genome.fa.s2494.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002494.1 Hibiscus syriacus cultivar Beakdansim tig00005087_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90982

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
384--573	102	1.9	101	84	8	260	34	7	8	50	1.61
2058--2097	18	2.2	18	100	0	80	25	32	22	20	1.98
2588--2660	25	3.0	24	68	24	62	26	6	4	63	1.38
5839--5959	51	2.5	49	82	8	149	28	22	23	26	1.99
5971--6094	50	2.5	49	85	4	149	20	33	31	14	1.93
9076--9429	176	2.0	178	97	1	676	47	16	12	23	1.81
18521--18595	33	2.3	33	97	0	141	24	32	18	25	1.97
19312--19344	17	2.0	17	88	5	50	39	0	0	60	0.97
20717--20849	20	6.5	20	70	14	74	36	22	19	21	1.95
20780--20951	20	8.5	20	75	10	116	38	25	18	17	1.92
20798--20969	61	2.8	61	75	9	188	38	25	17	18	1.92
20841--20953	20	5.6	20	81	3	136	38	25	18	16	1.92
20841--20951	41	2.7	41	90	1	179	38	26	18	17	1.92
30317--30344	14	2.0	14	100	0	56	42	21	21	14	1.88
32943--33006	31	2.1	31	84	0	83	25	17	21	35	1.95
32965--33060	30	3.2	30	83	2	104	17	19	28	34	1.95
34079--34142	19	3.6	19	76	20	75	43	20	23	12	1.85
34154--34190	14	2.6	14	91	0	56	8	21	27	43	1.80
34413--34445	17	1.9	17	88	11	50	45	12	18	24	1.83
34278--34656	94	4.1	94	93	1	611	47	17	12	22	1.81
36337--36465	20	6.8	20	70	15	94	42	20	21	15	1.89
36328--36465	40	3.6	40	73	15	139	44	18	21	15	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36328--36486	73	2.2	73	90	0	246	44	19	20	15	1.86
36357--36471	34	3.2	34	72	15	106	42	21	20	14	1.88
36507--36554	20	2.4	20	85	0	60	16	14	20	47	1.82
36517--36557	20	2.0	20	90	0	64	14	14	14	56	1.69
37117--37290	20	8.6	20	77	8	181	20	18	24	36	1.95
37119--37290	41	4.2	41	88	1	265	20	18	24	36	1.95
37119--37290	81	2.1	82	90	1	274	20	18	24	36	1.95
37299--37351	20	2.7	20	91	5	81	13	18	24	43	1.86
37119--37351	81	2.9	81	80	6	213	19	18	24	37	1.94
37380--37454	20	3.7	20	73	8	62	20	17	25	37	1.94
40522--40555	18	1.9	18	88	5	52	64	5	17	11	1.45
64238--64313	8	9.9	8	75	13	52	55	1	0	43	1.08
64194--64256	23	2.6	24	78	19	60	52	0	0	47	1.00
64222--64344	31	4.0	31	71	18	105	49	0	0	49	1.06
64277--64322	23	2.0	23	87	8	67	54	2	0	43	1.12
64231--64320	20	4.7	18	67	23	58	53	1	0	45	1.07
64447--64498	23	2.3	23	86	0	68	51	0	1	46	1.12
64843--64899	14	3.9	15	84	9	82	35	21	0	43	1.52
64843--64899	29	2.0	29	96	0	105	35	21	0	43	1.52
65975--66245	90	3.0	90	92	1	436	31	26	22	19	1.98
72768--72818	9	5.4	9	79	6	57	78	0	1	19	0.85
72761--72829	28	2.2	33	70	29	85	72	0	2	24	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72773--72833	28	2.2	28	100	0	122	77	0	3	19	0.91
72806--72848	20	2.2	20	86	0	59	65	0	2	32	1.06
72771--72837	8	7.3	9	70	21	50	74	0	2	22	0.95
72804--72846	18	2.4	17	81	11	50	67	0	2	30	1.03
76744--76777	3	11.0	3	87	6	50	32	0	5	61	1.20
83952--84080	68	1.9	68	83	0	168	43	17	5	34	1.72
85299--85338	21	1.9	21	90	10	64	42	12	0	45	1.42
85714--85738	2	12.5	2	100	0	50	52	0	0	48	1.00

Tables:   1

The End!