Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002504.1 Hibiscus syriacus cultivar Beakdansim tig00005102_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94931

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4228--4291
2
32.0
2
96
0
119
48
0
1
50
1.10
10031--10100
26
2.8
26
79
18
85
71
0
5
22
1.07
10002--10133
25
5.3
25
73
18
82
71
0
4
23
1.10
10087--10128
22
1.9
22
90
9
68
76
2
0
21
0.90
10093--10143
22
2.4
22
83
9
61
76
3
0
19
0.94
11219--11259
21
1.9
21
85
5
55
70
0
2
26
0.99
11220--11292
14
5.1
15
76
14
66
68
0
1
30
0.98
11336--11693
38
9.6
38
90
5
529
43
5
5
45
1.49
11336--11695
74
4.9
72
90
6
560
43
5
5
45
1.49
11679--11717
2
19.5
2
100
0
78
48
0
0
51
1.00
13348--13439
10
9.7
9
75
11
85
16
23
31
28
1.96
13347--13455
19
5.7
20
92
3
136
17
23
31
27
1.97
13449--13504
17
3.3
17
94
0
94
17
37
25
19
1.94
13496--13532
7
5.4
7
87
6
58
16
27
29
27
1.97
20685--20738
10
5.7
9
79
12
63
16
24
29
29
1.97
20684--20754
19
3.7
19
88
1
88
19
23
28
28
1.99
20748--20805
17
3.4
17
95
0
98
17
39
24
18
1.92
20795--20824
7
4.4
7
91
8
53
16
30
30
23
1.96
20795--20820
13
2.0
13
100
0
52
15
30
30
23
1.95
22214--22248
17
2.1
17
88
0
52
28
2
5
62
1.32
22495--22520
5
5.2
5
100
0
52
19
0
0
80
0.71
22526--22879
37
9.5
35
76
14
214
44
3
7
45
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22561--22806
40
6.4
38
80
10
202
44
3
7
44
1.49
22786--22840
2
28.0
2
96
3
103
50
0
0
49
1.00
23789--23911
8
15.2
8
69
11
63
18
4
3
73
1.12
23810--23862
27
1.9
28
81
11
65
24
1
0
73
0.93
23810--23862
28
1.9
27
85
11
72
24
1
0
73
0.93
24915--25167
38
6.8
35
79
13
265
44
7
3
44
1.50
24910--25167
75
3.5
73
83
7
283
43
7
3
44
1.50
24959--25196
37
6.3
37
77
15
125
44
7
3
44
1.50
25687--25744
29
2.0
29
80
12
66
70
3
1
24
1.12
26146--26200
28
1.9
29
82
10
69
47
18
0
34
1.49
30387--30442
9
6.3
9
81
8
53
25
30
26
17
1.97
30396--30453
26
2.2
26
100
0
116
25
27
27
18
1.98
37846--37969
63
2.0
63
80
6
144
17
28
28
25
1.98
51512--51558
24
2.0
24
91
0
76
40
10
19
29
1.85
58226--58263
20
1.9
20
94
0
67
44
10
23
21
1.83
58226--58269
20
2.3
19
88
7
63
45
9
25
20
1.80
67286--67311
13
2.0
13
100
0
52
38
0
0
61
0.96
69932--69995
3
21.0
3
85
3
83
37
0
1
60
1.06
69932--70004
18
4.2
16
83
11
76
39
0
1
58
1.06
71371--71472
53
1.9
55
82
9
131
29
3
3
62
1.31
76521--76560
2
20.0
2
100
0
80
50
0
0
50
1.00
79089--79233
45
3.2
45
61
16
107
31
12
20
35
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
78973--79303
93
3.6
93
97
0
601
27
13
22
36
1.92
78973--79348
93
4.1
93
93
2
598
28
13
22
36
1.91
82591--83429
76
11.0
76
96
0
1527
21
21
21
35
1.96
83585--83661
3
25.0
3
84
5
91
37
0
1
61
1.05
83585--83661
37
2.1
37
87
0
109
37
0
1
61
1.05
83611--83670
18
3.3
18
73
24
54
38
0
1
60
1.07
85608--85640
14
2.3
15
94
5
59
30
15
0
54
1.41
85894--85969
3
25.0
3
86
2
98
60
1
0
38
1.05
93665--93717
26
2.0
26
85
0
70
28
15
15
41
1.87
94878--94907
2
15.5
2
93
6
53
50
0
0
50
1.00

Tables:   1

The End!