genome.fa.s2503.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002503.1 Hibiscus syriacus cultivar Beakdansim tig00005101_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65022

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1645--1717	33	2.2	33	82	5	83	54	1	5	38	1.32
2885--3066	78	2.3	79	81	5	199	28	19	19	32	1.96
2935--3190	82	3.2	79	81	6	259	30	19	18	31	1.96
3069--3190	41	3.0	41	67	13	115	29	19	21	29	1.98
8043--8074	2	16.0	2	93	0	55	53	0	0	46	1.00
8202--8232	16	1.9	16	93	0	53	64	0	0	35	0.94
8819--8845	14	1.9	14	100	0	54	66	18	7	7	1.40
8938--8981	23	1.9	23	86	9	63	40	2	13	43	1.57
9025--9099	10	6.7	10	69	21	51	57	18	10	13	1.64
9038--9099	24	2.6	24	84	5	81	58	19	11	11	1.62
9045--9100	14	4.3	14	72	22	50	57	19	12	10	1.64
25056--25108	27	2.0	26	88	3	79	58	13	7	20	1.59
25062--25122	27	2.3	27	82	5	70	60	13	6	19	1.54
26251--26287	18	2.1	17	95	5	65	62	0	0	37	0.96
29014--29077	27	2.4	27	91	0	110	39	1	28	31	1.66
29229--29578	158	2.2	156	82	7	402	49	6	16	27	1.70
31877--31938	18	3.2	20	78	19	62	61	0	1	37	1.06
31933--32093	63	2.5	65	91	5	263	56	1	0	42	1.07
31988--32069	25	3.2	25	79	16	89	54	1	0	43	1.07
31991--32062	24	2.8	27	80	14	82	52	1	0	45	1.09
34681--34777	18	5.3	18	67	13	54	44	3	2	50	1.29
34675--34778	55	1.9	54	84	2	136	45	2	2	49	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35100--35207	30	3.6	30	87	1	146	37	12	6	42	1.69
35123--35176	14	3.7	14	76	9	54	37	9	7	46	1.64
35115--35190	15	5.1	15	70	10	57	40	11	6	40	1.68
50832--51292	223	2.1	224	91	0	753	44	13	15	26	1.84
50832--51292	112	4.1	112	93	0	735	44	13	15	26	1.84
51165--51616	182	2.5	182	94	0	787	43	12	15	28	1.84
52238--52285	23	2.1	23	88	0	69	37	16	8	37	1.79
54339--54431	36	2.8	32	79	10	107	17	26	20	35	1.94
54367--54468	36	2.8	36	90	0	168	16	22	19	41	1.90
56879--56905	13	2.1	13	100	0	54	55	22	0	22	1.44
60473--60504	9	3.8	9	92	8	50	9	21	0	68	1.17
61293--61343	3	17.7	3	80	8	52	60	0	0	39	0.97
61647--62310	112	5.9	111	86	6	795	28	18	14	38	1.90
61647--62310	331	2.0	338	84	6	884	28	18	14	38	1.90
62713--62769	22	2.6	22	88	2	80	33	12	19	35	1.89
63125--63321	49	3.9	50	78	14	199	22	20	16	40	1.91
63125--63322	52	3.9	53	78	13	213	22	20	16	39	1.92

Tables:   1

The End!