i:60498 original size:57 final size:57
Alignment explanation
Indices: 60429--60825 Score: 614
Period size: 57 Copynumber: 6.9 Consensus size: 57
60419 TTTTCGCAAC
*
60429 ACTGTTTACCTATATCGGTAATTAGCGTTGCGAATTTGTAAATCGTGTTGCGATAGT
1 ACTGTTTACCTATATCGGTAATTAGCGTTGCGAATTTGTAAATCGCGTTGCGATAGT
* * * * * *
60486 ACTGTTTACCTATATCGGTAATTAGGGTTGCAAATTCGAAAATCGCGTTACAATAGT
1 ACTGTTTACCTATATCGGTAATTAGCGTTGCGAATTTGTAAATCGCGTTGCGATAGT
*
60543 ACTATTTACCTATATCGGTAATTAGCGTTGCGAATTTGTAAATCGCGTTGCGATAGT
1 ACTGTTTACCTATATCGGTAATTAGCGTTGCGAATTTGTAAATCGCGTTGCGATAGT
60600 ACTGTTTACCTATATCGGTAATTAGCGTTGCGAATTTGTAAATCGCGTTGCGATAGT
1 ACTGTTTACCTATATCGGTAATTAGCGTTGCGAATTTGTAAATCGCGTTGCGATAGT
60657 ACTGTTTACCTATATCGGTAATTAGCGTTGCGAATTTGTAAATCGCGTTGCGATAGT
1 ACTGTTTACCTATATCGGTAATTAGCGTTGCGAATTTGTAAATCGCGTTGCGATAGT
* * * * *
60714 ATTGTTTACTTATATCAGTAATTAGCATTGCGAATTTGAAAATCGCGTTGCGATAGT
1 ACTGTTTACCTATATCGGTAATTAGCGTTGCGAATTTGTAAATCGCGTTGCGATAGT
* ** * * *
60771 ACTGTTTATCTACGTCGGTAATCAGCGTTGCGAATTTGGAAAATGGCGTTGCGAT
1 ACTGTTTACCTATATCGGTAATTAGCGTTGCGAATTT-GTAAATCGCGTTGCGAT
60826 TTACATATTA
Statistics
Matches: 310, Mismatches: 29, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
57 294 0.95
58 16 0.05
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.36
Consensus pattern (57 bp):
ACTGTTTACCTATATCGGTAATTAGCGTTGCGAATTTGTAAATCGCGTTGCGATAGT
Found at i:62088 original size:24 final size:24
Alignment explanation
Indices: 61990--62089 Score: 85
Period size: 24 Copynumber: 4.2 Consensus size: 24
61980 CATTAAAATG
* *
61990 ATAAACAAACGCAAATGAAAGAAC
1 ATAAACGAACGCAAACGAAAGAAC
* * * *
62014 ACAAATGAACACAAACGAACGAAC
1 ATAAACGAACGCAAACGAAAGAAC
* * *
62038 ATAAATGAACAC-AACGAAAGAAT
1 ATAAACGAACGCAAACGAAAGAAC
* * *
62061 ATAAACGAACGTAAATGAACGAAC
1 ATAAACGAACGCAAACGAAAGAAC
62085 ATAAA
1 ATAAA
62090 ATTAATTGGG
Statistics
Matches: 60, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
23 18 0.30
24 42 0.70
ACGTcount: A:0.60, C:0.17, G:0.13, T:0.10
Consensus pattern (24 bp):
ATAAACGAACGCAAACGAAAGAAC
Found at i:62288 original size:14 final size:14
Alignment explanation
Indices: 62266--62305 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
62256 GGGTATGGAA
62266 AACATAAACAAACG
1 AACATAAACAAACG
* * *
62280 AACACAAACGAGCG
1 AACATAAACAAACG
62294 AACATAAACAAA
1 AACATAAACAAA
62306 TGAGTTATCG
Statistics
Matches: 20, Mismatches: 6, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.62, C:0.23, G:0.10, T:0.05
Consensus pattern (14 bp):
AACATAAACAAACG
Found at i:63209 original size:17 final size:17
Alignment explanation
Indices: 63187--63219 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
63177 ACCTATAAAA
63187 TTTATTTATT-TTTTATT
1 TTTATTT-TTATTTTATT
63204 TTTATTTTTATTTTAT
1 TTTATTTTTATTTTAT
63220 ACAGTATATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.13
17 13 0.87
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (17 bp):
TTTATTTTTATTTTATT
Found at i:67956 original size:27 final size:27
Alignment explanation
Indices: 67925--67984 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
67915 TCTGTGACAG
*
67925 TGGCGGAGTCATAAAACCAGGTGACGA
1 TGGCGGAGTCATAAAACCAGGTGAAGA
* *
67952 TGGCGGGGTCATAAAACCAGGTGAAGG
1 TGGCGGAGTCATAAAACCAGGTGAAGA
67979 TGGCGG
1 TGGCGG
67985 CAGCAACATC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.28, C:0.17, G:0.40, T:0.15
Consensus pattern (27 bp):
TGGCGGAGTCATAAAACCAGGTGAAGA
Found at i:69680 original size:111 final size:111
Alignment explanation
Indices: 69543--69764 Score: 408
Period size: 111 Copynumber: 2.0 Consensus size: 111
69533 ATTACAAAAA
*
69543 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAATTATTACTAATAATTTAAATTA
1 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAAATATTACTAATAATTTAAATTA
*
69608 AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTATCGAGATAT
66 AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTATAGAGATAT
69654 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAAATATTACTAATAATTTAAATTA
1 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAAATATTACTAATAATTTAAATTA
* *
69719 AATTAAAACGTTAAAATGTTACCGTATTAGCAAAGTGTAGAGATAT
66 AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTATAGAGATAT
69765 ATGATTTTCA
Statistics
Matches: 107, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
111 107 1.00
ACGTcount: A:0.45, C:0.11, G:0.08, T:0.36
Consensus pattern (111 bp):
TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAAATATTACTAATAATTTAAATTA
AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTATAGAGATAT
Found at i:69846 original size:17 final size:18
Alignment explanation
Indices: 69826--69866 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
69816 GAATTATATT
69826 AGTAAAATA-TTAAATAA
1 AGTAAAATACTTAAATAA
69843 AGTAAAATACTTAAATAA
1 AGTAAAATACTTAAATAA
*
69861 ATTAAA
1 AGTAAA
69867 CACATAATAG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.29
Consensus pattern (18 bp):
AGTAAAATACTTAAATAA
Found at i:70196 original size:50 final size:50
Alignment explanation
Indices: 70071--70188 Score: 155
Period size: 50 Copynumber: 2.4 Consensus size: 50
70061 AGATACCCAG
*
70071 GTATAGCGCAGATCAGGGGGCGCGCTATACCCACGTGGCGCCAAATCACC
1 GTATAGCGCGGATCAGGGGGCGCGCTATACCCACGTGGCGCCAAATCACC
* * ** * * *
70121 GTATATCGTGGGGCAGGGGGCGCGCTATACCCACGTGGTGCTAAATCAGC
1 GTATAGCGCGGATCAGGGGGCGCGCTATACCCACGTGGCGCCAAATCACC
*
70171 GTATAGCGCGGTTCAGGG
1 GTATAGCGCGGATCAGGG
70189 CACGCGCTTT
Statistics
Matches: 56, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 56 1.00
ACGTcount: A:0.21, C:0.26, G:0.35, T:0.18
Consensus pattern (50 bp):
GTATAGCGCGGATCAGGGGGCGCGCTATACCCACGTGGCGCCAAATCACC
Found at i:70964 original size:3 final size:3
Alignment explanation
Indices: 70949--71042 Score: 91
Period size: 3 Copynumber: 30.7 Consensus size: 3
70939 TTCATTTAAA
*
70949 TAT TAT T-T ATAT TAT TAT TAT TAT TAT TAT TAT TAT AAT TAT TAT
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * *
70994 AAT TAC TAA TAT TAT TATT TAT TAC TAA TAT TAT TAT TAAA TAT TAT
1 TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT T-AT TAT TAT
71041 TA
1 TA
71043 CAAACCCAAA
Statistics
Matches: 75, Mismatches: 12, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
2 1 0.01
3 68 0.91
4 6 0.08
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:71547 original size:11 final size:11
Alignment explanation
Indices: 71519--71552 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
71509 ACAACACAGC
*
71519 AAAGAAACAGA
1 AAAGAAAAAGA
71530 AAA-AAAAAGA
1 AAAGAAAAAGA
71540 AAAGAAAAAGA
1 AAAGAAAAAGA
71551 AA
1 AA
71553 GAAGAGAAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 9 0.43
11 12 0.57
ACGTcount: A:0.82, C:0.03, G:0.15, T:0.00
Consensus pattern (11 bp):
AAAGAAAAAGA
Found at i:71547 original size:15 final size:15
Alignment explanation
Indices: 71519--71561 Score: 59
Period size: 15 Copynumber: 2.8 Consensus size: 15
71509 ACAACACAGC
71519 AAAGAAACAGAAAAAA
1 AAAGAAA-AGAAAAAA
*
71535 AAAGAAAAGAAAAAG
1 AAAGAAAAGAAAAAA
*
71550 AAAGAAGAGAAA
1 AAAGAAAAGAAA
71562 CTTACTCTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 18 0.72
16 7 0.28
ACGTcount: A:0.79, C:0.02, G:0.19, T:0.00
Consensus pattern (15 bp):
AAAGAAAAGAAAAAA
Found at i:72453 original size:21 final size:20
Alignment explanation
Indices: 72413--72470 Score: 70
Period size: 17 Copynumber: 3.0 Consensus size: 20
72403 TTATATAGTT
72413 ATAAATATTTATAATA---A
1 ATAAATATTTATAATATTTA
72430 ATAAATATTTATATATATTTA
1 ATAAATATTTATA-ATATTTA
72451 ATAAATTATTT-TAATATTTA
1 ATAAA-TATTTATAATATTTA
72471 TTTTTTAATA
Statistics
Matches: 36, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
17 13 0.36
18 3 0.08
20 7 0.19
21 8 0.22
22 5 0.14
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
ATAAATATTTATAATATTTA
Found at i:76068 original size:15 final size:15
Alignment explanation
Indices: 76050--76081 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
76040 ATCAATACTT
76050 TTTTGCATACATGCA
1 TTTTGCATACATGCA
*
76065 TTTTGCATACATTCA
1 TTTTGCATACATGCA
76080 TT
1 TT
76082 ATTCATTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.25, C:0.19, G:0.09, T:0.47
Consensus pattern (15 bp):
TTTTGCATACATGCA
Found at i:83416 original size:13 final size:14
Alignment explanation
Indices: 83394--83431 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
83384 TATTATGCTT
*
83394 AAAGAGAAAAAGA-
1 AAAGAAAAAAAGAG
83407 AAAGAAAAAAAGAG
1 AAAGAAAAAAAGAG
83421 AAA-AAAAAAAG
1 AAAGAAAAAAAG
83432 GGGGGGGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 20 0.87
14 3 0.13
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (14 bp):
AAAGAAAAAAAGAG
Found at i:84717 original size:83 final size:83
Alignment explanation
Indices: 84582--85123 Score: 757
Period size: 77 Copynumber: 6.5 Consensus size: 83
84572 AAATGTAATT
*
84582 TGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATCATT
1 TGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATTATT
84647 GAATTTGAAAGATGAATG
66 GAATTTGAAAGATGAATG
84665 TGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATTATT
1 TGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATTATT
* *
84730 GAA-TTGGAACA--AA--
66 GAATTTGAAAGATGAATG
*
84743 TG-TAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATTATT
1 TGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATTATT
* *
84807 GAA-TTGGAACA--AA--
66 GAATTTGAAAGATGAATG
* *
84820 TG-TAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATCATT
1 TGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATTATT
*
84884 GAATTTGAAAGATGAATT
66 GAATTTGAAAGATGAATG
84902 TGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCACAGAA
1 TGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGG--T-----A-A-AA
* * *
84967 CCAGTTATTGAATTTGAAATAGGAATG
57 CCAATTATTGAATTTGAAAGATGAATG
* *
84994 TGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACTAGTTATT
1 TGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATTATT
85059 GAATTTGGAAAGATGAATG
66 GAATTT-GAAAGATGAATG
* *
85078 TGCCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTAATCTG
1 TGCTC-ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTG
85124 ATTCGGTAGG
Statistics
Matches: 424, Mismatches: 18, Indels: 32
0.89 0.04 0.07
Matches are distributed among these distances:
77 140 0.33
78 8 0.02
80 4 0.01
82 8 0.02
83 130 0.31
84 15 0.04
85 41 0.10
90 2 0.00
91 1 0.00
92 75 0.18
ACGTcount: A:0.27, C:0.13, G:0.22, T:0.38
Consensus pattern (83 bp):
TGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATTATT
GAATTTGAAAGATGAATG
Found at i:84873 original size:237 final size:249
Alignment explanation
Indices: 84587--85123 Score: 810
Period size: 237 Copynumber: 2.2 Consensus size: 249
84577 TAATTTGCTC
84587 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATCATTGAATT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATCATTGAATT
84652 TGAAAGATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGG-
66 TGAAAGATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGA
*
84716 T-A-A-AACCAATTATTGAA-TTGGAACA-AA-TG-TAATAGCATCTTCTGGAAGTGTTCTTTGA
131 TAACAGAACCAATTATTGAATTTGAAACAGAAGTGCTAATAGCATCTTCTGGAAGTGTTCTTTGA
84774 GTTATCTGATCTGGTTTGGTAAAACCAATTATTGAA-TTGG-AACA-AATGT-A
196 GTTATCTGATCTGGTTTGGTAAAACCAATTATTGAATTTGGAAACAGAATGTCA
84824 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATCATTGAATT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATCATTGAATT
*
84889 TGAAAGATGAATTTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGT
66 TGAAAGATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGG-
* * *
84954 ATGAACCACAGAACCAGTTATTGAATTTGAAATAGGAATGTGCTCATAGCATCTTCTGGAAGTGT
130 AT--A--ACAGAACCAATTATTGAATTTGAAACA-GAA-GTGCTAATAGCATCTTCTGGAAGTGT
* * *
85019 TCTTTGAGTTATCTGATCTGGTTTGGTAAAACTAGTTATTGAATTTGGAAAGATGAATGTGCCCA
189 TCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATTATTGAATTTGGAAACA-GAATGT---CA
*
85084 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTAATCTG
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTG
85124 ATTCGGTAGG
Statistics
Matches: 268, Mismatches: 9, Indels: 23
0.89 0.03 0.08
Matches are distributed among these distances:
237 128 0.48
239 1 0.00
244 1 0.00
245 1 0.00
246 13 0.05
247 6 0.02
249 2 0.01
251 2 0.01
252 62 0.23
253 4 0.01
254 3 0.01
256 5 0.02
260 40 0.15
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.38
Consensus pattern (249 bp):
ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATCATTGAATT
TGAAAGATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGA
TAACAGAACCAATTATTGAATTTGAAACAGAAGTGCTAATAGCATCTTCTGGAAGTGTTCTTTGA
GTTATCTGATCTGGTTTGGTAAAACCAATTATTGAATTTGGAAACAGAATGTCA
Found at i:85184 original size:175 final size:170
Alignment explanation
Indices: 84587--85184 Score: 606
Period size: 160 Copynumber: 3.6 Consensus size: 170
84577 TAATTTGCTC
* *
84587 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTA-AA-ACC--AATC---A
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAGAACCCCAGAACCGATA
*
84645 TT-GAATTTGAAAGATGAATGTGCTCAT-AGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
66 TTGGAA-TTAAAAGATGAA----CTCATGA-CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
*
84708 TGGTTTGGTAAAACCAATTATTGAA-TTGG-AACA--AATGT---A
125 TGGTTTGGTAAAACCAATTATTGAATTTGGAAAGATGAATGTGCCA
* * ** **
84747 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTA-AAACCAATTATTGA-A
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAGAACCCCAGAACCGATA
* *
84810 TTGGAA-CAAATG-T-AA-T-A-G-CATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTT
66 TTGGAATTAAAAGATGAACTCATGACATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTT
* *
84868 GGTAAAACCAATCATTGAATTT-GAAAGATGAATTTGCTC-
131 GGTAAAACCAATTATTGAATTTGGAAAGATGAATGTGC-CA
* *
84907 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCACAGAACCAGT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTA-GAACCCCAGAACC-GA
**
84972 TATT-GAATTTGAAATAGGAATGTGCTCAT-AGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGA
64 TATTGGAA-TT-AAA-A-G-ATGAACTCATGA-CATCTTCTGGAAGTGTTCTTTGAGTTATCTGA
* *
85035 TCTGGTTTGGTAAAACTAGTTATTGAATTTGGAAAGATGAATGTGCCCA
123 TCTGGTTTGGTAAAACCAATTATTGAATTTGGAAAGATGAATGTG-CCA
* * *
85084 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTAATCTGATTCGGTAGGAACCCCAGAACCGAT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTA-GAACCCCAGAACCGAT
85149 CATTGGAATTAAAAGATGAACTGCATGATCATCTTC
65 -ATTGGAATTAAAAGATGAACT-CATGA-CATCTTC
85185 ATTAATAATC
Statistics
Matches: 364, Mismatches: 35, Indels: 63
0.79 0.08 0.14
Matches are distributed among these distances:
154 59 0.16
155 5 0.01
156 1 0.00
157 5 0.01
160 98 0.27
161 1 0.00
162 7 0.02
163 7 0.02
164 6 0.02
165 3 0.01
166 6 0.02
168 1 0.00
170 1 0.00
172 1 0.00
173 6 0.02
174 4 0.01
175 68 0.19
176 19 0.05
177 63 0.17
178 3 0.01
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.36
Consensus pattern (170 bp):
ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAGAACCCCAGAACCGATA
TTGGAATTAAAAGATGAACTCATGACATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTT
GGTAAAACCAATTATTGAATTTGGAAAGATGAATGTGCCA
Found at i:86324 original size:113 final size:112
Alignment explanation
Indices: 85848--86612 Score: 1142
Period size: 113 Copynumber: 6.8 Consensus size: 112
85838 GCAAAGATTT
* *
85848 AAATCCATCATTCGATGGATCAGCTTTTCCAAAGAAAGTTCATAATGAGAAGAACTCATCTGAAG
1 AAATCCATCATTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAG
* *
85913 AAGAAGAATAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
66 AAGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
85960 AAATCCATCATTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAG
1 AAATCCATCATTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAG
*
86025 AAGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
66 AAGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
86072 AAATCCATCATTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAG
1 AAATCCATCATTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAG
** * * *
86137 AAGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTTAACCTTTTGTTT
66 AAGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
* ** * ***
86184 AAATTCATCATTCAATGGATCAACTTTTCCAGTTCAAGTTCATAATGAGAAGAACTCATCTGAAG
1 AAATCCATCATTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAG
86249 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
66 AA-GAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
* * * *
86297 AAATCTATCACTTGATGGATTATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAG
1 AAATCCATCATTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAG
* ** * *
86362 AATGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAATTTTTTGTTT
66 AA-GAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
* * * * * * *
86410 GAATTCATCATTTGATGGATCAACATTGCCAG-GTAGAGTTCCTAATGAGAAGAACTCATCTGAA
1 AAATCCATCATTTGATGGATCAGCTTTTCCAGAG-AAAGTTCATAATGAGAAGAACTCATCTGAA
*
86474 GAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTC
65 GAA-GAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
* *
86523 AAATCCATCACTTGATGAATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCT---G
1 AAATCCATCATTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAG
86585 AAGAAGAAGAAGTTCATAATGAGAAGAA
66 AAGAAGAAGAAGTTCATAATGAGAAGAA
86613 CTAATCTGAA
Statistics
Matches: 589, Mismatches: 61, Indels: 9
0.89 0.09 0.01
Matches are distributed among these distances:
109 26 0.04
110 3 0.01
112 276 0.47
113 283 0.48
114 1 0.00
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.29
Consensus pattern (112 bp):
AAATCCATCATTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAG
AAGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTC
Found at i:86605 original size:36 final size:36
Alignment explanation
Indices: 86558--86636 Score: 140
Period size: 36 Copynumber: 2.2 Consensus size: 36
86548 TTTCCAGAGA
* *
86558 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAG
1 AAGTTCATAATGAGAAGAACTAATCTGAAAAAGAAG
86594 AAGTTCATAATGAGAAGAACTAATCTGAAAAAGAAG
1 AAGTTCATAATGAGAAGAACTAATCTGAAAAAGAAG
86630 AAGTTCA
1 AAGTTCA
86637 CCATGAAAAG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 41 1.00
ACGTcount: A:0.49, C:0.10, G:0.20, T:0.20
Consensus pattern (36 bp):
AAGTTCATAATGAGAAGAACTAATCTGAAAAAGAAG
Found at i:86894 original size:3 final size:3
Alignment explanation
Indices: 86888--86966 Score: 70
Period size: 3 Copynumber: 25.7 Consensus size: 3
86878 TTCATTTAAA
* * *
86888 TAT TAT T-T ATAT TAT TAT TAT TAT TAT TAT AAT TAC TAA TAT TAT
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
86933 TATT TAT TAC TAA TAT TAT TAT TAAA TAT TAT TA
1 TA-T TAT TAT TAT TAT TAT TAT T-AT TAT TAT TA
86967 CAAACCCAAA
Statistics
Matches: 62, Mismatches: 10, Indels: 8
0.77 0.12 0.10
Matches are distributed among these distances:
2 1 0.02
3 55 0.89
4 6 0.10
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:87471 original size:11 final size:11
Alignment explanation
Indices: 87443--87476 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
87433 ACAACACAGC
*
87443 AAAGAAACAGA
1 AAAGAAAAAGA
87454 AAA-AAAAAGA
1 AAAGAAAAAGA
87464 AAAGAAAAAGA
1 AAAGAAAAAGA
87475 AA
1 AA
87477 GAAGAGAAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 9 0.43
11 12 0.57
ACGTcount: A:0.82, C:0.03, G:0.15, T:0.00
Consensus pattern (11 bp):
AAAGAAAAAGA
Found at i:87471 original size:15 final size:15
Alignment explanation
Indices: 87443--87485 Score: 59
Period size: 15 Copynumber: 2.8 Consensus size: 15
87433 ACAACACAGC
87443 AAAGAAACAGAAAAAA
1 AAAGAAA-AGAAAAAA
*
87459 AAAGAAAAGAAAAAG
1 AAAGAAAAGAAAAAA
*
87474 AAAGAAGAGAAA
1 AAAGAAAAGAAA
87486 CTTACTCTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 18 0.72
16 7 0.28
ACGTcount: A:0.79, C:0.02, G:0.19, T:0.00
Consensus pattern (15 bp):
AAAGAAAAGAAAAAA
Found at i:88571 original size:15 final size:15
Alignment explanation
Indices: 88537--88581 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
88527 GATATTTTAA
88537 ATAAATAAATATATT
1 ATAAATAAATATATT
*
88552 TTAAA-AAATATGATT
1 ATAAATAAATAT-ATT
*
88567 ATAAATTAATATATT
1 ATAAATAAATATATT
88582 TTGAATTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 6 0.24
15 14 0.56
16 5 0.20
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (15 bp):
ATAAATAAATATATT
Found at i:89198 original size:20 final size:20
Alignment explanation
Indices: 89173--89213 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
89163 GGTGATTCTT
89173 TGTAATCGTTGTATTAGCAA
1 TGTAATCGTTGTATTAGCAA
*
89193 TGTAATTGTTGTATTAGCAA
1 TGTAATCGTTGTATTAGCAA
89213 T
1 T
89214 TTAAATTGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.29, C:0.07, G:0.20, T:0.44
Consensus pattern (20 bp):
TGTAATCGTTGTATTAGCAA
Found at i:89914 original size:22 final size:22
Alignment explanation
Indices: 89889--89943 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
89879 TCAGGAGTTA
* *
89889 CAGGAGTTATTTGATTTAATTC
1 CAGGAGTTATATGATATAATTC
* *
89911 CAGG-GATTACATGATATAATTT
1 CAGGAG-TTATATGATATAATTC
89933 CAGGAGTTATA
1 CAGGAGTTATA
89944 ACAGCTGAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
21 1 0.04
22 24 0.92
23 1 0.04
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (22 bp):
CAGGAGTTATATGATATAATTC
Found at i:95111 original size:2 final size:2
Alignment explanation
Indices: 95106--95144 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
95096 TATACTTTTG
95106 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
95145 CTTACACATC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:95862 original size:22 final size:22
Alignment explanation
Indices: 95837--95891 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
95827 TCAGGAGTTA
* *
95837 CAGGAGTTATTTGATTTAATTC
1 CAGGAGTTATATGATATAATTC
* * *
95859 CAGGGGTTACATGATATAATTT
1 CAGGAGTTATATGATATAATTC
*
95881 CAAGAGTTATA
1 CAGGAGTTATA
95892 ACAGCTGAAT
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (22 bp):
CAGGAGTTATATGATATAATTC
Found at i:99079 original size:33 final size:33
Alignment explanation
Indices: 99037--99101 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
99027 GAACCTTCAG
*
99037 TACCTTCAGCAGACTCTACTCCATCTTTTTTAC
1 TACCTTCAGCAGACTCTACTCCATCTTGTTTAC
**
99070 TACCTTCAGCATTCTCTACTCCATCTTGTTTA
1 TACCTTCAGCAGACTCTACTCCATCTTGTTTA
99102 TCTTCACAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.20, C:0.32, G:0.06, T:0.42
Consensus pattern (33 bp):
TACCTTCAGCAGACTCTACTCCATCTTGTTTAC
Found at i:99659 original size:19 final size:19
Alignment explanation
Indices: 99637--99674 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
99627 ACTAATGAAC
99637 TATAAAAAAAAGCATAAAA
1 TATAAAAAAAAGCATAAAA
* *
99656 TATATATAAAAGCATAAAA
1 TATAAAAAAAAGCATAAAA
99675 AACATATTCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.68, C:0.05, G:0.05, T:0.21
Consensus pattern (19 bp):
TATAAAAAAAAGCATAAAA
Found at i:99681 original size:19 final size:19
Alignment explanation
Indices: 99644--99681 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
99634 AACTATAAAA
* *
99644 AAAAGCATAAAATATATAT
1 AAAAGCATAAAAAACATAT
99663 AAAAGCATAAAAAACATAT
1 AAAAGCATAAAAAACATAT
99682 TCCATATACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.66, C:0.08, G:0.05, T:0.21
Consensus pattern (19 bp):
AAAAGCATAAAAAACATAT
Found at i:101825 original size:3 final size:3
Alignment explanation
Indices: 101801--101857 Score: 66
Period size: 3 Copynumber: 20.0 Consensus size: 3
101791 TTGATATTAT
* * *
101801 TAA TAA AAA TAA TGA T-A TAA TAA TAA TAA AAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
101848 T-A TAA -AA TAA
1 TAA TAA TAA TAA
101858 AACTCAGACG
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
2 6 0.13
3 40 0.87
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:102467 original size:31 final size:32
Alignment explanation
Indices: 102404--102470 Score: 82
Period size: 31 Copynumber: 2.1 Consensus size: 32
102394 TAATCACATC
* *
102404 TTAAATAAATAAAAATAAAAATATCACTATATT
1 TTAAATAAATAAAAAT-AAAATATAACCATATT
* *
102437 TTAATTAAATAAAAAT-GAATATAACCATATT
1 TTAAATAAATAAAAATAAAATATAACCATATT
102468 TTA
1 TTA
102471 TATATTTTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
31 15 0.50
33 15 0.50
ACGTcount: A:0.57, C:0.06, G:0.01, T:0.36
Consensus pattern (32 bp):
TTAAATAAATAAAAATAAAATATAACCATATT
Found at i:103955 original size:19 final size:19
Alignment explanation
Indices: 103931--103967 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
103921 ATGACCAACA
*
103931 AAATCGCAATGCGATCTCT
1 AAATCGCAACGCGATCTCT
103950 AAATCGCAACGCGATCTC
1 AAATCGCAACGCGATCTC
103968 CAGTATCGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.22
Consensus pattern (19 bp):
AAATCGCAACGCGATCTCT
Found at i:104055 original size:20 final size:20
Alignment explanation
Indices: 103995--104079 Score: 84
Period size: 20 Copynumber: 4.2 Consensus size: 20
103985 TTCCAGATTT
*
103995 GCAACGCGATTTTGACTATC
1 GCAACGCGATTCTGACTATC
* * *
104015 GCAATGCAGA-TATGTA-AATC
1 GCAACGC-GATTCTG-ACTATC
*
104035 GCAACGTGATTCTGACTATC
1 GCAACGCGATTCTGACTATC
*
104055 GGAACGCGATTCTGACTATC
1 GCAACGCGATTCTGACTATC
104075 GCAAC
1 GCAAC
104080 ACTGAATTTC
Statistics
Matches: 51, Mismatches: 10, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
19 3 0.06
20 45 0.88
21 3 0.06
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (20 bp):
GCAACGCGATTCTGACTATC
Found at i:104924 original size:24 final size:24
Alignment explanation
Indices: 104897--104950 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
104887 GTATTCAAAA
104897 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATCTTGGTCAATACCCGGAC
* *
104921 TTTGATCTTGGTCAATACTCGGAT
1 TTTGATCTTGGTCAATACCCGGAC
104945 TTTGAT
1 TTTGAT
104951 GATGTTTCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCGGAC
Found at i:106018 original size:18 final size:18
Alignment explanation
Indices: 105995--106029 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
105985 AGCAAAAGGC
*
105995 AATCAAAATCGCAATCAA
1 AATCAAAATCCCAATCAA
106013 AATCAAAATCCCAATCA
1 AATCAAAATCCCAATCA
106030 CAACCGGCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.54, C:0.26, G:0.03, T:0.17
Consensus pattern (18 bp):
AATCAAAATCCCAATCAA
Found at i:106225 original size:20 final size:20
Alignment explanation
Indices: 106200--106350 Score: 172
Period size: 20 Copynumber: 7.8 Consensus size: 20
106190 TTACACATTC
*
106200 ATTTGAATATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
106220 ATTTGACTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
*
106240 ATTTGATTATCGCAACG-GA
1 ATTTGACTATCGCAACGCGA
* **
106259 A----A-AATTACAACGCGA
1 ATTTGACTATCGCAACGCGA
*
106274 ATTTGACTATCGCAACACGA
1 ATTTGACTATCGCAACGCGA
*
106294 ATTTGACTATCGCAACGTGA
1 ATTTGACTATCGCAACGCGA
*
106314 ATTTGATTATCGCAACG-GCA
1 ATTTGACTATCGCAACGCG-A
106334 ATTTGACTATCGCAACG
1 ATTTGACTATCGCAACG
106351 AGAAAATTGC
Statistics
Matches: 111, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
14 7 0.06
15 4 0.04
19 5 0.05
20 95 0.86
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (20 bp):
ATTTGACTATCGCAACGCGA
Found at i:106376 original size:94 final size:94
Alignment explanation
Indices: 106200--106394 Score: 252
Period size: 94 Copynumber: 2.1 Consensus size: 94
106190 TTACACATTC
* *
106200 ATTTGAATATCGCAACGCGAATTTGACTATCGCAACGCGAATTTGATTATCGCAACGGAAAAATT
1 ATTTGACTATCGCAACGCGAATTTGACTATCGCAACGCGAATTTGACTATCGCAACGGAAAAATT
** * *
106265 ACAACGCGAATTTGACTATCGCAACACGA
66 ACAAAACGAATTAGACTATCACAACACGA
* *
106294 ATTTGACTATCGCAACGTGAATTTGATTATCGCAACG-GCAATTTGACTATCGCAAC-GAGAAAA
1 ATTTGACTATCGCAACGCGAATTTGACTATCGCAACGCG-AATTTGACTATCGCAACGGA-AAAA
* * *
106357 TTGCAAAACGTATTAGACTATCACAACGCGA
64 TTACAAAACGAATTAGACTATCACAACACGA
106388 A-TTGACT
1 ATTTGACT
106395 TTCTCGTTGC
Statistics
Matches: 88, Mismatches: 11, Indels: 5
0.85 0.11 0.05
Matches are distributed among these distances:
93 9 0.10
94 79 0.90
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.26
Consensus pattern (94 bp):
ATTTGACTATCGCAACGCGAATTTGACTATCGCAACGCGAATTTGACTATCGCAACGGAAAAATT
ACAAAACGAATTAGACTATCACAACACGA
Found at i:106610 original size:67 final size:66
Alignment explanation
Indices: 106498--106664 Score: 162
Period size: 71 Copynumber: 2.5 Consensus size: 66
106488 GATTGAAATC
* *
106498 AACAAATCAACTTTTACATTTCAATCAATTAAACAAGCACAAATAAGAA-TTA-TTTACACGTCA
1 AACAAATCAACTTTTACA--T-AATCAATTAAACAAGCAAAAATAAGAATTTATTTTACACATCA
106561 ATTA
63 ATTA
* * * *
106565 AATAAATCAACTTTTACA-AATCAATTAAACAAGCAAAAAATAATAATAATTCTTATTTTCCTCA
1 AACAAATCAACTTTTACATAATCAATTAAACAAGC---AAA-AATAAGAA-T-TTATTTTACACA
106629 TCAATTA
60 TCAATTA
*
106636 AACAAATCAACTTTTA-AGAATCAATTAAA
1 AACAAATCAACTTTTACATAATCAATTAAA
106665 TAATAAAAAA
Statistics
Matches: 84, Mismatches: 7, Indels: 14
0.80 0.07 0.13
Matches are distributed among these distances:
63 16 0.19
66 2 0.02
67 24 0.29
70 4 0.05
71 38 0.45
ACGTcount: A:0.50, C:0.16, G:0.03, T:0.31
Consensus pattern (66 bp):
AACAAATCAACTTTTACATAATCAATTAAACAAGCAAAAATAAGAATTTATTTTACACATCAATT
A
Found at i:117520 original size:42 final size:42
Alignment explanation
Indices: 117461--117583 Score: 133
Period size: 42 Copynumber: 2.9 Consensus size: 42
117451 GTGAATCGGG
* * *
117461 CTCTTGAATGGTGGGAGGGACCTCTTCAACGATGACAGGGGC
1 CTCTTGAACGATGGGAGGGACCTCTTGAACGATGACAGGGGC
** *
117503 CTCTTGAACGATGGGAGGGGA-CTCTTGATGGATGATAGGGGC
1 CTCTTGAACGATGGGA-GGGACCTCTTGAACGATGACAGGGGC
** *
117545 CTCTTGAACGATAGTAAAGG-CCTCTTGAACGATGACAGG
1 CTCTTGAACGAT-GGGAGGGACCTCTTGAACGATGACAGG
117584 TGAGTCGGGC
Statistics
Matches: 66, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
42 60 0.91
43 6 0.09
ACGTcount: A:0.24, C:0.19, G:0.34, T:0.23
Consensus pattern (42 bp):
CTCTTGAACGATGGGAGGGACCTCTTGAACGATGACAGGGGC
Found at i:117521 original size:21 final size:21
Alignment explanation
Indices: 117461--117578 Score: 101
Period size: 21 Copynumber: 5.6 Consensus size: 21
117451 GTGAATCGGG
* * *
117461 CTCTTGAATGGTGGGAGGGAC
1 CTCTTGAACGATGGGAGGGGC
* **
117482 CTCTTCAACGATGACAGGGGC
1 CTCTTGAACGATGGGAGGGGC
*
117503 CTCTTGAACGATGGGAGGGGA
1 CTCTTGAACGATGGGAGGGGC
** **
117524 CTCTTGATGGATGATAGGGGC
1 CTCTTGAACGATGGGAGGGGC
* * **
117545 CTCTTGAACGATAGTAAAGGC
1 CTCTTGAACGATGGGAGGGGC
117566 CTCTTGAACGATG
1 CTCTTGAACGATG
117579 ACAGGTGAGT
Statistics
Matches: 75, Mismatches: 22, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 75 1.00
ACGTcount: A:0.24, C:0.19, G:0.34, T:0.24
Consensus pattern (21 bp):
CTCTTGAACGATGGGAGGGGC
Found at i:118524 original size:31 final size:31
Alignment explanation
Indices: 118484--118545 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
118474 CGACCCGTTT
* *
118484 ACCCGACCCGTTTACCCGACCAGTTGACCCG
1 ACCCAACCCGTTGACCCGACCAGTTGACCCG
*
118515 ACCCAACCCGTTGACCCGACCCGTTGACCCG
1 ACCCAACCCGTTGACCCGACCAGTTGACCCG
118546 TTGACCGTTG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.19, C:0.47, G:0.19, T:0.15
Consensus pattern (31 bp):
ACCCAACCCGTTGACCCGACCAGTTGACCCG
Found at i:118531 original size:8 final size:8
Alignment explanation
Indices: 118520--118578 Score: 54
Period size: 8 Copynumber: 7.4 Consensus size: 8
118510 ACCCGACCCA
118520 ACCCGTTG
1 ACCCGTTG
118528 ACCC---G
1 ACCCGTTG
118533 ACCCGTTG
1 ACCCGTTG
118541 ACCCGTTG
1 ACCCGTTG
118549 A-CCGTTG
1 ACCCGTTG
118556 ACCCACGTTG
1 A-CC-CGTTG
118566 ACCACTGTTG
1 ACC-C-GTTG
118576 ACC
1 ACC
118579 AAAACTTTGA
Statistics
Matches: 44, Mismatches: 0, Indels: 12
0.79 0.00 0.21
Matches are distributed among these distances:
5 5 0.11
7 7 0.16
8 14 0.32
9 5 0.11
10 13 0.30
ACGTcount: A:0.17, C:0.39, G:0.22, T:0.22
Consensus pattern (8 bp):
ACCCGTTG
Found at i:118545 original size:13 final size:13
Alignment explanation
Indices: 118470--118545 Score: 80
Period size: 13 Copynumber: 5.5 Consensus size: 13
118460 AACCCGACCC
118470 GACCCGACCCGTT
1 GACCCGACCCGTT
*
118483 TACCCGACCCGTT
1 GACCCGACCCGTT
* *
118496 TACCCGACCAGTT
1 GACCCGACCCGTT
118509 GACCCGACCCAACCCGTT
1 GACCCG-----ACCCGTT
118527 GACCCGACCCGTT
1 GACCCGACCCGTT
118540 GACCCG
1 GACCCG
118546 TTGACCGTTG
Statistics
Matches: 54, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
13 42 0.78
18 12 0.22
ACGTcount: A:0.18, C:0.46, G:0.20, T:0.16
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:118579 original size:10 final size:9
Alignment explanation
Indices: 118532--118579 Score: 50
Period size: 10 Copynumber: 5.6 Consensus size: 9
118522 CCGTTGACCC
118532 GACC-CGTT
1 GACCACGTT
118540 GACC-CGTT
1 GACCACGTT
118548 GA-C-CGTT
1 GACCACGTT
118555 GACCCACGTT
1 GA-CCACGTT
118565 GACCACTGTT
1 GACCAC-GTT
118575 GACCA
1 GACCA
118580 AAACTTTGAC
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
7 7 0.19
8 10 0.28
9 5 0.14
10 14 0.39
ACGTcount: A:0.19, C:0.35, G:0.23, T:0.23
Consensus pattern (9 bp):
GACCACGTT
Found at i:121020 original size:24 final size:24
Alignment explanation
Indices: 120986--121087 Score: 111
Period size: 24 Copynumber: 4.2 Consensus size: 24
120976 ATTTTCGATT
* *
120986 TGATTTCTGATTTGATACTTGACA
1 TGATTTCTGATCTGATACTTGACC
*
121010 TGGATTT-TGATCTGATA-TCTGACT
1 T-GATTTCTGATCTGATACT-TGACC
*
121034 TGGA-TTCTGATCTGTTACTTGACC
1 T-GATTTCTGATCTGATACTTGACC
*
121058 TGATTTCTGATATGATACTTGACC
1 TGATTTCTGATCTGATACTTGACC
121082 TGATTT
1 TGATTT
121088 ATGTTTTGAT
Statistics
Matches: 67, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
23 5 0.07
24 56 0.84
25 6 0.09
ACGTcount: A:0.22, C:0.15, G:0.19, T:0.45
Consensus pattern (24 bp):
TGATTTCTGATCTGATACTTGACC
Found at i:123323 original size:31 final size:31
Alignment explanation
Indices: 123283--123344 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
123273 CGACCCGTTT
* *
123283 ACCCGACCCGTTTACCCGACCAGTTGACCCG
1 ACCCAACCCGTTGACCCGACCAGTTGACCCG
*
123314 ACCCAACCCGTTGACCCGACCCGTTGACCCG
1 ACCCAACCCGTTGACCCGACCAGTTGACCCG
123345 TTGACCGTTG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.19, C:0.47, G:0.19, T:0.15
Consensus pattern (31 bp):
ACCCAACCCGTTGACCCGACCAGTTGACCCG
Found at i:123330 original size:8 final size:8
Alignment explanation
Indices: 123319--123377 Score: 54
Period size: 8 Copynumber: 7.4 Consensus size: 8
123309 ACCCGACCCA
123319 ACCCGTTG
1 ACCCGTTG
123327 ACCC---G
1 ACCCGTTG
123332 ACCCGTTG
1 ACCCGTTG
123340 ACCCGTTG
1 ACCCGTTG
123348 A-CCGTTG
1 ACCCGTTG
123355 ACCCACGTTG
1 A-CC-CGTTG
123365 ACCACTGTTG
1 ACC-C-GTTG
123375 ACC
1 ACC
123378 AAAACTTTGA
Statistics
Matches: 44, Mismatches: 0, Indels: 12
0.79 0.00 0.21
Matches are distributed among these distances:
5 5 0.11
7 7 0.16
8 14 0.32
9 5 0.11
10 13 0.30
ACGTcount: A:0.17, C:0.39, G:0.22, T:0.22
Consensus pattern (8 bp):
ACCCGTTG
Found at i:123344 original size:13 final size:13
Alignment explanation
Indices: 123269--123344 Score: 80
Period size: 13 Copynumber: 5.5 Consensus size: 13
123259 AACCCGACCC
123269 GACCCGACCCGTT
1 GACCCGACCCGTT
*
123282 TACCCGACCCGTT
1 GACCCGACCCGTT
* *
123295 TACCCGACCAGTT
1 GACCCGACCCGTT
123308 GACCCGACCCAACCCGTT
1 GACCCG-----ACCCGTT
123326 GACCCGACCCGTT
1 GACCCGACCCGTT
123339 GACCCG
1 GACCCG
123345 TTGACCGTTG
Statistics
Matches: 54, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
13 42 0.78
18 12 0.22
ACGTcount: A:0.18, C:0.46, G:0.20, T:0.16
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:123378 original size:10 final size:9
Alignment explanation
Indices: 123331--123378 Score: 50
Period size: 10 Copynumber: 5.6 Consensus size: 9
123321 CCGTTGACCC
123331 GACC-CGTT
1 GACCACGTT
123339 GACC-CGTT
1 GACCACGTT
123347 GA-C-CGTT
1 GACCACGTT
123354 GACCCACGTT
1 GA-CCACGTT
123364 GACCACTGTT
1 GACCAC-GTT
123374 GACCA
1 GACCA
123379 AAACTTTGAC
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
7 7 0.19
8 10 0.28
9 5 0.14
10 14 0.39
ACGTcount: A:0.19, C:0.35, G:0.23, T:0.23
Consensus pattern (9 bp):
GACCACGTT
Found at i:125814 original size:24 final size:24
Alignment explanation
Indices: 125780--125881 Score: 111
Period size: 24 Copynumber: 4.2 Consensus size: 24
125770 ATTTTCGATT
* *
125780 TGATTTCTGATTTGATACTTGACA
1 TGATTTCTGATCTGATACTTGACC
*
125804 TGGATTT-TGATCTGATA-TCTGACT
1 T-GATTTCTGATCTGATACT-TGACC
*
125828 TGGA-TTCTGATCTGTTACTTGACC
1 T-GATTTCTGATCTGATACTTGACC
*
125852 TGATTTCTGATATGATACTTGACC
1 TGATTTCTGATCTGATACTTGACC
125876 TGATTT
1 TGATTT
125882 ATGTTTTGAT
Statistics
Matches: 67, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
23 5 0.07
24 56 0.84
25 6 0.09
ACGTcount: A:0.22, C:0.15, G:0.19, T:0.45
Consensus pattern (24 bp):
TGATTTCTGATCTGATACTTGACC
Found at i:128115 original size:31 final size:31
Alignment explanation
Indices: 128075--128136 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
128065 CGACCCGTTT
* *
128075 ACCCGACCCGTTTACCCGACCAGTTGACCCG
1 ACCCAACCCGTTGACCCGACCAGTTGACCCG
*
128106 ACCCAACCCGTTGACCCGACCCGTTGACCCG
1 ACCCAACCCGTTGACCCGACCAGTTGACCCG
128137 TTGACCGTTG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.19, C:0.47, G:0.19, T:0.15
Consensus pattern (31 bp):
ACCCAACCCGTTGACCCGACCAGTTGACCCG
Found at i:128122 original size:8 final size:8
Alignment explanation
Indices: 128111--128150 Score: 52
Period size: 8 Copynumber: 5.5 Consensus size: 8
128101 ACCCGACCCA
128111 ACCCGTTG
1 ACCCGTTG
128119 ACCC---G
1 ACCCGTTG
128124 ACCCGTTG
1 ACCCGTTG
128132 ACCCGTTG
1 ACCCGTTG
128140 A-CCGTTG
1 ACCCGTTG
128147 ACCC
1 ACCC
128151 ACGTTGACCA
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
5 5 0.18
7 7 0.25
8 16 0.57
ACGTcount: A:0.15, C:0.42, G:0.23, T:0.20
Consensus pattern (8 bp):
ACCCGTTG
Found at i:128136 original size:13 final size:13
Alignment explanation
Indices: 128061--128136 Score: 80
Period size: 13 Copynumber: 5.5 Consensus size: 13
128051 AACCCGACCC
128061 GACCCGACCCGTT
1 GACCCGACCCGTT
*
128074 TACCCGACCCGTT
1 GACCCGACCCGTT
* *
128087 TACCCGACCAGTT
1 GACCCGACCCGTT
128100 GACCCGACCCAACCCGTT
1 GACCCG-----ACCCGTT
128118 GACCCGACCCGTT
1 GACCCGACCCGTT
128131 GACCCG
1 GACCCG
128137 TTGACCGTTG
Statistics
Matches: 54, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
13 42 0.78
18 12 0.22
ACGTcount: A:0.18, C:0.46, G:0.20, T:0.16
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:130606 original size:24 final size:24
Alignment explanation
Indices: 130572--130673 Score: 111
Period size: 24 Copynumber: 4.2 Consensus size: 24
130562 ATTTTCGATT
* *
130572 TGATTTCTGATTTGATACTTGACA
1 TGATTTCTGATCTGATACTTGACC
*
130596 TGGATTT-TGATCTGATA-TCTGACT
1 T-GATTTCTGATCTGATACT-TGACC
*
130620 TGGA-TTCTGATCTGTTACTTGACC
1 T-GATTTCTGATCTGATACTTGACC
*
130644 TGATTTCTGATATGATACTTGACC
1 TGATTTCTGATCTGATACTTGACC
130668 TGATTT
1 TGATTT
130674 ATGTTTTGAT
Statistics
Matches: 67, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
23 5 0.07
24 56 0.84
25 6 0.09
ACGTcount: A:0.22, C:0.15, G:0.19, T:0.45
Consensus pattern (24 bp):
TGATTTCTGATCTGATACTTGACC
Found at i:131868 original size:20 final size:20
Alignment explanation
Indices: 131826--131869 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
131816 AATAGTTTCT
*
131826 GAAACTTAAAATCGCAATAC
1 GAAACTTAAAATCGCAACAC
*
131846 GAAACTTAAAATCGCAACGC
1 GAAACTTAAAATCGCAACAC
131866 GAAA
1 GAAA
131870 ATGACTATCG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.50, C:0.20, G:0.14, T:0.16
Consensus pattern (20 bp):
GAAACTTAAAATCGCAACAC
Found at i:131879 original size:20 final size:20
Alignment explanation
Indices: 131856--131903 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
131846 GAAACTTAAA
131856 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
*
131876 ATCGCAACGCGGAAATGACT
1 ATCGCAACGCGAAAATGACT
131896 ATCGCAAC
1 ATCGCAAC
131904 AAGATAATCG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.38, C:0.27, G:0.21, T:0.15
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGACT
Found at i:131933 original size:19 final size:19
Alignment explanation
Indices: 131909--131980 Score: 57
Period size: 19 Copynumber: 4.0 Consensus size: 19
131899 GCAACAAGAT
131909 AATCGCAATGCGAAATAAA
1 AATCGCAATGCGAAATAAA
131928 AATCGCAA--C----TAGAA
1 AATCGCAATGCGAAATA-AA
* **
131942 AATCGCAACGCGAAACCAA
1 AATCGCAATGCGAAATAAA
131961 AATCGCAATGCGAAACTAAA
1 AATCGCAATGCGAAA-TAAA
131981 TTTGCGTTGC
Statistics
Matches: 40, Mismatches: 5, Indels: 15
0.67 0.08 0.25
Matches are distributed among these distances:
13 2 0.05
14 10 0.25
16 1 0.03
17 1 0.03
19 24 0.60
20 2 0.05
ACGTcount: A:0.50, C:0.22, G:0.15, T:0.12
Consensus pattern (19 bp):
AATCGCAATGCGAAATAAA
Found at i:131933 original size:33 final size:33
Alignment explanation
Indices: 131896--131968 Score: 101
Period size: 33 Copynumber: 2.2 Consensus size: 33
131886 GGAAATGACT
* * *
131896 ATCGCAACAAGATAATCGCAATGCGAAATAAAA
1 ATCGCAACAAGAAAATCGCAACGCGAAACAAAA
* *
131929 ATCGCAACTAGAAAATCGCAACGCGAAACCAAA
1 ATCGCAACAAGAAAATCGCAACGCGAAACAAAA
131962 ATCGCAA
1 ATCGCAA
131969 TGCGAAACTA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.49, C:0.23, G:0.15, T:0.12
Consensus pattern (33 bp):
ATCGCAACAAGAAAATCGCAACGCGAAACAAAA
Found at i:132110 original size:20 final size:20
Alignment explanation
Indices: 132087--132131 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
132077 CGATAGTCAT
132087 TTTCACATTGCGATTTTAAG
1 TTTCACATTGCGATTTTAAG
***
132107 TTTCGTGTTGCGATTTTAAG
1 TTTCACATTGCGATTTTAAG
132127 TTTCA
1 TTTCA
132132 GAAACTATTC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.20, C:0.13, G:0.18, T:0.49
Consensus pattern (20 bp):
TTTCACATTGCGATTTTAAG
Found at i:134051 original size:20 final size:20
Alignment explanation
Indices: 134028--134105 Score: 86
Period size: 20 Copynumber: 4.0 Consensus size: 20
134018 TCTGAAACTT
*
134028 AAAATCGCAACACGAAAATG
1 AAAATCGCAACGCGAAAATG
**
134048 AAAATCGCAACGCGAATTTG
1 AAAATCGCAACGCGAAAATG
** *
134068 ACTATCGCAATGCG-AAATG
1 AAAATCGCAACGCGAAAATG
*
134087 AAAATCGCAACGAGAAAAT
1 AAAATCGCAACGCGAAAAT
134106 CGTAACGCGA
Statistics
Matches: 45, Mismatches: 12, Indels: 2
0.76 0.20 0.03
Matches are distributed among these distances:
19 13 0.29
20 32 0.71
ACGTcount: A:0.47, C:0.19, G:0.18, T:0.15
Consensus pattern (20 bp):
AAAATCGCAACGCGAAAATG
Found at i:134148 original size:14 final size:14
Alignment explanation
Indices: 134129--134166 Score: 76
Period size: 14 Copynumber: 2.7 Consensus size: 14
134119 TAAAATCGCA
134129 TTGCGATTTTGTCG
1 TTGCGATTTTGTCG
134143 TTGCGATTTTGTCG
1 TTGCGATTTTGTCG
134157 TTGCGATTTT
1 TTGCGATTTT
134167 CATTTCGCGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.08, C:0.13, G:0.26, T:0.53
Consensus pattern (14 bp):
TTGCGATTTTGTCG
Found at i:135519 original size:14 final size:15
Alignment explanation
Indices: 135184--135525 Score: 508
Period size: 15 Copynumber: 22.5 Consensus size: 15
135174 TAATAAGGTT
135184 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
135199 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
*
135214 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
135229 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
*
135244 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
135259 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
*
135274 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
135289 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
*
135304 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
135319 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
*
135334 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
135349 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
*
135364 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
*
135379 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
135394 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
*
135409 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
135424 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
*
135439 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
*
135454 ATTT-TTTTTAAATA
1 ATTTATTTTAAAATA
*
135468 ATTTATTATAAAATATGGA
1 ATTTATT-TTAAA-AT--A
135487 TTGATTTATTTTAAAATA
1 ---ATTTATTTTAAAATA
135505 ATTTATTTT-AAATA
1 ATTTATTTTAAAATA
135519 ATTTATT
1 ATTTATT
135526 AGTATGAATT
Statistics
Matches: 299, Mismatches: 20, Indels: 17
0.89 0.06 0.05
Matches are distributed among these distances:
14 24 0.08
15 255 0.85
16 3 0.01
17 2 0.01
18 1 0.00
19 1 0.00
20 2 0.01
21 4 0.01
22 7 0.02
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (15 bp):
ATTTATTTTAAAATA
Found at i:135544 original size:32 final size:31
Alignment explanation
Indices: 135505--135688 Score: 197
Period size: 32 Copynumber: 6.4 Consensus size: 31
135495 TTTTAAAATA
135505 ATTTATTTTAAATAATTTATTAGTATGAATTG
1 ATTTATTTTAAATAATTTATTAGTATG-ATTG
135537 ATTTATTTT--A-AA---A-TA-TA-GATTG
1 ATTTATTTTAAATAATTTATTAGTATGATTG
135559 ATTTATTTTAAATAATTTATTAGTATAGATTG
1 ATTTATTTTAAATAATTTATTAGTAT-GATTG
135591 ATTTATTTT-AA-AA--TA-T-G---GATTG
1 ATTTATTTTAAATAATTTATTAGTATGATTG
135613 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTAT-GATTG
*
135645 ATTTATTTTAAATAATTTATTTGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTAT-GATTG
135677 ATTTATTTTAAA
1 ATTTATTTTAAA
135689 ATATGGATTG
Statistics
Matches: 131, Mismatches: 1, Indels: 40
0.76 0.01 0.23
Matches are distributed among these distances:
22 27 0.21
23 3 0.02
24 5 0.04
25 4 0.03
26 4 0.03
27 2 0.02
28 4 0.03
29 4 0.03
30 5 0.04
31 2 0.02
32 71 0.54
ACGTcount: A:0.36, C:0.00, G:0.10, T:0.53
Consensus pattern (31 bp):
ATTTATTTTAAATAATTTATTAGTATGATTG
Found at i:135558 original size:22 final size:22
Alignment explanation
Indices: 135533--135624 Score: 76
Period size: 22 Copynumber: 3.7 Consensus size: 22
135523 ATTAGTATGA
135533 ATTGATTTATTTTAAAATATAG
1 ATTGATTTATTTTAAAATATAG
135555 ATTGATTTATTTTAAATAATTTATTAG
1 ATTGATTTATTTT-AA-AA--TA-TAG
* *
135582 TATAGATTGATTTATTTTAAAATATGG
1 -ATTGA-T---TTATTTTAAAATATAG
135609 ATTGATTTATTTTAAA
1 ATTGATTTATTTTAAA
135625 TAATTTATTA
Statistics
Matches: 57, Mismatches: 3, Indels: 20
0.71 0.04 0.25
Matches are distributed among these distances:
22 23 0.40
23 2 0.04
24 2 0.04
25 1 0.02
26 6 0.11
27 5 0.09
28 6 0.11
29 1 0.02
30 2 0.04
31 2 0.04
32 7 0.12
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.52
Consensus pattern (22 bp):
ATTGATTTATTTTAAAATATAG
Found at i:135560 original size:69 final size:66
Alignment explanation
Indices: 135364--135580 Score: 254
Period size: 60 Copynumber: 3.3 Consensus size: 66
135354 TTTTAAAATA
* *
135364 ATTTATTATAAAATAATTTATTATAAAATAATTTATTTTAAAATAATTTATTAT-AAA-AT--A-
1 ATTTATTTTAAAATAATTTATTATAAAATAATTT-TTTTGAAATAATTTATTATAAAATATAGAT
135424 --
65 TG
* *
135424 ATTTATTTTAAAATAATTTATTATAAAATAATTTTTTTTAAATAATTTATTATAAAATATGGATT
1 ATTTATTTTAAAATAATTTATTATAAAATAATTTTTTTGAAATAATTTATTATAAAATATAGATT
135489 G
66 G
* * * *
135490 ATTTATTTTAAAATAATTTATT-TTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATA
1 ATTTATTTTAAAATAATTTATTATAAAATAATTT-TT--T-TGAAATAATTTATTATAAAATATA
135554 GATTG
62 GATTG
135559 ATTTATTTT-AAATAATTTATTA
1 ATTTATTTTAAAATAATTTATTA
135581 GTATAGATTG
Statistics
Matches: 137, Mismatches: 8, Indels: 15
0.86 0.05 0.09
Matches are distributed among these distances:
59 18 0.13
60 36 0.26
61 2 0.01
63 1 0.01
65 10 0.07
66 24 0.18
68 13 0.09
69 33 0.24
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.52
Consensus pattern (66 bp):
ATTTATTTTAAAATAATTTATTATAAAATAATTTTTTTGAAATAATTTATTATAAAATATAGATT
G
Found at i:135744 original size:14 final size:14
Alignment explanation
Indices: 135725--135812 Score: 50
Period size: 14 Copynumber: 5.7 Consensus size: 14
135715 GTATGGATTG
135725 ATTTATTTTAAATA
1 ATTTATTTTAAATA
* * *
135739 ATTTATTAGTATGTATTG
1 ATTTATT--T-T-AAATA
135757 ATTTATTTTAAATA
1 ATTTATTTTAAATA
* * *
135771 ATTTATTAGTATGGATTG
1 ATTTATT--T-T-AAATA
135789 ATTTATTTTAAATA
1 ATTTATTTTAAATA
135803 ATTTATTTTA
1 ATTTATTTTA
135813 TGGATTGATT
Statistics
Matches: 54, Mismatches: 12, Indels: 16
0.66 0.15 0.20
Matches are distributed among these distances:
14 28 0.52
15 2 0.04
16 4 0.07
17 2 0.04
18 18 0.33
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.57
Consensus pattern (14 bp):
ATTTATTTTAAATA
Found at i:135747 original size:112 final size:109
Alignment explanation
Indices: 135554--136041 Score: 508
Period size: 112 Copynumber: 4.3 Consensus size: 109
135544 TTAAAATATA
* * *
135554 GATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTGATTTAT
1 GATTGATTTATTTTAAATAA-TTA-T-GGATTGATTGATTTATTTTAAAATATAGATTGATTTA-
* *
135619 TTTAAATAATTTA-TTAGTATGGATTGATTTATTTTAAATAATTTATTTGTATG
62 -TT--AT--TGTAGTT-GTATGGATTGATTTATTTTAAATAATTTATTAGTATG
* * *** *
135672 GATTGATTTATTTT-AA-AA-TATGGATTGATTTA-TTATTGTAGTTGTATGGATTGATTTATTT
1 GATTGATTTATTTTAAATAATTATGGATTGATTGATTTATTTTA-AAATATAGATTGATTTA--T
* *
135733 TAAATAATTTA-TTAGTATGTATTGATTTATTTTAAATAATTTATTAGTATG
63 T--AT--TGTAGTT-GTATGGATTGATTTATTTTAAATAATTTATTAGTATG
** *
135784 GATTGATTTATTTTAAATAATTTATTTTATGGATTGATTTATTTTAAAATATAGATTGATTTATT
1 GATTGATTTATTTTAAATAA-TTA-TGGATTGATTGATTTATTTTAAAATATAGATTGATTTATT
135849 ATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATG
64 ATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATG
**
135895 GATTGATTTATTTTAAATAATTTATTTATATGGATTGATTTATTTTAAAATATAGATTGATTTAT
1 GATTGATTTATTTTAAATAA-TTATGGAT-T-GATTGATTTATTTTAAAATATAGATTGATTTAT
** *
135960 TATTGTAGTTGTATAAATTGATTTATTTTAAATAATTTATTAGTATC
63 TATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATG
*
136007 GATTGATTTATTTT-AA-AA-TATGGATTGATTTATTT
1 GATTGATTTATTTTAAATAATTATGGATTGATTGATTT
136042 TAAATAATTT
Statistics
Matches: 333, Mismatches: 27, Indels: 32
0.85 0.07 0.08
Matches are distributed among these distances:
106 8 0.02
107 1 0.00
108 5 0.02
110 7 0.02
111 72 0.22
112 181 0.54
113 5 0.02
114 4 0.01
115 2 0.01
116 4 0.01
117 23 0.07
118 21 0.06
ACGTcount: A:0.33, C:0.00, G:0.13, T:0.54
Consensus pattern (109 bp):
GATTGATTTATTTTAAATAATTATGGATTGATTGATTTATTTTAAAATATAGATTGATTTATTAT
TGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATG
Found at i:135834 original size:32 final size:32
Alignment explanation
Indices: 135715--135831 Score: 209
Period size: 32 Copynumber: 3.7 Consensus size: 32
135705 TATTGTAGTT
135715 GTATGGATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
*
135747 GTATGTATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
135779 GTATGGATTGATTTATTTTAAATAATTTATT-
1 GTATGGATTGATTTATTTTAAATAATTTATTA
*
135810 TTATGGATTGATTTATTTTAAA
1 GTATGGATTGATTTATTTTAAA
135832 ATATAGATTG
Statistics
Matches: 82, Mismatches: 3, Indels: 1
0.95 0.03 0.01
Matches are distributed among these distances:
31 21 0.26
32 61 0.74
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.55
Consensus pattern (32 bp):
GTATGGATTGATTTATTTTAAATAATTTATTA
Found at i:135869 original size:143 final size:142
Alignment explanation
Indices: 135505--135943 Score: 648
Period size: 143 Copynumber: 3.1 Consensus size: 142
135495 TTTTAAAATA
* *
135505 ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATAGATTGATTTATTTTAA
1 ATTTATTTTAAATAATTTATT-TTATGGATTGATTTATTTTAAAATATAGATTGATTTA--TT--
* *
135570 ATAATTTA-TTAGTATAGATTGATTTATTTT-AA-AA--TA-T-G---GATTGATTTATTTTAAA
61 AT--TGTAGTT-GTATGGATTGATTTATTTTAAATAATTTATTAGTATGATTGATTTATTTTAAA
135625 TAATTTATTAGTATGGATTG
123 TAATTTATTAGTATGGATTG
*
135645 ATTTATTTTAAATAATTTATTTGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTATTG
1 ATTTATTTTAAATAATTTATTT-TATGGATTGATTTATTTTAAAATATAGATTGATTTATTATTG
135710 TAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATGTATTGATTTATTTTAAATAATTT
65 TAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATG-ATTGATTTATTTTAAATAATTT
135775 ATTAGTATGGATTG
129 ATTAGTATGGATTG
135789 ATTTATTTTAAATAATTTATTTTATGGATTGATTTATTTTAAAATATAGATTGATTTATTATTGT
1 ATTTATTTTAAATAATTTATTTTATGGATTGATTTATTTTAAAATATAGATTGATTTATTATTGT
135854 AGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAATAATTTA
66 AGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTAT-GATTGATTTATTTTAAATAATTTA
135919 TTTA-TATGGATTG
130 -TTAGTATGGATTG
135932 ATTTATTTTAAA
1 ATTTATTTTAAA
135944 ATATAGATTG
Statistics
Matches: 279, Mismatches: 6, Indels: 25
0.90 0.02 0.08
Matches are distributed among these distances:
134 21 0.08
135 4 0.01
136 4 0.01
138 4 0.01
139 1 0.00
140 56 0.20
143 127 0.46
144 62 0.22
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.54
Consensus pattern (142 bp):
ATTTATTTTAAATAATTTATTTTATGGATTGATTTATTTTAAAATATAGATTGATTTATTATTGT
AGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATGATTGATTTATTTTAAATAATTTAT
TAGTATGGATTG
Found at i:135899 original size:32 final size:33
Alignment explanation
Indices: 135858--135943 Score: 158
Period size: 32 Copynumber: 2.7 Consensus size: 33
135848 TATTGTAGTT
135858 GTATGGATTGATTTATTTTAAATAATTTA-TTA
1 GTATGGATTGATTTATTTTAAATAATTTATTTA
135890 GTATGGATTGATTTATTTTAAATAATTTATTTA
1 GTATGGATTGATTTATTTTAAATAATTTATTTA
135923 -TATGGATTGATTTATTTTAAA
1 GTATGGATTGATTTATTTTAAA
135944 ATATAGATTG
Statistics
Matches: 53, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
32 50 0.94
33 3 0.06
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.53
Consensus pattern (33 bp):
GTATGGATTGATTTATTTTAAATAATTTATTTA
Found at i:135901 original size:255 final size:251
Alignment explanation
Indices: 135505--136023 Score: 782
Period size: 255 Copynumber: 2.0 Consensus size: 251
135495 TTTTAAAATA
135505 ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATAGATTGATTTATTTTAA
1 ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATAGATTGATTTATTTTAA
*
135570 ATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAATAATTTATTA
66 ATAA-TTATTAGTATAGATTGATTTATTGTAAAATATGGATTGATTTATTTTAAATAATTTATTA
* *
135635 GTATGGATTGATTTATTTTAAATAATTTATTTGTATGGATTGATTTATTTTAAAATATGGATTGA
130 GTATGGATTGATTTATTTTAAATAATTTATTTATATGGATTGATTTATTTTAAAATATAGATTGA
**
135700 TTTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTAT-GTATTG
195 TTTATTATTGTAGTTGTATAAATTGATTTATTTTAAATAATTTATTAGTATCG-ATTG
*
135757 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTTTATGGATTGAT
1 ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTT-AA-AA--TA---TA--GATTGAT
* * ***
135822 TTATTTT-AA-AA-TA-TAG-ATTGATTTA-TTATTGTAGTTGTATGGATTGATTTATTTTAAAT
57 TTATTTTAAATAATTATTAGTATAGATTGATTTATTGTA-AAATATGGATTGATTTATTTTAAAT
135881 AATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTTATATGGATTGATTTATTTTAAAAT
121 AATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTTATATGGATTGATTTATTTTAAAAT
135946 ATAGATTGATTTATTATTGTAGTTGTATAAATTGATTTATTTTAAATAATTTATTAGTATCGATT
186 ATAGATTGATTTATTATTGTAGTTGTATAAATTGATTTATTTTAAATAATTTATTAGTATCGATT
136011 G
251 G
136012 ATTTATTTTAAA
1 ATTTATTTTAAA
136024 ATATGGATTG
Statistics
Matches: 245, Mismatches: 11, Indels: 19
0.89 0.04 0.07
Matches are distributed among these distances:
252 40 0.16
253 2 0.01
254 9 0.04
255 166 0.68
256 6 0.02
257 2 0.01
259 4 0.02
260 2 0.01
261 14 0.06
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.54
Consensus pattern (251 bp):
ATTTATTTTAAATAATTTATTAGTATGAATTGATTTATTTTAAAATATAGATTGATTTATTTTAA
ATAATTATTAGTATAGATTGATTTATTGTAAAATATGGATTGATTTATTTTAAATAATTTATTAG
TATGGATTGATTTATTTTAAATAATTTATTTATATGGATTGATTTATTTTAAAATATAGATTGAT
TTATTATTGTAGTTGTATAAATTGATTTATTTTAAATAATTTATTAGTATCGATTG
Found at i:135935 original size:18 final size:18
Alignment explanation
Indices: 135882--135939 Score: 54
Period size: 18 Copynumber: 3.4 Consensus size: 18
135872 ATTTTAAATA
135882 ATTTA-TTAGTATGGATTG
1 ATTTATTTA-TATGGATTG
* *
135900 ATTTATTT-TA---AATA
1 ATTTATTTATATGGATTG
135914 ATTTATTTATATGGATTG
1 ATTTATTTATATGGATTG
135932 ATTTATTT
1 ATTTATTT
135940 TAAAATATAG
Statistics
Matches: 31, Mismatches: 4, Indels: 10
0.69 0.09 0.22
Matches are distributed among these distances:
14 10 0.32
15 2 0.06
17 2 0.06
18 15 0.48
19 2 0.06
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.57
Consensus pattern (18 bp):
ATTTATTTATATGGATTG
Found at i:136106 original size:30 final size:31
Alignment explanation
Indices: 136070--136127 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
136060 ATTTGTATGG
* *
136070 ATTATTTAAAT-TTAGTATTGTAAAACTAAA
1 ATTATTTAAATCTCAGTATTGCAAAACTAAA
136100 ATTATTTAAATCTCAGTATTGCAAAACT
1 ATTATTTAAATCTCAGTATTGCAAAACT
136128 CTTTTAAGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 11 0.44
31 14 0.56
ACGTcount: A:0.43, C:0.09, G:0.07, T:0.41
Consensus pattern (31 bp):
ATTATTTAAATCTCAGTATTGCAAAACTAAA
Found at i:141688 original size:37 final size:37
Alignment explanation
Indices: 141625--141703 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
141615 ACATACATAT
*
141625 TCGTACACACAAACGCAGCATAGTCGGACAAGAATGC
1 TCGTACACACAAACGCAACATAGTCGGACAAGAATGC
* * *
141662 TCGTACACATAAATGCAACATGGTCGGACAAGAATGC
1 TCGTACACACAAACGCAACATAGTCGGACAAGAATGC
141699 TCGTA
1 TCGTA
141704 TCTGGAAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.37, C:0.24, G:0.22, T:0.18
Consensus pattern (37 bp):
TCGTACACACAAACGCAACATAGTCGGACAAGAATGC
Found at i:141868 original size:19 final size:20
Alignment explanation
Indices: 141844--141894 Score: 77
Period size: 19 Copynumber: 2.6 Consensus size: 20
141834 AATGACCAAT
141844 AAAATCGCAACGCGATAT-C
1 AAAATCGCAACGCGATATAC
* *
141863 AAAATCGCAACGCGATTTAG
1 AAAATCGCAACGCGATATAC
141883 AAAATCGCAACG
1 AAAATCGCAACG
141895 TTAAAAAGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 17 0.59
20 12 0.41
ACGTcount: A:0.43, C:0.24, G:0.18, T:0.16
Consensus pattern (20 bp):
AAAATCGCAACGCGATATAC
Found at i:141888 original size:20 final size:20
Alignment explanation
Indices: 141844--142161 Score: 156
Period size: 20 Copynumber: 15.6 Consensus size: 20
141834 AATGACCAAT
* *
141844 AAAATCGCAACGCGATAT-C
1 AAAATCGCAACGCGATTTAG
141863 AAAATCGCAACGCGATTTAG
1 AAAATCGCAACGCGATTTAG
** ***
141883 AAAATCGCAACGTTAAAAAG
1 AAAATCGCAACGCGATTTAG
**
141903 AAAATCGCAACG-G-TCAAAAG
1 AAAATCGCAACGCGAT--TTAG
* * **
141923 AAAATCGCAACGCAAGCTTCC
1 AAAATCGCAACGCGA-TTTAG
**
141944 AAGTTCGCAACGCGATTTAGAAG
1 AAAATCGCAACGCGATTT---AG
* * *
141967 AAAATCGCAATGCGATTGAT
1 AAAATCGCAACGCGATTTAG
* * *
141987 AGAATCGCAATGCGATTTAT
1 AAAATCGCAACGCGATTTAG
* * * *
142007 AGAATCGCAATGCGATTGAT
1 AAAATCGCAACGCGATTTAG
* * *
142027 AGAATCGCAATGCGATTTAT
1 AAAATCGCAACGCGATTTAG
* * *
142047 AGAATCGCAATGCGATTGAG
1 AAAATCGCAACGCGATTTAG
* *
142067 AGAGTCGCAACGCGATTTAGAAG
1 AAAATCGCAACGCGATTT---AG
* * * *
142090 AAAATTGCAATGCGACTGAG
1 AAAATCGCAACGCGATTTAG
* * * *
142110 AGAATCGCAATGCGACTGAG
1 AAAATCGCAACGCGATTTAG
*
142130 AGAATCGCAACGCGATTTAG
1 AAAATCGCAACGCGATTTAG
142150 AAAATCGCAACG
1 AAAATCGCAACG
142162 TTAAAAAGAA
Statistics
Matches: 240, Mismatches: 47, Indels: 23
0.77 0.15 0.07
Matches are distributed among these distances:
19 17 0.07
20 183 0.76
21 12 0.05
23 28 0.12
ACGTcount: A:0.39, C:0.19, G:0.22, T:0.19
Consensus pattern (20 bp):
AAAATCGCAACGCGATTTAG
Found at i:142022 original size:40 final size:40
Alignment explanation
Indices: 141969--142159 Score: 238
Period size: 40 Copynumber: 4.7 Consensus size: 40
141959 TTTAGAAGAA
*
141969 AATCGCAATGCGATTGATAGAATCGCAATGCGATTTATAG
1 AATCGCAATGCGATTGAGAGAATCGCAATGCGATTTATAG
*
142009 AATCGCAATGCGATTGATAGAATCGCAATGCGATTTATAG
1 AATCGCAATGCGATTGAGAGAATCGCAATGCGATTTATAG
* * *
142049 AATCGCAATGCGATTGAGAGAGTCGCAACGCGATTTAGAAG
1 AATCGCAATGCGATTGAGAGAATCGCAATGCGATTTA-TAG
* * * * *
142090 AAAATTGCAATGCGACTGAGAGAATCGCAATGCGACTGAGAG
1 --AATCGCAATGCGATTGAGAGAATCGCAATGCGATTTATAG
* * *
142132 AATCGCAACGCGATTTAGAAAATCGCAA
1 AATCGCAATGCGATTGAGAGAATCGCAA
142160 CGTTAAAAAG
Statistics
Matches: 132, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
40 97 0.73
41 2 0.02
42 2 0.02
43 31 0.23
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.22
Consensus pattern (40 bp):
AATCGCAATGCGATTGAGAGAATCGCAATGCGATTTATAG
Found at i:142179 original size:123 final size:122
Alignment explanation
Indices: 141948--142167 Score: 309
Period size: 123 Copynumber: 1.8 Consensus size: 122
141938 GCTTCCAAGT
* * * * *
141948 TCGCAACGCGATTTAGAAGAAAATCGCAATGCGATTGATAGAATCGCAATGCGATTTATAGAATC
1 TCGCAACGCGATTTAGAAGAAAATCGCAATGCGACTGAGAGAATCGCAATGCGACTGAGAGAATC
* * * * *
142013 GCAATGCGATTGATAGAATCGCAATGCGATTTATAGAATCGCAATGCGATTGAGAGAG
66 GCAACGCGATTGAGAAAATCGCAA-GCGATTAAAAGAATCGCAATGCGATTGAGAGAG
*
142071 TCGCAACGCGATTTAGAAGAAAATTGCAATGCGACTGAGAGAATCGCAATGCGACTGAGAGAATC
1 TCGCAACGCGATTTAGAAGAAAATCGCAATGCGACTGAGAGAATCGCAATGCGACTGAGAGAATC
*
142136 GCAACGCGATTTAGAAAATCGCAA-CG-TTAAAA
66 GCAACGCGATTGAGAAAATCGCAAGCGATTAAAA
142168 AGAAAATCGC
Statistics
Matches: 85, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
120 4 0.05
121 2 0.02
123 79 0.93
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (122 bp):
TCGCAACGCGATTTAGAAGAAAATCGCAATGCGACTGAGAGAATCGCAATGCGACTGAGAGAATC
GCAACGCGATTGAGAAAATCGCAAGCGATTAAAAGAATCGCAATGCGATTGAGAGAG
Found at i:142354 original size:6 final size:6
Alignment explanation
Indices: 142345--142460 Score: 225
Period size: 6 Copynumber: 19.5 Consensus size: 6
142335 TATTACCATT
142345 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
142393 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
142441 ACCACG ACCACG ACC-CG ACC
1 ACCACG ACCACG ACCACG ACC
142461 CGAGACGACG
Statistics
Matches: 110, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
5 5 0.05
6 105 0.95
ACGTcount: A:0.33, C:0.51, G:0.16, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:143053 original size:51 final size:52
Alignment explanation
Indices: 142985--143109 Score: 211
Period size: 51 Copynumber: 2.4 Consensus size: 52
142975 AACTTATGAA
142985 GAATAATGATATTGGGAACAAGTGTTGGTAATGCTCAATCCCACATAGTATTG
1 GAATAATGATATTGGGAACAAGTGTTGGTAATGCTCAATCCCACA-AGTATTG
143038 G-A-AAT-ACTATTGGGAACAAGTGTTGGTAATGCTCAATCCCACAAGTATTG
1 GAATAATGA-TATTGGGAACAAGTGTTGGTAATGCTCAATCCCACAAGTATTG
143088 GAATAATGATATTGGGAACAAG
1 GAATAATGATATTGGGAACAAG
143110 GGGGACTCTC
Statistics
Matches: 68, Mismatches: 0, Indels: 9
0.88 0.00 0.12
Matches are distributed among these distances:
50 9 0.13
51 40 0.59
52 17 0.25
53 2 0.03
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.28
Consensus pattern (52 bp):
GAATAATGATATTGGGAACAAGTGTTGGTAATGCTCAATCCCACAAGTATTG
Found at i:143081 original size:25 final size:25
Alignment explanation
Indices: 143002--143088 Score: 77
Period size: 25 Copynumber: 3.4 Consensus size: 25
142992 GATATTGGGA
*
143002 ACAAGTGTTGGTAATGCTCAATCCC
1 ACAAGTATTGGTAATGCTCAATCCC
* * * ***
143027 ACATAGTATTGGAAATACT-ATTGGGA
1 ACA-AGTATTGGTAATGCTCAAT-CCC
*
143053 ACAAGTGTTGGTAATGCTCAATCCC
1 ACAAGTATTGGTAATGCTCAATCCC
143078 ACAAGTATTGG
1 ACAAGTATTGG
143089 AATAATGATA
Statistics
Matches: 44, Mismatches: 15, Indels: 6
0.68 0.23 0.09
Matches are distributed among these distances:
25 27 0.61
26 17 0.39
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (25 bp):
ACAAGTATTGGTAATGCTCAATCCC
Found at i:143161 original size:6 final size:6
Alignment explanation
Indices: 143145--143200 Score: 105
Period size: 6 Copynumber: 9.5 Consensus size: 6
143135 CGCCGTCTCG
143145 GGTCG- GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT
143192 GGTCGT GGT
1 GGTCGT GGT
143201 AATACGTGTC
Statistics
Matches: 50, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
5 5 0.10
6 45 0.90
ACGTcount: A:0.00, C:0.16, G:0.52, T:0.32
Consensus pattern (6 bp):
GGTCGT
Found at i:149713 original size:31 final size:31
Alignment explanation
Indices: 149672--149750 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
149662 ATCGATGTCG
* *
149672 AGTGATCAATTTGTTACAAATCGATAACGTT
1 AGTGACCAATTTGTTACAAATCGATAACATT
* *
149703 AGTGACCAATTTGTTATAAATTGATAACATT
1 AGTGACCAATTTGTTACAAATCGATAACATT
149734 AGTGACCAATTTGTTAC
1 AGTGACCAATTTGTTAC
149751 TTTTAAAACT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (31 bp):
AGTGACCAATTTGTTACAAATCGATAACATT
Found at i:150730 original size:41 final size:41
Alignment explanation
Indices: 150673--150896 Score: 229
Period size: 41 Copynumber: 5.4 Consensus size: 41
150663 AAAATGACCA
*
150673 ACAAAATCGCAACGCGATTATGACTATCGCAATGCGATAAT
1 ACAAAATCGCAACGCGATTATGACTATCGCAATGCGATAAC
* * * *
150714 ACAAAATCGCAACGCGATAAT-ACAAAATCGCAACGCGAT-TC
1 ACAAAATCGCAACGCGATTATGAC--TATCGCAATGCGATAAC
** ** * * * * *
150755 TGATTATCACAATGCGA-TAAGACAAAATCACAATGCGATAAC
1 ACAAAATCGCAACGCGATTATGAC--TATCGCAATGCGATAAC
* *
150797 ACAAAATCGCAAAGCGATTCTGACTATCGCAATGCGATAAC
1 ACAAAATCGCAACGCGATTATGACTATCGCAATGCGATAAC
* *
150838 ACAAAATCGCAACGCGATTCTGACTATCGCAATGCTATAAC
1 ACAAAATCGCAACGCGATTATGACTATCGCAATGCGATAAC
150879 ACAAAATCGCAACGCGAT
1 ACAAAATCGCAACGCGAT
150897 AACACATAAT
Statistics
Matches: 150, Mismatches: 28, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
40 3 0.02
41 119 0.79
42 24 0.16
43 4 0.03
ACGTcount: A:0.41, C:0.24, G:0.16, T:0.19
Consensus pattern (41 bp):
ACAAAATCGCAACGCGATTATGACTATCGCAATGCGATAAC
Found at i:150770 original size:62 final size:62
Alignment explanation
Indices: 150673--150855 Score: 285
Period size: 62 Copynumber: 3.0 Consensus size: 62
150663 AAAATGACCA
* * *
150673 ACAAAATCGCAACGCGATTATGACTATCGCAATGCGATAATACAAAATCGCAACGCGATAAT
1 ACAAAATCGCAACGCGATTCTGACTATCGCAATGCGATAACACAAAATCGCAACGCGATAAC
* * * * *
150735 ACAAAATCGCAACGCGATTCTGATTATCACAATGCGATAAGACAAAATCACAATGCGATAAC
1 ACAAAATCGCAACGCGATTCTGACTATCGCAATGCGATAACACAAAATCGCAACGCGATAAC
*
150797 ACAAAATCGCAAAGCGATTCTGACTATCGCAATGCGATAACACAAAATCGCAACGCGAT
1 ACAAAATCGCAACGCGATTCTGACTATCGCAATGCGATAACACAAAATCGCAACGCGAT
150856 TCTGACTATC
Statistics
Matches: 108, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 108 1.00
ACGTcount: A:0.42, C:0.23, G:0.16, T:0.19
Consensus pattern (62 bp):
ACAAAATCGCAACGCGATTCTGACTATCGCAATGCGATAACACAAAATCGCAACGCGATAAC
Found at i:150827 original size:20 final size:20
Alignment explanation
Indices: 150802--150869 Score: 64
Period size: 20 Copynumber: 3.4 Consensus size: 20
150792 ATAACACAAA
150802 ATCGCAAAGCGATTCTGACT
1 ATCGCAAAGCGATTCTGACT
* * ** **
150822 ATCGCAATGCGATAACACAAA
1 ATCGCAAAGCGAT-TCTGACT
*
150843 ATCGCAACGCGATTCTGACT
1 ATCGCAAAGCGATTCTGACT
150863 ATCGCAA
1 ATCGCAA
150870 TGCTATAACA
Statistics
Matches: 35, Mismatches: 12, Indels: 2
0.71 0.24 0.04
Matches are distributed among these distances:
20 21 0.60
21 14 0.40
ACGTcount: A:0.35, C:0.26, G:0.18, T:0.21
Consensus pattern (20 bp):
ATCGCAAAGCGATTCTGACT
Found at i:151038 original size:6 final size:6
Alignment explanation
Indices: 151027--151054 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
151017 AGACACGTAT
151027 GACCAC GACCAC GACCAC GACCAC GACC
1 GACCAC GACCAC GACCAC GACCAC GACC
151055 CGAGACGGCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.32, C:0.50, G:0.18, T:0.00
Consensus pattern (6 bp):
GACCAC
Found at i:151370 original size:19 final size:19
Alignment explanation
Indices: 151346--151454 Score: 101
Period size: 19 Copynumber: 5.4 Consensus size: 19
151336 TTATTTTGGA
151346 TTTTTCACTATCGCAACAC
1 TTTTTCACTATCGCAACAC
151365 TTTTTCACTATCGCAACAACAC
1 TTTTTCACTATCG---CAACAC
*
151387 GTTTTTCAAACTCTCGCAACAC
1 -TTTTTC--ACTATCGCAACAC
* * *
151409 ATTTTAACTATCACAACAC
1 TTTTTCACTATCGCAACAC
* *
151428 ATTTTAACTATCGCAACAC
1 TTTTTCACTATCGCAACAC
151447 ATTTTTCA
1 -TTTTTCA
151455 AAATCGCGTT
Statistics
Matches: 75, Mismatches: 8, Indels: 13
0.78 0.08 0.14
Matches are distributed among these distances:
19 42 0.56
20 5 0.07
21 4 0.05
22 12 0.16
23 6 0.08
25 6 0.08
ACGTcount: A:0.32, C:0.28, G:0.05, T:0.35
Consensus pattern (19 bp):
TTTTTCACTATCGCAACAC
Found at i:157342 original size:29 final size:30
Alignment explanation
Indices: 157272--157331 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
157262 CAATTTAAGG
*
157272 CAAAATGGTTTTTGGACTTGAATTGAATTTA
1 CAAAAT-GTTTTTGGACTTGAAATGAATTTA
157303 CAAAATGTTTTTGGACTT-AAATGAATTTA
1 CAAAATGTTTTTGGACTTGAAATGAATTTA
157332 TTCAAAGTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 10 0.36
30 12 0.43
31 6 0.21
ACGTcount: A:0.35, C:0.07, G:0.17, T:0.42
Consensus pattern (30 bp):
CAAAATGTTTTTGGACTTGAAATGAATTTA
Found at i:157494 original size:19 final size:19
Alignment explanation
Indices: 157470--157537 Score: 90
Period size: 19 Copynumber: 3.8 Consensus size: 19
157460 TTGCTCGGAT
*
157470 GGTATCTATACCCCCCAGG
1 GGTATCCATACCCCCCAGG
157489 GGTATCCATA--CCCC--G
1 GGTATCCATACCCCCCAGG
*
157504 GGTATCGATACCCCCCAGG
1 GGTATCCATACCCCCCAGG
157523 GGTATCCATACCCCC
1 GGTATCCATACCCCC
157538 TGACTGCAAC
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
15 10 0.24
17 8 0.19
19 24 0.57
ACGTcount: A:0.21, C:0.40, G:0.21, T:0.19
Consensus pattern (19 bp):
GGTATCCATACCCCCCAGG
Found at i:157508 original size:15 final size:16
Alignment explanation
Indices: 157482--157536 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 16
157472 TATCTATACC
157482 CCCCAGGGGTATCCATA
1 CCCCA-GGGTATCCATA
*
157499 CCCC-GGGTATCGATA
1 CCCCAGGGTATCCATA
157514 CCCCCCAGGGGTATCCATA
1 --CCCCA-GGGTATCCATA
157533 CCCC
1 CCCC
157537 CTGACTGCAA
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
15 10 0.31
17 12 0.38
19 10 0.31
ACGTcount: A:0.20, C:0.42, G:0.22, T:0.16
Consensus pattern (16 bp):
CCCCAGGGTATCCATA
Found at i:157515 original size:34 final size:34
Alignment explanation
Indices: 157470--157536 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
157460 TTGCTCGGAT
*
157470 GGTATCTATACCCCCCAGGGGTATCCATACCCCG
1 GGTATCGATACCCCCCAGGGGTATCCATACCCCG
157504 GGTATCGATACCCCCCAGGGGTATCCATACCCC
1 GGTATCGATACCCCCCAGGGGTATCCATACCCC
157537 CTGACTGCAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.21, C:0.39, G:0.21, T:0.19
Consensus pattern (34 bp):
GGTATCGATACCCCCCAGGGGTATCCATACCCCG
Found at i:157676 original size:20 final size:22
Alignment explanation
Indices: 157638--157677 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
157628 TTTGAGCAGA
157638 AAAATCATCCCCAAACGGCTCC
1 AAAATCATCCCCAAACGGCTCC
157660 AAAA-CATCCCC-AACGGCT
1 AAAATCATCCCCAAACGGCT
157678 ATATACGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 7 0.39
21 7 0.39
22 4 0.22
ACGTcount: A:0.38, C:0.40, G:0.10, T:0.12
Consensus pattern (22 bp):
AAAATCATCCCCAAACGGCTCC
Found at i:158845 original size:19 final size:20
Alignment explanation
Indices: 158821--158868 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
158811 AACGATTTTC
* *
158821 TTTTGAAAGCAAAAATG-GA
1 TTTTGAAAACAAAAATGAAA
*
158840 TTTTGAAAACCAAAATGAAA
1 TTTTGAAAACAAAAATGAAA
158860 TTTTGAAAA
1 TTTTGAAAA
158869 ATGATTTAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 15 0.60
20 10 0.40
ACGTcount: A:0.50, C:0.06, G:0.15, T:0.29
Consensus pattern (20 bp):
TTTTGAAAACAAAAATGAAA
Found at i:160156 original size:29 final size:30
Alignment explanation
Indices: 160086--160145 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
160076 CAATTTAAGG
160086 CAAAATGGTTTTTGGACTTGAATTGATTTTA
1 CAAAAT-GTTTTTGGACTTGAATTGATTTTA
*
160117 CAAAATGTTTTTGGACTT-AATTGAATTTA
1 CAAAATGTTTTTGGACTTGAATTGATTTTA
160146 TTCAAAGTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 10 0.36
30 12 0.43
31 6 0.21
ACGTcount: A:0.32, C:0.07, G:0.17, T:0.45
Consensus pattern (30 bp):
CAAAATGTTTTTGGACTTGAATTGATTTTA
Found at i:160457 original size:20 final size:22
Alignment explanation
Indices: 160419--160458 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
160409 TTTGAGTAGA
160419 AAAATCATCCCCAAACGGCTCT
1 AAAATCATCCCCAAACGGCTCT
160441 AAAA-CATCCCC-AACGGCT
1 AAAATCATCCCCAAACGGCT
160459 ATATACGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 7 0.39
21 7 0.39
22 4 0.22
ACGTcount: A:0.38, C:0.38, G:0.10, T:0.15
Consensus pattern (22 bp):
AAAATCATCCCCAAACGGCTCT
Found at i:166824 original size:2 final size:2
Alignment explanation
Indices: 166817--166868 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
166807 CTAGAAATTG
166817 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
166859 AT AT AT AT AT
1 AT AT AT AT AT
166869 TGCAACCGGT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Done.