genome.fa.s2487.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002487.1 Hibiscus syriacus cultivar Beakdansim tig00005073_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  171479

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12080--12123	13	3.5	13	90	6	72	18	52	15	13	1.75
12157--12217	24	2.5	26	77	17	69	55	0	0	44	0.99
12175--12214	19	2.1	19	85	0	53	55	0	0	45	0.99
12235--12280	12	3.9	12	88	2	67	30	47	10	10	1.73
12235--12280	24	2.0	24	91	4	76	30	47	10	10	1.73
15699--15747	25	2.0	25	87	0	71	69	6	2	22	1.21
15780--15842	28	2.2	28	83	5	74	46	1	4	47	1.33
18784--18822	14	2.8	14	84	0	51	35	28	12	23	1.91
27286--27412	64	2.0	64	96	0	236	32	14	17	35	1.91
31199--31232	16	2.1	16	100	0	68	32	0	41	26	1.56
31285--31320	2	18.0	2	94	0	63	50	2	0	47	1.15
34270--34349	4	19.2	4	74	23	60	75	3	0	21	0.96
34272--34345	15	5.1	15	76	13	68	75	4	0	20	0.96
34309--34454	37	4.0	34	71	19	100	68	2	6	23	1.23
35039--35177	37	3.8	37	81	10	160	30	14	12	42	1.83
35709--36264	105	5.3	105	88	3	735	22	17	25	33	1.96
36651--36717	29	2.3	26	76	20	62	29	17	8	43	1.80
36832--37327	65	7.3	65	75	11	316	38	11	19	29	1.87
37000--37347	36	10.0	36	74	14	318	39	13	19	27	1.89
36949--37349	138	2.9	138	86	1	545	39	12	19	27	1.88
37036--37220	102	1.8	102	88	2	282	40	13	17	28	1.88
37131--37347	73	3.1	73	78	16	276	39	12	19	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38305--38359	22	2.5	22	96	0	101	25	12	25	36	1.91
39603--39647	23	2.0	23	86	0	63	26	28	24	20	1.99
40260--40405	65	2.2	64	90	2	220	15	26	26	31	1.96
44193--44265	5	15.6	5	74	16	59	76	4	0	19	0.94
44983--45080	34	2.8	36	87	9	139	29	14	11	44	1.79
50345--50429	29	2.9	30	87	3	127	27	20	8	44	1.79
64312--64362	22	2.3	22	83	6	59	41	3	1	52	1.31
64343--64392	17	3.2	16	76	21	52	54	0	0	46	1.00
70505--70535	16	1.9	16	100	0	62	32	0	41	25	1.56
70588--70633	2	23.0	2	95	0	83	50	2	0	47	1.13
72685--72719	2	17.5	2	100	0	70	51	0	0	48	1.00
78491--78575	29	2.9	30	87	3	127	27	20	8	44	1.79
85857--85906	17	3.2	16	76	21	52	54	0	0	46	1.00
93005--93049	23	2.0	23	90	0	72	24	26	26	22	2.00
93017--93331	149	2.1	149	96	1	578	34	20	16	27	1.95
94839--94883	21	2.1	21	87	0	63	15	24	28	31	1.96
100791--100829	2	19.5	2	100	0	78	51	0	0	48	1.00
103579--103609	2	15.5	2	100	0	62	48	0	0	51	1.00
104963--105137	60	2.9	60	78	6	194	36	5	25	32	1.80
118490--118528	20	1.9	21	84	5	53	17	20	7	53	1.68
121230--121701	180	2.6	182	87	1	671	43	14	16	26	1.85
121622--121668	20	2.4	19	82	10	67	53	10	17	19	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121631--121673	20	2.3	19	88	11	63	51	11	16	20	1.75
123889--123953	21	3.1	21	93	0	103	41	10	30	16	1.83
123987--124052	33	2.0	33	90	0	105	28	0	48	22	1.51
125846--125894	19	2.6	19	96	0	89	32	2	10	55	1.45
126013--126989	200	4.9	200	95	1	1737	36	14	17	30	1.90
128453--128510	6	9.7	6	84	0	62	39	5	32	22	1.76
128470--128511	3	14.0	3	84	0	57	38	2	33	26	1.69
128453--128510	18	3.2	18	87	0	71	39	5	32	22	1.76
128453--128510	12	4.8	12	84	0	71	39	5	32	22	1.76
129725--131025	183	7.1	183	95	1	2281	35	14	16	32	1.89
129725--131025	548	2.4	549	94	1	2299	35	14	16	32	1.89
133849--133923	23	3.3	23	92	0	123	36	5	21	37	1.76
134142--134209	23	3.0	23	93	0	118	33	5	22	38	1.78
134550--134593	22	2.0	21	86	4	61	43	9	9	38	1.68
134611--134682	23	3.2	23	86	2	92	36	5	19	38	1.75
134886--134953	22	3.1	22	66	17	61	42	2	5	48	1.42
134869--134970	44	2.3	43	85	9	136	41	1	5	50	1.37
134882--134970	44	2.0	44	91	8	146	42	2	6	48	1.42
135137--135207	23	3.2	23	88	4	101	35	5	22	36	1.78
134926--136073	473	2.4	476	92	5	1929	41	8	10	39	1.70
135610--135678	21	3.2	22	87	10	97	33	4	23	39	1.74
137197--137225	14	2.0	15	93	6	51	24	0	0	75	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
138694--138778	30	2.8	30	94	0	143	49	7	14	29	1.69
138694--138809	30	3.8	30	89	3	135	49	6	12	31	1.68
151377--151422	2	23.0	2	100	0	92	50	0	0	50	1.00
153208--153249	19	2.2	19	100	0	84	42	4	19	33	1.72
157121--157154	16	2.2	15	89	5	50	23	2	38	35	1.70
163556--163703	72	2.1	72	97	0	278	33	26	14	26	1.94
170444--170494	26	2.0	26	100	0	102	39	19	19	21	1.93

Tables:   1

The End!