genome.fa.s2501.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002501.1 Hibiscus syriacus cultivar Beakdansim tig00005096_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  167908

Tables:   1   

This is table  1  of  1  ( 93 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
371--449	39	2.0	39	100	0	158	34	17	30	17	1.94
5631--5661	16	2.0	15	93	6	53	48	0	0	51	1.00
6068--6258	90	2.1	90	93	3	323	32	10	7	48	1.66
6340--6383	21	2.1	21	91	0	70	61	2	0	36	1.09
11146--11170	10	2.5	10	100	0	50	68	0	0	32	0.90
11624--11674	3	17.0	3	100	0	102	66	0	0	33	0.92
12120--12161	22	1.9	22	85	9	59	28	0	0	71	0.86
29071--29301	87	2.7	87	91	2	349	34	12	10	42	1.77
29219--29263	23	2.0	23	86	0	63	42	17	6	33	1.76
32455--32487	6	5.5	6	100	0	66	18	0	18	63	1.31
44157--44207	21	2.4	21	83	0	66	7	49	21	21	1.75
55859--56157	150	2.0	150	88	2	440	22	26	10	40	1.86
58848--58968	64	1.9	63	83	5	154	32	19	22	25	1.98
59519--59575	21	2.9	21	82	12	84	21	19	31	28	1.97
59519--59573	18	2.8	19	86	8	76	20	18	32	29	1.96
63597--63659	12	5.3	12	84	3	83	36	23	17	22	1.95
63597--63668	23	3.1	23	87	2	90	36	23	18	22	1.95
68584--68713	64	2.0	64	82	4	154	35	19	20	24	1.96
69272--69326	20	2.9	18	79	10	65	20	21	29	29	1.98
72812--72886	36	2.1	36	85	9	100	48	1	4	46	1.29
80508--80543	18	2.0	18	88	0	54	11	25	19	44	1.83
84830--84861	15	2.1	16	94	5	57	6	25	18	50	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99321--99368	22	2.1	23	85	11	64	39	8	0	52	1.32
99337--99379	15	2.8	15	82	3	50	41	6	0	51	1.29
99787--99838	23	2.2	25	86	6	72	44	1	5	48	1.38
99777--99838	25	2.4	26	73	13	65	45	1	6	46	1.38
101841--101990	78	1.9	78	85	8	207	28	36	14	21	1.93
110578--110628	22	2.3	22	86	10	68	37	15	21	25	1.93
114481--114528	20	2.5	20	93	3	80	33	8	22	35	1.84
114908--114950	22	2.0	22	90	0	68	25	20	16	37	1.93
115639--115684	22	2.1	22	91	0	74	36	19	21	21	1.95
118445--118604	85	1.9	86	92	1	268	46	8	12	32	1.71
127117--127206	20	4.4	21	71	12	62	40	18	21	20	1.92
127154--127231	41	1.9	41	89	0	120	39	20	16	23	1.92
127199--127251	20	2.7	20	90	0	70	28	26	18	26	1.98
127439--127482	22	2.0	22	95	0	79	20	45	15	18	1.85
127747--127784	20	1.9	20	88	0	58	13	15	21	50	1.78
129102--129147	18	2.6	18	89	0	74	28	43	15	13	1.83
129629--129681	20	2.7	20	90	0	88	39	26	20	13	1.89
129648--129754	14	6.2	19	70	23	74	44	24	19	11	1.83
129668--129751	32	2.6	32	92	1	141	47	23	19	9	1.78
129775--129832	14	3.9	14	79	16	71	8	17	25	48	1.75
129770--129848	32	2.4	33	95	2	142	10	18	24	46	1.80
129789--129906	20	6.4	19	77	11	95	13	20	24	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131750--131827	14	5.6	14	80	3	95	30	0	20	48	1.50
131750--131827	27	2.8	28	80	3	95	30	0	20	48	1.50
131738--131841	41	2.6	41	96	1	192	29	0	20	50	1.49
131738--131841	27	3.9	27	71	15	74	29	0	20	50	1.49
131934--131987	14	3.5	14	77	22	63	48	20	20	11	1.80
131915--131988	33	2.2	33	90	0	112	43	20	21	14	1.88
131944--131980	19	1.9	19	88	0	56	51	16	21	10	1.74
132011--132106	20	4.8	20	92	0	147	17	22	20	38	1.93
132011--132106	40	2.4	40	94	0	165	17	22	20	38	1.93
132031--132121	40	2.5	35	85	10	112	16	23	21	38	1.93
133051--133104	24	2.2	24	90	0	81	24	16	20	38	1.92
135585--135714	19	7.7	19	64	25	76	42	19	23	15	1.89
135585--135710	33	3.8	33	85	6	184	42	19	23	15	1.89
135590--135717	65	2.0	66	95	1	231	42	18	22	16	1.89
135714--135753	19	2.2	19	86	4	55	17	15	20	47	1.83
135889--135925	14	2.6	14	91	0	65	45	24	0	29	1.53
137248--137331	42	2.0	42	85	0	114	22	16	39	21	1.92
139345--139443	33	3.0	33	86	1	135	39	25	23	12	1.89
139321--139484	19	9.1	19	72	16	116	43	21	22	12	1.86
139480--139560	19	4.5	19	74	16	73	11	17	24	46	1.80
140076--140169	20	4.7	20	80	7	91	23	19	25	31	1.98
140494--140541	22	2.3	20	83	16	62	58	0	8	33	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
140494--140541	21	2.3	20	83	16	62	58	0	8	33	1.28
141234--141315	21	4.0	20	67	20	53	23	29	17	30	1.97
141890--141968	20	3.9	21	83	5	85	50	17	20	11	1.76
141953--142009	14	3.7	14	75	20	60	43	22	24	8	1.81
141945--142025	33	2.5	33	100	0	162	46	19	23	9	1.80
142051--142155	40	2.6	39	83	5	156	12	24	16	46	1.81
142051--142153	20	5.2	20	77	9	120	12	24	16	46	1.81
143848--144223	94	4.1	93	94	2	607	22	12	18	47	1.82
144365--144464	39	2.8	33	78	18	112	11	21	20	48	1.80
144398--144488	19	4.6	19	83	5	110	12	19	19	48	1.80
144391--144488	39	2.5	39	89	1	142	12	20	18	48	1.79
146362--146397	14	2.6	14	95	0	63	33	0	22	44	1.53
146504--146564	19	3.5	19	74	21	69	44	21	22	11	1.84
146504--146583	33	2.4	33	93	0	133	46	22	21	10	1.81
146589--146739	19	8.7	18	70	21	101	11	23	19	45	1.83
146595--146719	33	3.8	33	96	0	214	11	23	18	47	1.80
146614--146701	14	5.6	14	69	23	50	10	23	19	46	1.80
146693--146785	20	4.7	20	72	13	66	21	19	23	35	1.96
149502--149659	21	7.5	20	74	16	113	28	18	18	33	1.95
149583--149658	21	3.7	21	89	3	127	19	22	17	40	1.91
149576--149659	41	2.0	41	100	0	168	22	21	16	39	1.92
151040--151064	12	2.1	12	100	0	50	40	0	8	52	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151108--151143	17	2.1	17	100	0	72	27	0	16	55	1.42
151427--151460	2	17.0	2	100	0	68	50	0	0	50	1.00
158171--158206	16	2.3	16	90	4	56	61	0	8	30	1.26
158162--158205	23	1.9	23	85	0	61	63	0	9	27	1.24
165229--165259	14	2.1	15	94	5	55	41	6	0	51	1.27

Tables:   1

The End!