genome.fa.s2498.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002498.1 Hibiscus syriacus cultivar Beakdansim tig00005092_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91358

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1650--1693	15	2.9	15	89	3	61	36	9	38	15	1.80
6219--6282	26	2.4	27	82	7	78	51	15	0	32	1.44
17165--17338	20	8.7	19	80	13	140	44	23	13	18	1.85
17165--17338	40	4.3	40	77	10	176	44	23	13	18	1.85
17383--17431	20	2.5	20	86	0	80	28	16	22	32	1.95
17462--17528	20	3.3	20	97	0	125	26	14	26	31	1.95
17362--17508	77	1.9	77	90	0	231	28	14	21	35	1.93
17386--17585	97	2.1	97	93	0	337	27	14	22	36	1.93
17500--17699	57	3.5	57	86	0	301	26	15	21	37	1.93
17664--17709	20	2.3	20	84	0	56	30	8	21	39	1.84
17679--17719	20	2.0	20	95	0	73	29	14	21	34	1.93
17789--17868	36	2.2	37	95	2	144	37	25	16	21	1.93
17933--18207	40	6.8	40	78	7	274	21	14	22	41	1.90
17933--18105	81	2.1	81	87	5	244	21	13	23	41	1.89
17933--18115	101	1.8	101	88	4	280	20	14	22	42	1.88
17933--18212	20	13.9	20	78	10	245	21	15	22	41	1.90
17933--18209	60	4.6	60	77	12	300	21	15	22	41	1.90
18218--18259	20	2.1	20	90	0	66	23	16	23	35	1.95
18012--18303	120	2.4	120	80	5	313	22	14	23	40	1.90
18073--18264	100	1.9	100	83	6	237	21	14	21	41	1.89
18225--18300	20	3.8	21	79	6	68	23	14	30	31	1.94
19473--19541	25	2.8	25	91	4	113	59	0	18	21	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20247--20285	21	1.9	20	94	5	69	48	15	5	30	1.66
30019--30065	16	2.9	16	79	17	53	46	2	0	51	1.13
32075--32176	34	2.8	37	89	10	167	43	14	14	27	1.85
32072--32202	37	3.6	37	83	10	171	41	15	12	29	1.84
36193--36247	20	2.8	20	74	17	60	76	5	16	1	1.06
36858--36908	22	2.3	22	93	0	84	37	25	11	25	1.90
37763--37867	36	2.9	36	88	2	156	24	23	12	39	1.89
37763--37872	37	3.0	37	87	2	159	26	23	11	38	1.89
38040--38113	37	2.0	37	83	0	94	28	21	10	39	1.87
38672--39649	105	9.3	105	92	2	1525	33	26	17	22	1.96
40180--40315	36	3.8	36	82	13	133	42	14	12	30	1.83
44274--44307	13	2.4	14	85	14	52	0	20	0	79	0.73
44870--44968	3	32.7	3	83	6	128	60	0	4	35	1.16
45218--45869	225	2.9	225	92	1	1049	28	19	14	37	1.91
45218--45873	113	5.8	113	96	1	1059	28	19	14	37	1.91
46492--46917	82	5.2	82	92	2	694	36	20	13	29	1.91
46492--46917	165	2.6	165	92	2	705	36	20	13	29	1.91
48039--48112	7	10.9	7	68	21	50	2	16	0	81	0.81
48044--48110	21	3.2	21	77	8	82	2	14	0	82	0.79
48042--48115	9	8.4	9	72	19	50	2	17	0	79	0.84
48041--48115	20	3.7	21	75	16	77	2	17	0	80	0.84
57423--57459	15	2.7	15	88	12	53	62	8	5	24	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59631--59734	3	34.7	3	88	0	154	61	0	3	34	1.14
61280--61765	229	2.1	227	96	0	900	44	8	7	40	1.61
62030--62090	20	3.1	19	84	13	79	55	11	14	18	1.68
62224--62270	20	2.4	19	82	10	67	53	10	17	19	1.72
61832--62303	180	2.6	182	89	1	707	42	14	17	26	1.87
62233--62275	20	2.3	19	88	11	63	51	11	16	20	1.75
62985--63043	25	2.4	25	88	0	82	33	8	15	42	1.77
63396--63459	23	2.8	23	87	0	92	35	6	21	35	1.79
63396--63468	23	3.2	23	82	7	85	34	5	21	38	1.77
63614--63680	30	2.2	29	82	10	73	52	4	0	43	1.21
63826--63898	23	3.2	23	84	0	92	35	4	20	39	1.72
63193--64248	430	2.5	430	97	0	1988	42	7	11	38	1.70
64044--64110	30	2.2	29	82	10	73	52	4	0	43	1.21
68181--68239	29	2.0	29	100	0	118	49	13	13	23	1.78
72858--72916	29	2.0	29	100	0	118	49	13	13	23	1.78
76391--76430	20	2.0	20	85	0	53	45	10	25	20	1.81
78379--78425	21	2.3	21	81	3	60	27	21	17	34	1.95
88151--88192	20	2.1	20	86	0	57	35	23	9	30	1.87
88885--88927	21	2.0	21	100	0	86	46	18	11	23	1.82

Tables:   1

The End!