Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002499.1 Hibiscus syriacus cultivar Beakdansim tig00005094_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78292

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1688--1768
40
2.1
39
83
6
101
25
7
7
59
1.51
7938--8128
14
13.3
14
67
17
72
74
1
8
15
1.14
7938--8127
23
8.4
22
68
17
68
74
1
8
15
1.14
8046--8153
20
5.3
20
70
20
73
76
2
8
12
1.10
8057--8088
16
1.9
17
93
6
57
75
0
9
15
1.05
7987--8128
57
2.4
59
80
8
155
74
2
7
15
1.14
8095--8128
15
2.3
15
100
0
68
82
0
5
11
0.83
7938--8154
9
23.0
9
63
11
51
74
1
9
14
1.14
8073--8155
41
2.0
42
88
2
123
77
2
7
13
1.08
8249--8321
2
37.5
2
86
10
98
54
0
1
43
1.08
8350--8391
16
2.6
17
88
11
70
73
0
4
21
1.01
12069--12159
31
2.9
32
83
6
114
24
19
21
34
1.97
12830--12980
58
2.6
59
83
10
193
25
17
17
39
1.92
12830--12980
60
2.6
55
84
9
185
25
17
17
39
1.92
13792--13839
7
6.7
7
79
11
53
2
14
2
81
0.88
13882--13914
16
2.1
16
94
0
57
0
12
3
84
0.72
20035--20075
11
3.8
10
87
12
55
14
12
0
73
1.11
24586--24630
11
4.1
11
85
5
56
15
11
2
71
1.24
26312--26359
13
3.7
13
79
17
55
75
0
8
16
1.04
26313--26365
22
2.4
22
79
14
56
77
0
7
15
0.98
26330--26386
28
2.0
28
86
0
78
78
1
10
8
1.02
26477--26583
2
54.5
2
90
7
130
52
4
0
42
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29202--29259
23
2.6
23
94
5
102
39
3
12
44
1.58
32405--33007
126
4.8
126
98
0
1147
21
26
20
32
1.98
33392--33489
33
3.0
32
76
11
108
38
3
4
54
1.35
34015--34094
21
3.8
21
91
4
117
21
23
36
18
1.95
34104--34151
21
2.3
21
85
0
60
22
12
39
25
1.89
35873--35954
31
2.6
31
80
7
94
58
2
0
39
1.11
35907--35975
33
2.1
34
83
8
88
62
5
0
31
1.19
37701--37738
2
19.0
2
88
0
58
44
0
2
52
1.14
37695--37738
8
5.2
9
80
20
51
45
0
2
52
1.13
38518--38574
25
2.3
24
80
11
62
29
8
0
61
1.26
39424--39673
30
8.3
30
95
0
446
30
24
22
23
1.99
40550--40594
21
2.1
21
87
0
63
15
24
28
31
1.96
43722--43943
89
2.5
90
93
1
383
29
24
22
23
1.99
43729--43943
119
1.8
119
93
0
376
29
23
22
23
1.99
43725--43943
30
7.3
30
95
1
377
29
24
22
23
1.99
44816--44860
21
2.1
21
87
0
63
15
24
28
31
1.96
49433--49478
14
3.1
15
84
6
58
80
0
17
2
0.81
51838--51929
40
2.3
40
86
1
121
40
14
20
25
1.90
51907--52075
74
2.3
75
80
3
189
35
11
20
32
1.89
53420--53496
22
3.5
22
92
0
127
35
14
11
38
1.82
54217--54495
36
7.7
35
71
8
191
30
16
12
39
1.86
54217--54513
73
4.1
73
90
2
445
31
16
12
38
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54530--54981
123
3.7
123
93
1
753
41
17
17
23
1.89
54899--55257
140
2.6
140
81
8
412
39
13
18
27
1.89
70192--70220
14
2.1
14
100
0
58
51
13
0
34
1.42
72811--72888
35
2.2
34
80
10
86
42
17
0
39
1.50
72883--72957
35
2.1
35
87
0
105
30
0
24
45
1.53
75456--75497
18
2.3
18
84
12
59
54
0
0
45
0.99
77715--77834
3
39.7
3
85
11
165
34
0
0
65
0.93

Tables:   1

The End!