genome.fa.s2491.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002491.1 Hibiscus syriacus cultivar Beakdansim tig00005079_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62093

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4016--4042	13	2.1	13	100	0	54	40	7	29	22	1.81
4448--4504	24	2.4	24	91	2	89	17	26	26	29	1.97
4462--4518	24	2.4	24	84	0	78	24	22	19	33	1.97
5252--5295	21	2.1	21	91	0	70	31	22	20	25	1.98
5317--5357	21	2.0	21	95	0	73	24	21	26	26	2.00
5759--5799	21	1.9	22	95	5	75	43	19	14	21	1.87
7059--7112	26	2.1	26	89	0	81	35	24	16	24	1.95
8242--8298	25	2.2	25	90	3	87	28	33	1	36	1.68
11735--11770	12	2.8	13	87	8	56	44	8	11	36	1.70
13628--13668	18	2.4	17	84	8	55	29	24	4	41	1.75
13636--13681	18	2.6	18	96	3	85	32	15	4	47	1.65
18133--18279	64	2.3	65	87	4	210	31	14	22	31	1.94
22422--22465	19	2.3	19	96	0	79	59	6	27	6	1.49
22664--22708	2	22.5	2	95	0	81	48	0	51	0	1.00
37166--37200	17	2.1	17	100	0	70	22	22	31	22	1.98
41442--41475	18	1.9	17	88	5	50	29	0	5	64	1.17
48076--48122	21	2.2	21	92	0	85	25	17	27	29	1.97
50636--50678	2	23.0	2	86	13	65	48	0	0	51	1.00
54124--54180	21	2.7	21	91	0	78	26	21	28	24	1.99
57567--57619	27	1.9	28	85	11	74	43	24	5	26	1.76
58734--58781	19	2.5	19	86	3	60	37	29	12	20	1.90
58876--58931	21	2.7	21	91	0	85	44	25	10	19	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58919--58986	20	3.4	20	89	4	102	25	29	19	26	1.98
59798--59851	24	2.3	23	90	6	90	22	18	20	38	1.93
60039--60071	14	2.5	13	86	13	50	48	24	21	6	1.72
60046--60072	14	1.9	14	100	0	54	44	29	18	7	1.77

Tables:   1

The End!