genome.fa.s2492.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002492.1 Hibiscus syriacus cultivar Beakdansim tig00005082_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93611

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
733--777	21	2.1	21	83	0	54	46	4	15	33	1.66
2242--2292	2	26.5	2	92	7	88	49	0	0	50	1.00
16249--16474	44	5.1	44	79	4	240	22	11	24	41	1.87
22209--22253	20	2.2	20	92	0	72	37	13	22	26	1.91
22416--22456	22	1.9	21	85	5	55	21	24	21	31	1.98
25860--25933	31	2.4	31	77	11	78	24	12	10	52	1.70
26122--26166	21	2.1	21	87	0	63	60	2	2	35	1.22
27398--27442	18	2.5	18	92	0	72	35	11	28	24	1.90
28576--28613	20	1.9	20	89	10	60	50	5	5	39	1.48
30834--31175	116	2.9	115	90	3	535	42	19	10	27	1.84
32553--32655	51	2.0	52	90	1	163	31	19	11	37	1.87
34553--34591	2	19.5	2	100	0	78	48	0	0	51	1.00
34702--34764	22	2.8	22	87	2	90	28	26	19	25	1.98
35491--35544	21	2.6	21	96	0	99	24	27	20	27	1.99
36996--37035	21	2.0	21	85	5	55	37	5	2	55	1.35
38023--38059	3	12.3	3	100	0	74	64	0	0	35	0.94
43416--43514	52	1.9	52	87	0	144	39	24	12	24	1.89
43850--43878	12	2.3	13	94	5	51	68	3	0	27	1.05
43953--43999	21	2.4	19	86	10	67	70	2	6	21	1.20
45883--46096	84	2.6	82	77	6	216	25	21	24	28	1.99
46387--46565	88	2.0	88	95	0	322	22	18	24	34	1.96
46475--47658	106	11.2	106	97	0	2082	22	18	25	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51323--51351	12	2.3	13	94	5	51	68	3	0	27	1.05
51426--51472	21	2.4	19	86	10	67	70	2	6	21	1.20
58330--58487	21	7.8	20	70	7	77	37	25	17	18	1.93
58455--58683	20	11.4	20	81	5	230	37	25	17	19	1.93
59376--59422	24	2.0	24	87	8	69	25	14	21	38	1.92
59597--59621	12	2.1	12	100	0	50	72	0	28	0	0.86
64470--64553	21	3.9	21	78	9	80	15	25	36	22	1.93
68358--68397	21	1.9	21	85	10	55	35	10	2	52	1.48
71486--71684	33	5.7	34	72	17	140	46	18	21	13	1.83
71500--71722	53	4.2	53	93	1	353	45	18	21	14	1.85
71553--71716	33	4.8	33	72	16	145	46	18	21	14	1.84
71712--71829	53	2.2	53	96	1	220	14	22	17	44	1.85
71731--71847	19	6.4	19	85	10	172	15	21	17	46	1.84
71954--71990	14	2.6	14	91	0	65	45	21	0	32	1.52
72036--72139	43	2.4	43	98	0	199	47	15	2	34	1.60
72371--72438	35	1.9	35	96	0	127	52	8	7	30	1.60
73316--73469	19	8.6	19	76	14	148	46	22	19	11	1.82
73391--73447	14	3.7	14	77	20	60	45	22	21	10	1.82
73334--73464	33	3.8	33	89	5	181	47	22	19	10	1.80
73481--73507	14	1.9	14	100	0	54	7	14	29	48	1.71
73465--73559	33	2.9	33	89	6	147	7	15	27	49	1.71
73465--73593	19	7.3	19	77	17	134	8	15	27	48	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73638--73920	93	3.1	93	97	0	523	45	18	12	23	1.83
75621--75717	20	5.2	20	72	18	100	46	17	24	11	1.81
75619--75683	21	3.1	21	82	4	96	47	15	26	10	1.78
75668--75724	14	3.7	14	75	20	60	43	22	24	8	1.81
75619--75741	33	3.5	33	90	8	165	46	18	24	10	1.81
75765--75842	41	1.9	41	97	0	147	12	25	16	44	1.83
75766--75841	21	3.7	21	83	3	109	11	25	17	46	1.82
75921--75991	33	2.2	33	94	0	124	47	16	23	11	1.79
76370--76562	20	9.6	20	80	5	192	20	17	25	36	1.94
79452--79535	30	2.7	31	85	1	116	16	28	11	42	1.84
79429--79534	31	3.5	30	81	2	131	16	27	12	43	1.84
89333--89515	58	3.1	58	79	6	145	36	20	5	38	1.76
89391--89515	58	2.1	59	89	4	191	35	22	4	37	1.75
89424--89513	29	3.1	29	67	12	85	34	24	4	36	1.76

Tables:   1

The End!