Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002490.1 Hibiscus syriacus cultivar Beakdansim tig00005078_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  136957

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2625--2855
20
11.6
20
90
0
291
21
17
25
35
1.95
2625--2893
40
6.7
40
90
0
288
20
17
24
37
1.94
2625--2893
60
4.5
60
83
3
283
20
17
24
37
1.94
10645--10697
15
3.5
15
89
2
79
9
66
16
7
1.43
10645--10699
16
3.6
15
85
11
76
10
63
18
7
1.49
14117--14156
2
20.0
2
100
0
80
50
0
0
50
1.00
14365--14552
84
2.2
84
88
0
268
21
20
27
30
1.98
14540--14667
33
3.9
33
87
5
179
30
10
20
39
1.85
14540--14663
67
1.9
65
88
6
187
29
9
20
40
1.84
14716--14822
36
3.0
36
92
0
178
41
14
21
23
1.89
15246--16816
105
14.9
105
93
1
2478
23
18
24
33
1.97
21432--21461
2
15.0
2
100
0
60
50
0
0
50
1.00
29777--29859
36
2.3
36
83
10
107
46
16
4
31
1.68
41702--41730
2
14.5
2
100
0
58
48
0
0
51
1.00
49789--49857
29
2.4
29
88
9
97
49
5
0
44
1.26
49801--49859
27
2.2
26
82
11
75
47
5
0
47
1.24
54856--54901
21
2.2
21
84
0
56
39
19
30
10
1.86
54867--54910
21
2.1
21
86
0
61
38
20
29
11
1.87
58793--58917
50
2.5
51
82
11
152
24
28
28
18
1.98
59868--59900
6
5.5
6
96
0
57
48
3
48
0
1.17
62042--62247
103
2.0
104
93
1
353
31
16
12
39
1.86
73821--73855
13
2.8
13
91
4
54
57
0
0
42
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
76849--76889
8
5.2
8
82
5
57
34
0
29
36
1.58
76957--77561
126
4.8
126
98
0
1165
21
25
20
32
1.98
77946--78045
33
3.0
34
83
2
139
39
3
4
54
1.35
78555--78648
21
4.5
21
92
5
129
20
26
35
18
1.95
78652--78699
21
2.3
21
85
0
60
22
12
39
25
1.89
80419--80495
32
2.2
34
84
11
95
61
1
0
37
1.05
80449--80528
34
2.3
34
81
12
92
65
5
0
30
1.14
93095--93144
25
2.0
25
100
0
100
28
24
28
20
1.99
93254--93287
14
2.3
15
90
5
52
26
17
14
41
1.88
95064--95103
4
9.8
4
97
2
71
50
22
0
27
1.50
107257--107329
21
3.5
21
69
14
69
19
19
26
35
1.95
108858--108893
17
2.1
17
90
10
56
50
5
0
44
1.25
108857--108905
15
3.2
16
75
16
50
53
4
0
42
1.20
108976--109009
17
1.9
17
88
5
50
38
2
2
55
1.30
110719--110756
11
3.3
12
82
10
53
60
5
0
34
1.19
113218--113258
17
2.3
19
87
8
59
70
2
0
26
0.99
119052--119092
18
2.4
17
84
8
55
41
4
2
51
1.36
119352--119685
159
2.1
158
89
2
499
49
7
17
25
1.72
122569--123787
6
205.5
6
94
4
2158
49
17
0
32
1.46

Tables:   1

The End!