genome.fa.s2500.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002500.1 Hibiscus syriacus cultivar Beakdansim tig00005095_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72784

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67--128	31	2.0	31	100	0	124	38	16	9	35	1.81
3559--3608	23	2.1	24	81	3	57	76	2	4	18	1.04
4959--5037	5	15.2	5	76	15	63	73	1	3	21	1.06
4959--5023	25	2.5	25	87	9	87	73	1	3	21	1.05
5027--5104	37	2.0	40	83	16	101	50	6	1	42	1.36
5130--5403	36	7.7	34	75	14	177	43	7	4	44	1.53
5131--5336	71	3.0	67	80	13	190	43	6	4	45	1.50
5132--5388	75	3.6	70	79	13	190	43	7	4	45	1.50
9298--9335	19	1.9	19	85	15	51	15	18	21	44	1.86
11119--11143	13	1.9	13	100	0	50	40	16	20	24	1.91
14915--14986	36	2.0	36	97	0	135	25	12	13	48	1.78
27907--28013	31	3.4	31	75	13	103	13	22	28	36	1.91
30664--30735	29	2.5	29	88	2	101	48	13	16	20	1.80
31919--31989	31	2.3	31	85	0	88	12	22	32	32	1.92
31935--31999	31	2.1	31	91	0	103	10	27	33	27	1.90
41003--41754	182	4.4	164	83	10	820	40	14	16	28	1.88
41223--41818	182	3.3	182	89	1	901	40	13	17	28	1.87
44224--44264	21	2.0	21	85	0	55	41	14	26	17	1.88
44301--44395	33	2.9	33	93	0	154	28	0	45	26	1.54
44581--44619	18	2.2	18	100	0	78	56	0	38	5	1.22
46169--46213	19	2.4	19	92	0	72	33	2	8	55	1.43
46479--48038	199	7.8	198	83	3	1876	37	13	16	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46479--48038	402	3.9	398	85	3	1960	37	13	16	32	1.88
46479--48038	601	2.6	602	89	1	2292	37	13	16	32	1.88
50818--50870	24	2.2	24	86	0	70	32	5	15	47	1.68
51181--52346	200	5.8	198	84	3	1322	38	13	14	32	1.86
53957--54005	19	2.6	19	83	0	71	34	4	8	53	1.50
56482--56818	177	1.9	178	85	1	462	40	13	12	33	1.82
56653--57136	200	2.4	198	84	3	632	39	13	15	32	1.86
57222--57266	23	2.0	23	95	0	81	37	20	8	33	1.83
60522--60625	3	34.7	3	98	0	181	64	0	35	0	0.94

Tables:   1

The End!