Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002508.1 Hibiscus syriacus cultivar Beakdansim tig00005108_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68509

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14086--14297
108
2.0
108
95
0
379
24
20
17
37
1.94
20988--21123
39
3.5
38
90
6
202
30
27
19
22
1.98
24043--24100
23
2.5
23
80
5
64
50
15
22
12
1.77
26522--26574
26
2.0
26
85
0
70
35
11
15
37
1.83
30618--30679
16
3.9
16
89
0
88
17
24
14
43
1.86
30613--30683
32
2.2
32
87
0
106
18
25
15
40
1.89
30950--30999
23
2.1
24
92
3
84
46
0
6
48
1.27
31151--31253
48
2.1
50
78
5
111
33
6
9
49
1.62
31243--31279
15
2.4
15
95
4
65
40
2
5
51
1.39
31252--31305
20
2.7
20
82
8
65
40
5
5
48
1.50
32829--32895
19
3.6
18
84
10
73
16
1
32
49
1.55
32848--32891
18
2.4
18
85
11
54
13
2
36
47
1.56
33300--33463
2
85.5
2
68
18
91
46
4
1
47
1.29
33301--33613
15
19.8
15
64
18
77
44
5
3
47
1.41
33342--33520
86
2.1
86
90
4
281
44
5
2
48
1.39
33479--33518
13
2.9
13
88
7
53
40
5
7
47
1.54
33490--33546
26
2.3
26
84
6
73
42
7
5
45
1.53
33540--33593
18
3.0
18
84
10
74
46
1
5
46
1.37
44594--44664
16
4.4
16
89
0
97
18
26
15
39
1.90
44920--44969
23
2.1
24
92
3
84
46
0
6
48
1.27
45121--45223
48
2.1
50
78
5
111
33
6
9
49
1.62
45213--45249
15
2.4
15
95
4
65
40
2
5
51
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45222--45275
20
2.7
20
82
8
65
40
5
5
48
1.50
46677--46719
15
2.6
17
89
7
63
44
6
2
46
1.43
46803--46869
19
3.6
18
84
10
73
16
1
32
49
1.55
46822--46865
18
2.4
18
85
11
54
13
2
36
47
1.56
47275--47424
2
77.0
2
73
15
118
46
4
1
48
1.29
47284--47431
31
4.7
31
72
16
117
46
4
1
47
1.29
47372--47459
15
5.7
15
78
10
70
44
4
1
50
1.30
47324--47502
86
2.1
86
89
4
272
44
4
2
48
1.37
47460--47560
15
7.1
14
70
23
70
41
5
5
46
1.52
47461--47500
13
2.9
13
88
7
53
40
5
7
47
1.54
47472--47528
26
2.3
26
84
6
73
42
7
5
45
1.53
47521--47579
18
3.5
17
79
9
66
45
1
6
45
1.40
47459--47557
13
7.1
13
69
21
51
40
6
6
47
1.53
58573--58643
16
4.4
16
89
0
97
18
26
15
39
1.90
58913--58962
23
2.1
24
92
3
84
46
0
6
48
1.27
59112--59214
48
2.1
50
78
5
111
33
6
9
49
1.62
59204--59240
15
2.4
15
95
4
65
40
2
5
51
1.39
59213--59266
20
2.7
20
82
8
65
40
5
5
48
1.50
60666--60708
15
2.6
17
89
7
63
44
6
2
46
1.43
60792--60858
19
3.6
18
84
10
73
16
1
32
49
1.55
60811--60854
18
2.4
18
85
11
54
13
2
36
47
1.56
60951--60980
2
15.0
2
100
0
60
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61268--61407
2
72.0
2
71
16
98
46
5
0
47
1.29
61309--61487
86
2.1
87
87
6
256
44
5
2
48
1.37
61443--61515
13
5.3
13
79
9
74
41
6
5
46
1.54
61444--61517
28
2.6
29
81
12
82
41
6
5
45
1.53
61443--61562
13
7.7
15
73
21
65
42
5
5
46
1.49
61504--61562
18
3.3
18
81
11
77
44
1
5
49
1.34
61443--61563
15
7.8
15
73
17
63
42
4
5
47
1.49

Tables:   1

The End!