genome.fa.s2486.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002486.1 Hibiscus syriacus cultivar Beakdansim tig00005072_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79928

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56--353	144	2.1	144	97	0	560	36	19	13	29	1.90
341--428	35	2.5	37	81	7	110	42	10	10	37	1.73
342--429	18	4.9	18	76	5	90	42	10	10	37	1.73
630--654	11	2.3	11	100	0	50	36	0	0	64	0.94
5744--6040	77	4.0	75	83	7	347	41	12	13	32	1.82
5847--6040	70	2.7	71	84	7	259	42	14	12	30	1.83
6050--6477	182	2.3	183	87	1	617	44	11	12	31	1.78
7152--7191	18	2.2	18	86	0	53	32	2	0	65	1.06
7151--7188	17	2.3	17	86	4	51	34	2	0	63	1.09
9857--10058	70	2.9	70	91	0	316	52	16	16	13	1.74
10765--10872	53	2.0	53	100	0	216	28	20	14	36	1.92
13667--13700	17	2.0	17	88	0	50	20	5	2	70	1.21
22880--22912	16	2.0	17	88	5	50	51	0	0	48	1.00
32718--32760	14	3.1	14	86	0	59	58	16	11	13	1.64
39042--39080	20	2.0	20	90	10	62	20	5	5	69	1.28
57493--58027	192	2.8	192	95	0	944	39	16	14	29	1.89
63843--63944	50	2.0	50	96	0	186	32	8	11	47	1.71
66814--66865	18	2.8	18	91	2	68	17	48	17	17	1.82
66827--66865	18	2.2	18	100	0	78	15	48	17	17	1.81
67063--67087	2	12.5	2	100	0	50	48	0	0	52	1.00
67120--67169	16	3.0	16	80	16	57	66	2	32	0	1.03
68864--68914	14	3.6	14	81	7	59	35	0	1	62	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68863--68914	10	5.6	9	76	15	52	34	0	1	63	1.06
69975--70020	24	2.0	23	91	4	74	60	6	2	30	1.34
70004--70069	34	1.9	34	93	0	114	53	4	4	37	1.42
70901--70968	25	3.0	20	80	18	64	58	4	2	33	1.33
71306--71570	141	1.9	141	88	3	408	23	27	25	22	2.00
72363--72441	32	2.5	32	97	0	149	16	15	29	39	1.89

Tables:   1

The End!