genome.fa.s2488.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002488.1 Hibiscus syriacus cultivar Beakdansim tig00005074_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92502

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10688--10925	100	2.3	102	89	2	354	41	22	8	27	1.83
10912--10938	13	2.1	13	100	0	54	48	14	0	37	1.45
12661--12699	17	2.3	17	86	0	60	35	0	0	64	0.94
13172--13204	13	2.4	14	85	10	50	45	0	9	45	1.35
13205--13262	27	2.1	27	93	6	98	44	3	6	44	1.47
13219--13276	27	2.1	27	83	0	71	44	5	8	41	1.57
13236--13370	34	3.8	34	77	14	146	45	4	8	42	1.54
13209--13478	60	4.2	62	73	20	227	45	3	7	43	1.49
13166--13367	72	2.8	71	82	11	234	45	2	7	43	1.48
13336--13392	25	2.4	23	80	11	69	43	3	8	43	1.52
13347--13395	25	2.0	25	91	0	80	44	6	6	42	1.54
13406--13517	38	3.0	38	87	10	160	43	0	9	46	1.36
22347--22502	31	5.0	31	95	1	251	38	23	17	19	1.93
24259--24457	31	6.5	31	97	1	366	38	21	20	19	1.93
24259--24457	61	3.2	62	95	2	366	38	21	20	19	1.93
25589--25624	13	2.6	15	79	20	51	61	0	36	2	1.11
28727--28972	31	8.0	31	96	2	444	38	22	19	19	1.93
28727--28973	123	2.0	123	96	3	453	38	23	19	19	1.93
30107--30142	13	2.6	15	79	20	51	61	0	36	2	1.11
30711--30742	3	10.7	3	93	0	55	65	0	31	3	1.08
31110--31141	10	3.2	10	100	0	64	37	21	9	31	1.85
36762--36795	3	11.3	3	100	0	68	0	0	32	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36939--36972	13	2.4	15	90	9	54	50	0	0	50	1.00
40523--40571	25	1.9	26	87	4	73	51	0	12	36	1.40
40522--40578	26	2.2	24	82	11	69	49	0	14	36	1.43
47606--47705	50	2.0	50	100	0	200	20	20	10	50	1.76
48581--48669	37	2.4	37	84	3	108	42	11	7	38	1.70
49069--49127	17	3.4	17	79	4	55	40	0	1	57	1.09
49176--49211	2	18.5	2	94	5	65	47	0	0	52	1.00
49173--49217	8	5.9	7	92	7	54	44	0	0	55	0.99
49238--49262	13	1.9	13	100	0	50	24	8	0	68	1.16
49407--49479	18	4.4	17	70	24	57	24	2	0	72	0.98
49385--49479	47	2.0	49	83	8	124	27	4	0	68	1.08
49555--49602	18	2.8	16	79	17	51	18	8	0	72	1.08
50763--50799	18	2.1	19	90	10	60	8	21	0	70	1.13
54221--54273	23	2.5	19	80	19	61	84	7	7	0	0.76
54222--54273	12	4.2	12	80	4	59	86	5	7	0	0.70
54228--54270	9	4.7	9	85	2	59	86	4	9	0	0.71
54221--54274	22	2.5	22	80	14	67	83	7	9	0	0.82
54221--54272	21	2.4	22	87	9	72	84	7	7	0	0.77
54877--54931	22	2.5	22	100	0	110	36	27	12	23	1.91
55893--57050	106	11.0	106	91	2	1813	33	25	18	22	1.96
56397--56552	43	3.4	43	69	16	134	33	25	19	20	1.96
55893--57004	518	2.1	521	92	2	1861	33	25	18	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58302--58343	2	21.0	2	90	0	66	50	0	2	47	1.14
58440--58480	17	2.4	18	76	8	50	17	7	4	70	1.28
58634--58693	18	3.2	18	74	6	57	23	1	0	75	0.90
58644--58693	8	5.9	9	81	6	52	22	2	0	76	0.89
58782--58828	19	2.5	19	83	12	62	17	8	0	74	1.05
65153--65195	22	1.9	22	85	4	59	37	18	4	39	1.72
83838--83892	23	2.4	23	100	0	110	16	18	3	61	1.48
84395--84474	39	2.1	39	81	9	94	55	1	5	38	1.30
85635--85991	82	4.3	83	83	1	344	29	19	19	31	1.96
85716--85843	41	3.1	41	67	14	111	32	21	16	30	1.95
85708--85834	40	3.2	40	67	14	98	29	18	17	34	1.94
85846--85967	41	3.0	41	67	13	115	29	19	21	29	1.98

Tables:   1

The End!