Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002496.1 Hibiscus syriacus cultivar Beakdansim tig00005089_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70123

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2098--2131
14
2.3
15
90
5
52
61
2
2
32
1.26
6328--6356
9
3.2
9
100
0
58
48
20
10
20
1.79
8002--8046
2
22.5
2
95
0
81
48
0
0
51
1.00
17059--17093
13
2.6
14
86
4
54
40
0
2
57
1.14
17039--17093
28
2.0
27
82
10
67
40
1
5
52
1.35
19526--19574
25
2.0
25
95
0
89
24
26
8
40
1.83
22782--22886
30
3.5
30
74
10
99
15
27
20
37
1.92
27333--27389
29
1.9
30
85
3
80
47
5
5
42
1.48
28054--28090
6
6.2
6
96
0
65
29
0
70
0
0.88
28715--29298
287
2.0
287
97
0
1096
28
15
18
37
1.91
38664--38700
2
18.5
2
100
0
74
51
0
0
48
1.00
38972--39002
2
15.5
2
100
0
62
48
0
0
51
1.00
39764--39985
122
1.8
123
85
1
311
44
9
17
29
1.79
40288--40316
15
2.0
15
93
6
51
37
20
0
41
1.53
40325--40359
13
2.8
13
86
4
54
34
2
0
62
1.10
42114--42165
27
2.0
28
85
11
74
30
3
7
57
1.45
42189--42247
25
2.3
25
80
11
66
38
0
1
59
1.08
46241--46306
30
2.2
29
83
2
78
51
4
10
33
1.57
46292--46347
20
2.8
20
73
13
60
50
7
8
33
1.61
46304--46346
20
2.2
19
91
4
68
51
9
9
30
1.65
46637--46709
23
3.1
23
75
9
67
45
2
2
49
1.31
46717--46759
21
2.1
21
87
8
63
60
0
0
39
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46683--46752
29
2.5
28
82
13
90
51
1
1
45
1.18
46703--46834
28
4.8
27
69
20
89
52
3
0
43
1.22
49357--49415
10
5.7
10
76
7
55
23
5
5
66
1.32
49699--49765
23
2.7
23
73
15
62
44
0
2
52
1.16
49815--49872
21
2.8
21
76
5
64
22
6
3
67
1.30
49815--49872
10
5.6
10
76
8
53
22
6
3
67
1.30
49993--50038
23
1.9
23
82
8
56
52
2
0
45
1.13
53847--53886
21
1.9
21
100
0
80
10
30
35
25
1.88
54239--54267
15
2.0
15
93
6
51
62
6
10
20
1.50
59954--59993
21
1.9
21
100
0
80
10
30
35
25
1.88
60633--60667
15
2.3
15
100
0
70
14
22
34
28
1.93
64710--64763
26
2.2
26
83
6
67
48
3
3
44
1.38
65317--65350
13
2.6
13
85
0
50
32
5
0
61
1.20

Tables:   1

The End!