genome.fa.s2507.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002507.1 Hibiscus syriacus cultivar Beakdansim tig00005106_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  191875

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5441--5488	21	2.3	21	85	0	60	27	39	12	20	1.89
5492--5564	21	3.5	21	85	7	94	17	32	26	23	1.97
6039--6122	30	2.8	30	81	5	89	52	3	3	40	1.36
8253--8323	2	36.5	2	94	5	128	47	0	0	52	1.00
9278--9335	10	6.6	9	71	25	52	53	1	1	43	1.21
15981--16005	11	2.3	11	100	0	50	40	0	0	60	0.97
17967--18210	101	2.4	101	86	2	330	23	18	27	29	1.98
18839--18933	23	4.1	23	100	0	190	30	25	22	22	1.99
25800--25890	29	3.1	29	93	0	155	16	29	35	18	1.93
26501--26544	21	2.1	21	91	0	70	29	0	15	54	1.42
26521--26583	28	2.2	30	91	5	103	31	0	11	57	1.34
26904--26934	15	2.1	14	94	5	53	54	6	0	38	1.26
26909--26955	16	3.0	16	84	9	53	59	10	0	29	1.31
26980--27061	34	2.5	34	83	13	93	48	13	0	37	1.42
27100--27232	45	3.0	45	80	14	136	48	12	0	39	1.40
27172--27260	41	2.2	40	78	8	90	46	10	1	42	1.45
27431--27476	23	2.0	23	100	0	92	8	39	4	47	1.54
27622--27677	27	2.1	27	100	0	112	25	21	25	28	1.99
27746--27802	28	2.0	28	89	0	87	17	35	21	26	1.95
27805--27844	9	4.2	9	81	12	53	12	17	32	37	1.87
27805--27843	20	2.0	20	94	0	69	12	17	30	38	1.88
32779--32805	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37960--38030	33	2.2	33	89	0	106	22	42	7	28	1.79
39475--39505	16	1.9	16	93	0	53	35	0	3	61	1.12
43778--43909	71	1.9	70	84	7	178	43	25	0	31	1.60
43778--43893	35	3.3	35	92	1	178	43	23	0	33	1.54
48831--48962	42	3.2	42	90	1	203	53	17	3	25	1.61
48874--48941	21	3.2	21	64	22	52	55	17	1	25	1.50
52606--52634	2	14.5	2	100	0	58	0	48	0	51	1.00
55873--55925	2	26.5	2	100	0	106	49	0	0	50	1.00
60422--60480	20	2.9	20	79	18	68	37	20	18	23	1.94
62018--62064	21	2.2	21	84	0	67	23	23	19	34	1.97
62109--62356	42	5.9	41	91	1	345	21	20	22	35	1.96
62124--62359	84	2.8	84	95	1	418	22	20	22	34	1.97
63622--63672	21	2.4	21	93	3	84	54	0	11	33	1.37
65223--65256	2	17.5	2	93	6	61	52	0	0	47	1.00
68477--68513	2	18.5	2	100	0	74	48	0	0	51	1.00
68925--69057	60	2.2	60	85	2	178	32	12	16	39	1.85
68950--69068	60	2.0	60	94	0	211	29	10	21	38	1.87
71761--71808	24	2.0	24	91	0	78	27	29	12	31	1.93
71849--71930	3	27.3	3	100	0	164	32	0	67	0	0.91
72047--72117	31	2.3	31	85	0	88	36	4	9	49	1.56
79184--79550	185	2.0	184	93	0	626	45	8	3	42	1.52
80315--80366	24	2.2	24	82	6	61	44	9	5	40	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84044--84088	21	2.1	21	87	0	63	31	28	24	15	1.96
84565--84593	2	14.5	2	100	0	58	51	0	0	48	1.00
85626--85655	6	5.0	6	95	0	51	53	0	0	46	1.00
87418--87455	10	3.9	10	89	3	60	55	0	0	44	0.99
87530--87626	32	3.1	32	80	8	126	29	16	17	36	1.92
87617--87710	30	3.1	30	89	3	127	21	21	26	30	1.98
97801--97860	29	2.0	30	96	3	113	28	3	23	45	1.69
103732--104141	99	4.1	99	94	1	669	41	18	27	12	1.87
109785--109900	2	58.0	2	100	0	232	50	0	0	50	1.00
110052--110111	3	20.0	3	92	0	102	31	1	0	66	1.01
110110--110160	21	2.5	20	78	9	57	56	1	1	39	1.22
111524--111563	12	3.1	13	82	10	55	40	0	0	60	0.97
122825--122921	9	10.1	9	77	20	90	85	0	14	0	0.60
122833--122921	6	14.8	6	83	14	96	85	0	14	0	0.60
122825--122914	15	6.1	15	82	8	105	86	0	13	0	0.57
122822--122914	20	4.7	20	80	11	120	86	0	13	0	0.58
122825--122913	35	2.6	34	90	3	133	86	0	13	0	0.57
122822--122914	36	2.5	35	84	13	116	86	0	13	0	0.58
122825--122914	1	90.0	1	73	0	72	86	0	13	0	0.57
124943--125541	113	5.3	113	88	4	875	36	14	19	28	1.92
125792--125869	3	26.0	3	94	0	138	32	1	0	66	1.00
125868--125918	21	2.5	20	78	9	57	56	1	1	39	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126968--127023	29	1.9	28	85	7	76	39	12	5	42	1.65
127282--127321	12	3.1	13	82	10	55	40	0	0	60	0.97
133363--133775	215	1.9	215	91	0	673	24	23	14	37	1.92
141351--141375	10	2.5	10	100	0	50	24	0	0	76	0.80
144765--144888	46	2.6	48	88	3	182	67	5	3	23	1.26
144765--144902	48	2.9	46	82	6	154	65	6	3	24	1.33
144842--144909	20	3.6	19	70	29	65	66	7	2	23	1.31
144854--144923	34	2.0	36	88	8	108	65	8	4	21	1.37
144884--144976	43	2.1	44	94	4	161	67	7	4	20	1.32
145375--145451	21	3.7	21	72	6	66	24	12	31	31	1.93
145998--146047	25	1.9	25	88	8	73	52	12	0	36	1.39
146010--146060	25	2.1	23	89	7	75	47	11	0	41	1.40
162195--162268	21	3.5	21	77	0	67	31	14	27	27	1.95
163492--163548	27	2.1	27	93	0	96	1	21	31	45	1.62
166041--166077	20	1.9	19	89	10	58	24	21	5	48	1.71
166591--166624	17	2.0	17	100	0	68	52	0	11	35	1.38
177129--177171	21	2.0	21	100	0	86	37	18	9	34	1.83
180885--180929	15	3.1	15	83	3	56	44	0	2	53	1.13
180914--180957	18	2.4	19	80	3	54	43	2	2	52	1.26
180885--180966	28	3.0	28	82	10	82	46	1	2	50	1.22
181003--181063	17	3.4	17	76	10	59	45	3	3	47	1.35
181030--181114	42	2.0	43	86	2	118	43	1	2	52	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
181050--181146	37	2.8	34	77	17	101	45	1	2	51	1.19
185952--186100	64	2.4	64	95	2	266	33	6	12	47	1.66
190042--190091	24	2.1	24	92	0	82	40	0	0	60	0.97

Tables:   1

The End!