genome.fa.s2505.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002505.1 Hibiscus syriacus cultivar Beakdansim tig00005103_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95662

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1648--1710	16	4.0	15	78	14	65	57	0	1	41	1.08
1651--1698	22	2.2	22	78	10	55	56	0	2	41	1.11
17325--17628	149	2.0	150	97	0	574	34	11	17	36	1.86
21538--21606	20	3.5	20	100	0	138	24	30	20	24	1.99
33070--33137	31	2.2	31	94	0	118	39	26	10	23	1.87
33519--33691	95	1.8	96	94	1	312	35	21	7	35	1.82
36002--36048	18	2.5	19	89	6	78	40	4	17	38	1.69
38754--38809	3	18.3	3	81	17	62	67	1	0	30	1.01
38754--38806	18	2.8	19	86	11	74	67	1	0	30	1.01
38754--38810	21	2.7	21	86	8	71	68	1	0	29	1.00
38956--39077	40	3.0	40	70	11	113	29	17	27	25	1.97
39014--39352	133	2.5	134	87	1	475	24	18	30	25	1.98
39531--39705	66	2.8	61	77	10	174	37	15	20	26	1.92
40018--40046	15	1.9	15	100	0	58	48	6	13	31	1.69
40009--40052	15	2.9	15	80	12	54	43	4	18	34	1.70
40173--40292	65	1.9	63	84	10	163	45	13	13	27	1.80
40200--40410	117	1.8	116	84	5	291	40	13	15	30	1.86
40391--40470	28	2.9	28	83	1	81	42	10	12	35	1.76
40870--41106	100	2.3	103	85	6	331	40	10	17	31	1.83
41539--41603	4	16.2	4	76	17	64	23	0	26	50	1.49
41540--41605	28	2.4	28	89	0	96	22	0	25	51	1.48
42599--42697	42	2.4	42	76	10	103	0	16	12	71	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42612--42690	32	2.6	30	76	13	81	0	15	10	74	1.06
43300--43391	45	2.1	44	83	6	114	38	9	27	25	1.87
48514--48567	3	17.3	3	83	14	65	68	1	0	29	1.00
49513--49546	2	17.0	2	100	0	68	50	0	0	50	1.00
50197--50272	35	2.2	35	97	0	143	15	22	28	32	1.95
52730--52756	13	2.1	13	100	0	54	48	7	7	37	1.59
53125--53155	16	1.9	16	100	0	62	19	35	25	19	1.95
53360--53416	15	3.7	15	77	9	69	21	33	28	17	1.96
53360--53428	15	4.3	16	75	10	52	21	31	27	18	1.97
53360--53428	32	2.2	32	91	0	111	21	31	27	18	1.97
53454--53508	15	3.4	16	85	7	76	25	30	30	12	1.93
54090--54122	15	2.2	15	94	0	57	42	3	6	48	1.43
54378--54638	77	3.4	77	83	3	321	36	15	9	38	1.79
54421--54674	77	3.3	75	78	6	233	35	16	8	38	1.80
54696--54726	2	15.5	2	100	0	62	48	0	0	51	1.00
54820--54973	78	2.0	77	82	3	184	37	16	10	35	1.83
69195--69262	22	3.1	22	95	0	118	36	11	11	39	1.79
71048--71079	16	2.0	16	93	0	55	34	6	25	34	1.81
74590--74623	16	2.1	16	88	0	50	85	14	0	0	0.60
82585--82677	21	4.6	20	80	6	98	50	20	18	10	1.76
82585--82680	40	2.4	40	81	8	115	51	19	18	10	1.75
82716--82800	39	2.2	39	83	6	109	12	22	17	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82714--82800	20	4.5	19	86	2	111	12	21	17	48	1.80
84596--84628	17	1.9	17	88	11	50	24	15	15	45	1.84
84483--84855	94	4.1	93	91	4	562	21	11	19	46	1.82
84483--84855	186	2.0	182	89	5	563	21	11	19	46	1.82
84947--85008	20	3.2	20	79	4	81	50	16	24	9	1.75
84945--85039	19	5.2	19	72	16	76	49	18	23	8	1.75
85046--85165	19	6.6	19	76	12	135	10	22	20	45	1.82
85093--85190	39	2.5	38	80	8	99	11	21	20	46	1.81
85590--85678	42	2.1	42	82	0	115	21	37	16	24	1.94
87051--87085	14	2.6	14	90	4	54	31	0	22	45	1.53
87207--87245	14	2.8	14	84	0	51	46	25	17	10	1.80
87234--87299	19	3.4	19	81	4	87	46	22	13	16	1.82
87234--87294	20	3.1	20	85	2	88	50	21	13	14	1.76
87295--87430	19	7.7	19	71	17	114	11	23	20	44	1.84
87299--87392	33	2.9	33	95	1	163	10	24	20	44	1.83
87365--87476	19	5.7	19	75	11	82	19	18	23	38	1.93
91485--91709	75	3.1	72	83	8	258	29	1	12	56	1.45
91536--91639	19	5.5	19	67	13	54	26	0	15	56	1.45
92359--92390	7	4.4	7	96	4	55	25	0	0	75	0.81
92374--92421	22	2.2	22	82	14	55	20	6	0	72	1.05

Tables:   1

The End!