genome.fa.s249.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000249.1 Hibiscus syriacus cultivar Beakdansim tig00000445_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  197387

Tables:   1   

This is table  1  of  1  ( 101 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5045--5202	76	2.1	76	90	0	244	34	5	14	46	1.67
5793--5841	23	2.1	23	84	0	62	51	2	2	44	1.24
7956--8115	64	2.5	62	81	8	171	31	18	25	24	1.98
8089--8137	21	2.5	19	87	12	80	22	18	34	24	1.96
8095--8141	21	2.2	21	96	0	85	21	19	36	23	1.95
8126--8203	20	3.7	20	93	6	120	30	20	23	25	1.98
8929--8956	2	14.0	2	100	0	56	50	0	0	50	1.00
9704--9771	23	3.0	23	84	4	84	17	26	26	29	1.98
15349--15411	24	2.6	24	89	0	81	14	12	22	50	1.76
19274--19346	10	7.5	10	69	22	57	9	10	20	58	1.59
19278--19342	16	4.1	16	95	0	121	7	12	23	56	1.61
19709--19781	10	7.5	10	69	22	57	58	20	10	9	1.59
19713--19777	16	4.1	16	95	0	121	56	23	12	7	1.61
23649--23711	24	2.6	24	89	0	99	53	20	11	14	1.70
23649--23720	24	3.0	24	82	8	76	52	22	9	15	1.71
34451--34484	16	2.1	16	89	10	52	35	0	0	64	0.94
34681--34716	16	2.2	17	90	5	56	50	2	0	47	1.15
34973--35019	24	2.0	24	91	0	76	19	14	34	31	1.92
35970--36012	17	2.7	15	83	13	59	32	2	4	60	1.30
35974--36010	17	2.2	17	95	0	65	35	2	5	56	1.36
36625--36973	37	9.5	36	81	12	361	43	3	6	46	1.46
36734--36898	81	2.0	79	89	6	251	45	2	5	46	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36851--36973	35	3.5	36	84	6	112	44	2	6	46	1.42
37490--37551	21	3.1	21	60	17	51	58	24	11	6	1.56
38128--38177	18	2.6	19	84	12	59	22	8	0	70	1.13
42631--42756	34	3.5	34	82	16	162	50	18	4	26	1.67
42671--42795	42	3.0	42	92	0	214	50	19	4	26	1.65
44305--45623	84	15.8	84	86	1	1614	34	22	18	24	1.96
44305--45623	167	7.9	168	85	3	1586	34	22	18	24	1.96
46046--46441	36	11.5	34	77	15	331	44	3	6	44	1.48
46254--46310	22	2.4	25	82	11	75	49	0	5	45	1.24
46280--46429	34	4.5	34	85	8	173	46	4	6	43	1.48
46467--46494	14	2.0	14	100	0	56	28	0	0	71	0.86
46974--47036	21	3.2	21	63	17	53	58	23	9	7	1.56
48095--48371	31	9.0	31	93	3	472	37	20	19	21	1.94
49141--49185	21	2.1	21	87	0	63	15	24	28	31	1.96
50220--50250	8	4.0	8	91	8	55	12	0	0	87	0.55
50220--50250	15	2.0	16	93	6	55	12	0	0	87	0.55
50275--50331	3	18.3	3	90	3	87	33	1	0	64	1.04
50269--50328	29	2.1	29	93	0	102	33	3	0	63	1.11
50386--50428	7	5.9	7	80	20	52	11	0	4	83	0.78
50377--50509	4	33.0	4	71	13	69	18	3	4	73	1.13
55568--55617	23	2.2	23	85	0	64	40	10	8	42	1.68
62977--63009	6	5.5	6	100	0	66	18	0	48	33	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67950--67981	16	2.0	16	100	0	64	25	6	37	31	1.81
69959--69992	17	2.0	17	100	0	68	41	11	0	47	1.40
72552--72602	22	2.3	22	93	0	84	27	19	37	15	1.92
72619--72664	24	1.9	24	100	0	92	8	23	43	23	1.82
72620--72670	24	2.2	24	92	3	86	11	23	41	23	1.87
72839--72899	30	2.0	30	100	0	122	31	9	39	19	1.84
73109--73467	172	2.1	173	90	1	569	39	5	18	37	1.72
73922--73956	18	1.9	18	100	0	70	28	28	17	25	1.97
74717--74767	19	2.6	20	90	3	77	43	23	17	15	1.88
74717--74994	20	13.6	20	78	9	152	39	20	23	16	1.92
74821--74992	63	2.8	63	88	2	242	36	19	26	17	1.94
74842--74992	40	3.7	40	84	5	194	36	19	27	17	1.94
75082--75158	6	13.5	6	98	1	126	29	53	16	0	1.44
75848--75891	6	7.5	6	97	2	81	0	15	52	31	1.44
75969--76012	20	2.2	20	91	0	70	11	18	15	54	1.70
76001--76078	20	3.9	20	87	0	93	17	24	19	38	1.93
76001--76068	20	3.4	20	91	0	100	16	25	20	38	1.92
77788--77890	33	3.1	32	82	8	100	34	0	3	61	1.15
77805--77887	18	4.9	17	71	16	57	38	0	2	59	1.11
79616--79663	21	2.3	21	85	0	60	25	39	12	22	1.89
79671--79760	21	4.3	22	88	5	116	20	32	26	21	1.97
80283--80372	33	2.7	34	84	3	119	55	4	3	36	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83171--83208	13	3.0	13	88	3	60	44	0	0	55	0.99
84626--85440	182	4.5	182	86	0	1105	28	15	12	43	1.83
84626--85440	364	2.2	362	91	0	1288	28	15	12	43	1.83
85912--85950	2	19.5	2	100	0	78	51	0	0	48	1.00
86423--86525	52	2.0	52	98	0	197	41	13	23	21	1.88
91013--91115	52	2.0	52	98	0	197	41	13	23	21	1.88
111795--111834	21	1.9	22	90	10	66	12	10	40	37	1.77
111860--111904	21	2.1	21	95	0	81	28	26	20	24	1.99
111940--111982	21	2.0	21	100	0	86	13	27	44	13	1.83
112016--112080	22	3.0	22	88	2	96	12	26	38	23	1.90
112016--112080	21	3.0	21	86	4	94	12	26	38	23	1.90
112170--112229	29	2.0	31	90	6	97	45	16	6	31	1.74
121821--121854	16	2.1	16	88	0	50	20	2	0	76	0.92
129537--129593	29	1.9	30	85	3	80	43	7	10	38	1.66
131235--131585	178	2.0	178	97	0	666	26	11	22	40	1.87
131459--131750	122	2.5	116	81	6	329	25	11	20	42	1.86
131868--131902	17	2.1	17	88	0	52	51	8	14	25	1.70
133190--133235	20	2.3	20	85	3	67	15	30	21	32	1.94
133504--133549	20	2.3	20	85	7	58	52	4	4	39	1.41
134204--134267	21	3.1	21	65	4	58	20	17	25	37	1.93
134277--134407	19	6.5	19	74	10	91	19	16	21	41	1.90
134238--134367	60	2.1	61	83	7	156	18	16	21	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134296--134407	43	2.7	41	86	5	170	20	16	21	41	1.91
134315--134389	22	3.5	22	77	3	89	20	14	24	41	1.89
134500--134564	6	11.5	6	98	1	102	29	53	16	0	1.43
134565--134601	5	7.4	5	100	0	74	37	21	40	0	1.54
135564--135678	41	2.8	40	84	10	151	39	23	19	18	1.92
135564--135636	21	3.5	21	74	10	87	38	23	17	20	1.93
135564--135657	21	4.6	20	70	15	66	38	24	17	20	1.93
135650--135705	20	2.8	20	94	0	103	44	21	23	10	1.83
136284--136321	16	2.4	16	95	0	67	10	5	28	55	1.56
156798--157490	174	4.0	172	88	3	1011	30	19	25	24	1.98
156798--157490	342	2.0	344	88	3	1027	30	19	25	24	1.98
189736--189810	29	2.7	27	74	10	69	44	16	16	24	1.86
189850--189947	49	2.0	49	100	0	196	32	10	14	42	1.79

Tables:   1

The End!