genome.fa.s2497.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002497.1 Hibiscus syriacus cultivar Beakdansim tig00005091_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101296

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
398--439	15	2.8	15	86	10	59	52	0	0	47	1.00
4047--4089	20	2.2	20	95	0	77	20	18	23	37	1.94
5564--5678	21	5.5	21	74	6	90	22	19	35	22	1.96
5564--5682	42	2.8	42	84	5	152	23	18	35	22	1.96
5827--5868	12	3.5	12	83	6	50	69	7	0	23	1.13
5965--6018	21	2.6	21	75	0	63	38	33	12	14	1.85
8190--8245	22	2.5	22	94	0	103	23	12	42	21	1.86
8422--8471	20	2.5	20	90	0	82	24	18	24	34	1.96
10842--10869	14	2.0	14	100	0	56	42	7	7	42	1.59
11411--11448	16	2.6	14	81	18	51	34	18	0	47	1.49
11415--11451	16	2.3	16	100	0	74	32	16	0	51	1.45
14859--14938	31	2.6	31	82	4	81	48	6	2	42	1.41
14880--14968	31	2.8	32	85	6	103	44	6	3	44	1.46
14893--14968	32	2.4	32	86	6	102	48	6	2	42	1.43
18874--18970	48	2.0	48	95	0	176	31	5	30	31	1.80
19086--19117	16	2.0	16	100	0	64	50	0	6	43	1.27
28654--28753	51	1.9	52	91	2	166	21	20	15	44	1.87
32519--32577	15	4.1	15	72	12	52	42	0	1	55	1.09
32531--32595	28	2.2	32	86	10	93	40	1	0	58	1.07
32562--32679	44	2.7	45	82	6	152	42	4	3	50	1.38
33035--33094	16	3.6	16	86	4	57	41	1	25	31	1.65
33642--33731	38	2.4	38	87	10	132	38	37	11	12	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33688--34119	205	2.1	206	88	6	649	38	26	11	23	1.89
34108--34195	37	2.4	37	88	0	131	37	40	9	12	1.75
33899--34418	257	2.0	253	88	6	773	37	27	10	23	1.88
37043--37089	24	1.9	25	91	4	78	42	2	0	55	1.12
41481--41581	20	5.0	20	81	11	109	35	27	17	18	1.94
41612--41677	20	3.3	20	93	4	107	36	21	19	22	1.95
45001--45069	33	2.1	34	94	2	122	14	23	17	44	1.85
45276--45364	20	4.4	20	85	0	133	39	24	19	16	1.92
45276--45364	40	2.2	40	91	0	151	39	24	19	16	1.92
45336--45431	33	2.9	34	85	3	122	43	18	21	15	1.87
45579--45615	14	2.6	14	86	0	56	48	21	0	29	1.50
46968--47079	42	2.7	42	76	5	111	22	17	39	20	1.93
47559--47645	20	4.3	20	89	0	129	37	21	19	20	1.94
47689--47758	19	3.9	19	80	17	96	7	15	28	48	1.71
47714--47740	14	1.9	14	100	0	54	7	14	29	48	1.71
47695--47758	33	1.9	33	96	0	119	7	15	28	48	1.73
47680--47829	52	2.9	51	80	5	160	12	18	23	46	1.82
47690--47845	19	8.7	19	71	19	68	11	17	23	46	1.81
47893--48272	94	4.1	94	93	1	629	46	18	13	21	1.82
49492--49534	11	4.0	11	78	6	52	48	4	0	46	1.22
50234--50287	2	27.0	2	100	0	108	50	0	0	50	1.00
61252--61282	16	1.9	16	100	0	62	38	19	3	38	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61514--61574	30	2.0	30	100	0	122	34	29	9	26	1.88
67594--67695	30	3.4	30	93	0	168	31	23	19	25	1.98
67594--67712	60	2.0	60	85	3	159	32	23	20	23	1.98
68633--68690	20	2.6	22	89	10	84	25	22	20	31	1.98
72168--72240	30	2.4	30	95	0	128	30	24	20	24	1.99
72226--72290	31	2.1	31	85	0	85	35	23	18	23	1.96
73184--73241	20	2.6	22	89	10	84	25	22	20	31	1.98
73229--73390	64	2.5	63	78	9	168	28	22	16	32	1.95
81176--81206	15	2.1	15	94	5	55	45	0	0	54	0.99
82016--82060	21	2.1	21	84	8	56	60	0	8	31	1.28
86149--86185	14	2.6	14	100	0	74	59	18	0	21	1.38
92351--92412	2	31.0	2	100	0	124	50	0	0	50	1.00

Tables:   1

The End!