genome.fa.s2495.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002495.1 Hibiscus syriacus cultivar Beakdansim tig00005088_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  143529

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--361	142	2.5	143	85	7	457	33	19	25	21	1.97
2135--2164	14	2.1	14	93	0	51	36	10	0	53	1.35
3996--4091	45	2.1	45	86	3	131	59	7	12	20	1.57
4009--4100	45	2.0	45	93	0	157	56	7	15	20	1.63
12476--12553	39	2.0	38	97	2	147	30	14	29	25	1.94
16421--16466	2	23.0	2	100	0	92	50	0	50	0	1.00
19848--19894	22	2.1	22	100	0	94	34	14	23	27	1.94
21593--21657	33	1.9	34	87	3	96	38	16	6	38	1.74
22482--22566	28	3.0	28	96	0	161	50	17	10	21	1.76
26984--27029	21	2.1	21	88	4	65	47	2	10	39	1.51
27545--27572	14	2.0	14	100	0	56	42	0	7	50	1.30
27709--27804	30	3.2	30	91	2	131	37	26	26	10	1.88
28028--28083	24	2.3	24	100	0	112	37	16	17	28	1.91
35114--35151	19	2.0	20	94	5	69	34	2	5	57	1.35
36764--36842	32	2.6	30	78	7	86	56	3	7	31	1.45
37700--37741	17	2.5	18	85	11	54	50	0	0	50	1.00
37758--37799	15	2.7	15	79	13	50	47	0	0	52	1.00
51688--51734	2	23.5	2	100	0	94	51	0	0	48	1.00
51962--51994	17	1.9	17	93	0	57	33	24	6	36	1.80
55592--55648	29	2.0	29	82	0	69	38	7	3	50	1.46
56711--56854	58	2.5	58	92	4	245	35	23	15	25	1.94
56725--56990	136	1.9	137	93	2	455	36	23	14	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56788--56932	78	1.9	78	97	0	272	35	24	16	23	1.95
56866--57048	58	3.2	58	91	0	303	33	26	14	25	1.94
56711--57068	194	1.8	194	93	0	617	35	24	15	25	1.94
57044--57088	20	2.2	20	92	0	72	42	22	20	15	1.89
57117--57168	20	2.5	21	90	3	79	26	25	21	26	1.99
57257--57381	58	2.2	58	85	0	178	25	12	23	38	1.90
57373--57417	20	2.2	20	92	0	72	17	22	20	40	1.92
57381--57424	20	2.2	20	87	0	61	22	20	11	45	1.83
61191--61239	19	2.6	18	87	9	71	32	0	2	65	1.04
61192--61254	20	3.2	20	84	8	69	28	0	3	68	1.05
61190--61254	6	10.0	7	76	14	52	29	0	3	67	1.05
61190--61273	27	3.2	26	76	6	71	30	0	4	64	1.14
74572--74733	64	2.5	65	83	5	179	24	19	21	33	1.97
76520--76544	12	2.1	12	100	0	50	8	44	0	48	1.32
79030--79191	64	2.5	65	82	5	170	25	19	20	34	1.96
81397--81432	18	1.9	19	88	5	56	30	16	27	25	1.97
82199--82240	21	2.0	21	86	9	59	19	7	26	47	1.74
82991--83061	34	2.1	34	97	0	133	36	8	9	45	1.68
91422--91466	2	22.5	2	100	0	90	48	0	0	51	1.00
92081--92116	17	2.1	18	89	5	56	41	2	0	55	1.14
93034--93083	23	2.2	23	100	0	100	28	36	12	24	1.91
97228--97304	20	3.7	20	80	17	86	25	24	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97274--97320	19	2.5	19	100	0	94	25	29	17	27	1.97
100454--100612	63	2.5	62	82	4	176	31	18	23	27	1.97
101825--102188	121	3.0	121	96	0	658	25	14	23	35	1.93
101840--102024	59	3.1	59	61	23	132	26	15	22	35	1.94
102049--102084	18	2.0	18	94	0	63	11	22	30	36	1.89
102195--102255	23	2.7	23	84	0	86	21	26	26	26	1.99
106055--106092	19	2.0	20	94	5	69	28	15	28	26	1.96
106060--106218	63	2.5	62	86	4	203	32	19	22	26	1.97
107428--107789	121	3.0	121	97	0	674	24	15	24	34	1.95
107652--107687	18	2.0	18	100	0	72	11	22	33	33	1.89
107502--107693	62	3.1	62	62	25	145	23	15	25	34	1.95
107796--107848	23	2.3	23	90	0	88	20	26	26	26	1.99
107787--107864	23	3.3	23	80	1	75	23	20	21	34	1.97
109905--110040	65	2.1	63	80	9	150	26	22	16	33	1.96
115137--115190	20	2.8	20	94	2	92	24	12	0	62	1.30
116116--116671	281	2.0	276	96	3	1035	30	14	25	29	1.95
116741--116782	22	1.9	22	85	0	57	78	2	4	14	1.01
117733--118020	152	1.9	147	95	4	515	34	18	15	31	1.92
118245--118291	19	2.5	19	100	0	94	31	17	12	38	1.87
122187--122308	56	2.2	56	89	4	183	26	22	13	37	1.91
122476--122525	23	2.0	25	85	11	68	64	2	18	16	1.39
122485--122525	9	4.8	9	79	8	50	63	0	21	14	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125032--125080	24	2.0	26	88	8	75	22	2	18	57	1.51
134124--134179	27	2.0	27	86	3	76	28	5	7	58	1.46
134747--134823	38	2.0	38	94	0	136	35	20	6	37	1.79

Tables:   1

The End!