genome.fa.s2506.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002506.1 Hibiscus syriacus cultivar Beakdansim tig00005104_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98700

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4015--4067	23	2.5	22	81	9	65	15	15	18	50	1.77
4027--4083	23	2.5	23	85	0	69	12	19	14	54	1.71
24901--24940	14	2.9	14	84	0	53	17	12	10	60	1.59
25147--25173	14	1.9	14	100	0	54	7	18	22	51	1.70
28941--28981	22	1.9	21	90	5	64	73	2	0	24	0.96
32333--32369	12	3.0	12	92	4	56	16	54	18	10	1.71
33938--34006	31	2.2	31	84	5	86	33	4	8	53	1.51
34430--34516	39	2.2	39	84	8	106	31	16	5	47	1.70
34795--34838	24	1.9	22	82	17	54	43	4	0	52	1.22
34825--34867	21	2.0	21	81	4	50	46	4	0	48	1.22
34835--34896	23	2.7	23	82	9	74	43	1	0	54	1.09
42991--43021	2	15.5	2	100	0	62	51	0	0	48	1.00
43316--43391	40	1.9	40	94	0	134	31	21	25	22	1.98
48537--48570	6	5.5	6	89	3	50	2	32	32	32	1.73
57701--57788	43	2.0	43	100	0	176	35	21	9	34	1.85
57708--57798	43	2.1	43	91	4	148	38	20	8	31	1.84
59451--59527	31	2.5	30	83	6	91	27	5	15	51	1.64
60336--60392	22	2.6	23	81	8	66	38	1	1	57	1.19
61716--62163	222	2.0	222	90	3	697	29	10	18	40	1.84
62577--62627	18	2.9	18	82	2	59	27	23	7	41	1.82
65382--65436	24	2.3	24	87	0	74	18	30	27	23	1.97
67233--67289	17	3.4	17	97	0	105	29	21	19	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73552--74256	244	2.9	242	84	4	788	28	13	20	37	1.90
77922--77981	24	2.5	24	97	0	111	35	25	18	21	1.96
78740--78830	31	2.9	32	76	15	100	28	18	18	34	1.95
83637--83715	31	2.5	32	85	4	106	25	21	18	34	1.96
86019--86045	11	2.5	11	100	0	54	62	7	11	18	1.50
86034--86078	21	2.1	21	95	0	81	55	4	15	24	1.59
86197--86257	24	2.5	24	89	0	95	67	9	11	11	1.43
87397--87425	6	4.8	6	100	0	58	17	0	65	17	1.27
87450--87486	9	4.2	9	86	6	58	27	0	0	72	0.84
87842--88362	244	2.1	245	88	2	764	29	13	19	37	1.90
88667--88719	12	4.5	11	77	11	52	16	18	0	64	1.30
88679--88730	23	2.4	22	81	15	63	15	17	0	67	1.24
90464--90532	30	2.3	30	89	0	111	57	10	5	26	1.53
91156--91183	2	14.0	2	100	0	56	50	0	0	50	1.00
91293--91506	51	4.0	57	77	15	197	25	12	14	48	1.77
91352--91517	51	3.3	50	82	5	219	24	12	15	47	1.79
91272--91515	102	2.3	105	80	7	275	26	13	14	46	1.81
94212--94263	2	26.5	2	81	11	63	44	1	0	53	1.11
94229--94272	23	1.9	23	81	9	54	40	2	4	52	1.34
95280--95313	17	2.0	17	100	0	68	35	35	0	29	1.58

Tables:   1

The End!