Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002510.1 Hibiscus syriacus cultivar Beakdansim tig00005110_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 113666
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Found at i:8590 original size:9 final size:9
Alignment explanation
Indices: 8576--8601 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
8566 GGTTGTTGGC
8576 AGATGTGAA
1 AGATGTGAA
8585 AGATGTGAA
1 AGATGTGAA
8594 AGATGTGA
1 AGATGTGA
8602 GATATGTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.35, T:0.23
Consensus pattern (9 bp):
AGATGTGAA
Found at i:15737 original size:24 final size:26
Alignment explanation
Indices: 15710--15770 Score: 69
Period size: 24 Copynumber: 2.5 Consensus size: 26
15700 ATATATATAT
*
15710 ATAATATTAATA-A-ATTTAATTTAA
1 ATAATATAAATATATATTTAATTTAA
15734 ATAA-A-AAATATATATTTAATTTAA
1 ATAATATAAATATATATTTAATTTAA
*
15758 AT-ATATATATATA
1 ATAATATAAATATA
15771 CCCGGCCCGA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
22 4 0.13
23 3 0.10
24 18 0.58
25 6 0.19
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (26 bp):
ATAATATAAATATATATTTAATTTAA
Found at i:15752 original size:19 final size:19
Alignment explanation
Indices: 15728--15767 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
15718 AATAAATTTA
15728 ATTTAAATAAAAAATATAT
1 ATTTAAATAAAAAATATAT
* * *
15747 ATTTAATTTAAATATATAT
1 ATTTAAATAAAAAATATAT
15766 AT
1 AT
15768 ATACCCGGCC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
ATTTAAATAAAAAATATAT
Found at i:18478 original size:60 final size:60
Alignment explanation
Indices: 18350--18497 Score: 156
Period size: 60 Copynumber: 2.5 Consensus size: 60
18340 CATTGTACGT
* * ** *
18350 CCTCAAACTATGATCCTCCTTCCAAATTGGTCCTTAAACTTTTAAAAGTTTTAAATTCAC
1 CCTCAAACTATGATCATCATTCCAAATTGGTCCTTAAACTTTTAAAAGTTCCAAAATCAC
* * * *
18410 CCTTAAACTATGATCATCATTCTAAATTGGTCCTTCAACTTTTGAACA-TTCCAAAATCATC
1 CCTCAAACTATGATCATCATTCCAAATTGGTCCTTAAACTTTT-AAAAGTTCCAAAATCA-C
* * *
18471 CC-CAAACTATGACCCTCATCCCAAATT
1 CCTCAAACTATGATCATCATTCCAAATT
18498 AATCCCCAAA
Statistics
Matches: 72, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
60 66 0.92
61 6 0.08
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.34
Consensus pattern (60 bp):
CCTCAAACTATGATCATCATTCCAAATTGGTCCTTAAACTTTTAAAAGTTCCAAAATCAC
Found at i:18684 original size:60 final size:60
Alignment explanation
Indices: 18573--18686 Score: 138
Period size: 60 Copynumber: 1.9 Consensus size: 60
18563 CATGGTTTGA
* * * *** * * *
18573 GGATGAATTTAGAATATTTAAAAGTTTGGGGACTAATTTAGGATGAGAGTCATAGTTCAT
1 GGATGAAATTAGAATACTCAAAAGTTCAAGGACTAATTTAGAATAAAAGTCATAGTTCAT
*
18633 GGATGAAATTAGAATACTCAAAAGTTCAAGGACTACTTTAGAATAAAAGTCATA
1 GGATGAAATTAGAATACTCAAAAGTTCAAGGACTAATTTAGAATAAAAGTCATA
18687 TTTTGAGGCT
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
60 44 1.00
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.31
Consensus pattern (60 bp):
GGATGAAATTAGAATACTCAAAAGTTCAAGGACTAATTTAGAATAAAAGTCATAGTTCAT
Found at i:19724 original size:28 final size:28
Alignment explanation
Indices: 19693--19746 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
19683 CCTAAATCTT
* *
19693 AAACTCCA-ATCACTAAACCCTAAACCAC
1 AAACCCCATATCA-TAAACCATAAACCAC
19721 AAACCCCATATCATAAACCATAAACC
1 AAACCCCATATCATAAACCATAAACC
19747 TAAAAGTTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
28 19 0.83
29 4 0.17
ACGTcount: A:0.48, C:0.37, G:0.00, T:0.15
Consensus pattern (28 bp):
AAACCCCATATCATAAACCATAAACCAC
Found at i:20004 original size:16 final size:17
Alignment explanation
Indices: 19983--20014 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
19973 ATTAACTTTT
19983 TTTTA-TAAAAAGAGAG
1 TTTTATTAAAAAGAGAG
19999 TTTTATTAAAAAGAGA
1 TTTTATTAAAAAGAGA
20015 AAATATTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.50, C:0.00, G:0.16, T:0.34
Consensus pattern (17 bp):
TTTTATTAAAAAGAGAG
Found at i:20645 original size:22 final size:22
Alignment explanation
Indices: 20620--20667 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
20610 TAAAAGACTA
*
20620 AAAACATGACATAAAAACATAG
1 AAAACATGACATAAAAACAGAG
* * *
20642 AAAACGTGCCATTAAAACAGAG
1 AAAACATGACATAAAAACAGAG
20664 AAAA
1 AAAA
20668 AGTATCATAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.60, C:0.15, G:0.12, T:0.12
Consensus pattern (22 bp):
AAAACATGACATAAAAACAGAG
Found at i:25712 original size:2 final size:2
Alignment explanation
Indices: 25707--25740 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
25697 TGATTTTTTA
25707 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
25741 CAACATCGCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:25934 original size:10 final size:10
Alignment explanation
Indices: 25921--25948 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
25911 TTTTTTTTAT
25921 TTTTCACAAA
1 TTTTCACAAA
25931 TTTTCACAAA
1 TTTTCACAAA
25941 TTTTCACA
1 TTTTCACA
25949 TTTTATAGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.43
Consensus pattern (10 bp):
TTTTCACAAA
Found at i:28455 original size:20 final size:20
Alignment explanation
Indices: 28411--28484 Score: 76
Period size: 21 Copynumber: 3.6 Consensus size: 20
28401 ATTTTTCCAG
***
28411 AAAGGATCGATCCCTTAGGG
1 AAAGGATCGATCCCTTACCA
* * *
28431 GAAGGATTGATCCCTTACTA
1 AAAGGATCGATCCCTTACCA
28451 AAAGGGATCGATCCCTTACCA
1 AAA-GGATCGATCCCTTACCA
28472 AAAGGGATCGATC
1 AAA-GGATCGATC
28485 TCAAACCCTC
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
20 17 0.38
21 28 0.62
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.22
Consensus pattern (20 bp):
AAAGGATCGATCCCTTACCA
Found at i:28463 original size:21 final size:21
Alignment explanation
Indices: 28434--28484 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
28424 CTTAGGGGAA
* *
28434 GGATTGATCCCTTACTAAAAG
1 GGATCGATCCCTTACCAAAAG
28455 GGATCGATCCCTTACCAAAAG
1 GGATCGATCCCTTACCAAAAG
28476 GGATCGATC
1 GGATCGATC
28485 TCAAACCCTC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.24
Consensus pattern (21 bp):
GGATCGATCCCTTACCAAAAG
Found at i:38085 original size:18 final size:19
Alignment explanation
Indices: 38006--38086 Score: 60
Period size: 19 Copynumber: 4.3 Consensus size: 19
37996 TAAATATCTT
*
38006 TATTAA-AATATTATTATAT
1 TATTAATAATATTATTA-AA
* *
38025 TATT-ATACTAATATTAAA
1 TATTAATAATATTATTAAA
* * *
38043 TACATAAATAATATTATTCAT
1 T--ATTAATAATATTATTAAA
38064 TATTAATAAT-TTATTAAA
1 TATTAATAATATTATTAAA
38082 TATTA
1 TATTA
38087 TTAAAAATAA
Statistics
Matches: 47, Mismatches: 11, Indels: 9
0.70 0.16 0.13
Matches are distributed among these distances:
18 14 0.30
19 20 0.43
20 2 0.04
21 11 0.23
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (19 bp):
TATTAATAATATTATTAAA
Found at i:38132 original size:49 final size:51
Alignment explanation
Indices: 38012--38136 Score: 127
Period size: 49 Copynumber: 2.5 Consensus size: 51
38002 TCTTTATTAA
* * * *
38012 AATA-TTATTATATTATTATACTAATATTAAATACATAAATAATATTATTC
1 AATATTTATTATATTATTAAAATATTATTAAATACATAAATAATATAATTC
* * * *
38062 ATTATTAATAAT-TTATT-AAATATTATTAAA-A-ATAAA-AATATAATTG
1 AATATTTATTATATTATTAAAATATTATTAAATACATAAATAATATAATTC
38108 AATATTTATTATATTATTAAAAATATTAT
1 AATATTTATTATATTATT-AAAATATTAT
38137 ATTATATTAT
Statistics
Matches: 60, Mismatches: 11, Indels: 9
0.75 0.14 0.11
Matches are distributed among these distances:
46 17 0.28
47 10 0.17
48 1 0.02
49 19 0.32
50 8 0.13
51 5 0.08
ACGTcount: A:0.50, C:0.02, G:0.01, T:0.46
Consensus pattern (51 bp):
AATATTTATTATATTATTAAAATATTATTAAATACATAAATAATATAATTC
Found at i:38141 original size:22 final size:21
Alignment explanation
Indices: 38108--38148 Score: 73
Period size: 22 Copynumber: 1.9 Consensus size: 21
38098 AATATAATTG
38108 AATATTTATTATATTATTAAA
1 AATATTTATTATATTATTAAA
38129 AATATTATATTATATTATTA
1 AATATT-TATTATATTATTA
38149 TATTAATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (21 bp):
AATATTTATTATATTATTAAA
Found at i:38195 original size:12 final size:11
Alignment explanation
Indices: 38180--38223 Score: 52
Period size: 12 Copynumber: 3.8 Consensus size: 11
38170 TATTTTAATA
38180 ATTAATATTTT
1 ATTAATATTTT
* *
38191 AATTAAAATGTT
1 -ATTAATATTTT
38203 ATTAACTATTTT
1 ATTAA-TATTTT
38215 ATTAATATT
1 ATTAATATT
38224 AAATTGATAA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
11 9 0.33
12 18 0.67
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (11 bp):
ATTAATATTTT
Found at i:40533 original size:27 final size:27
Alignment explanation
Indices: 40495--40551 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
40485 ATTAATTACG
40495 ATAGTAGTATATTGTTTTGTTTTAAAT
1 ATAGTAGTATATTGTTTTGTTTTAAAT
*
40522 ATAGTATTATATTGTTTTGTTTTAAAT
1 ATAGTAGTATATTGTTTTGTTTTAAAT
40549 ATA
1 ATA
40552 ATTACTTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (27 bp):
ATAGTAGTATATTGTTTTGTTTTAAAT
Found at i:41094 original size:6 final size:6
Alignment explanation
Indices: 41083--41107 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
41073 GTTGATCTGA
41083 ATGTTG ATGTTG ATGTTG ATGTTG A
1 ATGTTG ATGTTG ATGTTG ATGTTG A
41108 AAATCTTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.20, C:0.00, G:0.32, T:0.48
Consensus pattern (6 bp):
ATGTTG
Found at i:41478 original size:2 final size:2
Alignment explanation
Indices: 41471--41497 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
41461 CTACTACATC
41471 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
41498 ACTAAAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:41886 original size:10 final size:10
Alignment explanation
Indices: 41871--41911 Score: 50
Period size: 9 Copynumber: 4.3 Consensus size: 10
41861 GAAATTTATA
*
41871 CTTCTTCCTT
1 CTTCTTTCTT
41881 CTTCTTTCTT
1 CTTCTTTCTT
*
41891 C-TCTTTTTT
1 CTTCTTTCTT
41900 CTTC-TTCTT
1 CTTCTTTCTT
41909 CTT
1 CTT
41912 TTACAATTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
9 15 0.56
10 12 0.44
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (10 bp):
CTTCTTTCTT
Found at i:42924 original size:229 final size:229
Alignment explanation
Indices: 42517--43008 Score: 862
Period size: 229 Copynumber: 2.1 Consensus size: 229
42507 GTTATATTGT
* * *
42517 AAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAATATATTTATTATTA
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTA
*
42582 TCTTTGGTTAATATTATTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAA
66 TATTTGGTTAATATTATTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAA
*
42647 TAATTTTGTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACA-TACTTA
131 TAATTTTGTGTGTAAATGAAATTATTAAATTAATATTGTAGATGGAAAACATGAAACACTA-TTA
*
42711 AAAAAAATTGAAACATAAATTACATATCTTTAAAA
195 AAAAAAATTGAAACATAAATTACATAACTTTAAAA
42746 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATT
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGT-GAAAACATATTTATTATT
* *
42811 ATATTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATC-AAATAATCAA
65 ATATTTGGTTAATATTATTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAA
*
42875 ATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGATGGAAAACATGAAACACTATTA
130 ATAATTTTGTGTGTAAATGAAATTATTAAATTAATATTGTAGATGGAAAACATGAAACACTATTA
*
42940 AATAAAATTGAAACATAAATTACATAACTTTAAAA
195 AAAAAAATTGAAACATAAATTACATAACTTTAAAA
42975 AAAGTATATATCATTTTTATAAAAGTGTCCATAC
1 AAAGTATATATCATTTTTATAAAAGTGTCCATAC
43009 GTATAAAAGT
Statistics
Matches: 251, Mismatches: 10, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
229 180 0.72
230 71 0.28
ACGTcount: A:0.45, C:0.08, G:0.08, T:0.39
Consensus pattern (229 bp):
AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTA
TATTTGGTTAATATTATTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAA
TAATTTTGTGTGTAAATGAAATTATTAAATTAATATTGTAGATGGAAAACATGAAACACTATTAA
AAAAAATTGAAACATAAATTACATAACTTTAAAA
Found at i:43455 original size:181 final size:182
Alignment explanation
Indices: 43078--43551 Score: 693
Period size: 181 Copynumber: 2.6 Consensus size: 182
43068 CGATCCAAAT
* * * * *
43078 AAAAAATGTGTCGATCCAAAACGATATAACAGGTAAAACTATGACAAAACCAGTATA-GAAATGA
1 AAAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGT-TACAAAATGA
* * * * * *
43142 TAAAACCGGTAAAGCGCTACCGGATACATTTAAATTGTCGGTACTTTAATATAAGGATCAACACT
65 TAAAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCAACACT
* *
43207 TCGTGAATTTAAAAGAAAAGCAGTTTTAAATCCTATAAAGTGTCGATACTTTT
130 TCGTGAATTTAAAAGAAAAGCAGTTTTAAAGCCTATAAAGTGTCGATACTTTA
*
43260 AAAAAATGTATCGATCCAAAACGATATACCAGGTAAAAATATGATAAAACCGGTTACAAAATGAT
1 AAAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTTACAAAATGAT
* *
43325 AAAACCGGTAAAACGTTACCGGATATATTGAAAGTGTCGATACTTT-ATATAAGGATCGACACTT
66 AAAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCAACACTT
* ** *
43389 TGTGAATTTAAAAGAAAAGCAGTTTTAGCGCCTATAATGTGTCGATACTTTA
131 CGTGAATTTAAAAGAAAAGCAGTTTTAAAGCCTATAAAGTGTCGATACTTTA
* * *
43441 AAAAAATATATCGATCCACAACAATATAACAGGTAAAAATATGATAAAACCGG-TATCAAAATGA
1 AAAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTTA-CAAAATGA
*
43505 TAAAACCGGTAAAATGATACCGGATATATTGAAAGTGTCGATACTTT
65 TAAAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTT
43552 CGTAAGTACG
Statistics
Matches: 265, Mismatches: 25, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
180 2 0.01
181 167 0.63
182 96 0.36
ACGTcount: A:0.43, C:0.14, G:0.16, T:0.27
Consensus pattern (182 bp):
AAAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTTACAAAATGAT
AAAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCAACACTT
CGTGAATTTAAAAGAAAAGCAGTTTTAAAGCCTATAAAGTGTCGATACTTTA
Found at i:43520 original size:17 final size:19
Alignment explanation
Indices: 43481--43523 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
43471 AGGTAAAAAT
43481 ATGATAAAACCGGTATCAAA
1 ATGATAAAACCGG-ATCAAA
43501 ATGATAAAACCGG-T-AAA
1 ATGATAAAACCGGATCAAA
43518 ATGATA
1 ATGATA
43524 CCGGATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.39
18 1 0.04
20 13 0.57
ACGTcount: A:0.51, C:0.12, G:0.16, T:0.21
Consensus pattern (19 bp):
ATGATAAAACCGGATCAAA
Found at i:45771 original size:21 final size:21
Alignment explanation
Indices: 45745--45786 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
45735 GACAATCAAT
45745 AGTCGAAGAGAAACTTGAGAG
1 AGTCGAAGAGAAACTTGAGAG
* *
45766 AGTCGAAGATACACTTGAGAG
1 AGTCGAAGAGAAACTTGAGAG
45787 GCATAAGGGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.40, C:0.12, G:0.31, T:0.17
Consensus pattern (21 bp):
AGTCGAAGAGAAACTTGAGAG
Found at i:45884 original size:33 final size:33
Alignment explanation
Indices: 45820--45885 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
45810 AAATAGATGG
* *
45820 AGTGGTGAAAGAAGTAGAGGTATTGATGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTATTAAGGGGTGA
* * *
45853 AGTGGTGAAAGAAGTTGGGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTATTAAGGGGTGA
45886 TATTAAGATG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.30, C:0.00, G:0.45, T:0.24
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTATTAAGGGGTGA
Found at i:47701 original size:19 final size:19
Alignment explanation
Indices: 47677--47723 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
47667 AATGTAGGGT
47677 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
47696 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
47715 T--TTTTGTAT
1 TAATTTTGTAT
47724 GTGAATATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
17 8 0.30
19 19 0.70
ACGTcount: A:0.30, C:0.02, G:0.11, T:0.57
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:48656 original size:197 final size:198
Alignment explanation
Indices: 47840--48805 Score: 1767
Period size: 198 Copynumber: 4.9 Consensus size: 198
47830 CAATATGGCC
*
47840 AACAGGGTGCAACCAT-AAGTGTCGATCCATATAT-AAAAGTGTCGATCCCAAAAACATCGAAAA
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCG-AAC
47903 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGA
65 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGA
*
47968 GAATATGTCTAAATAATGTGTCGACACTATTTTAGTTTGTGTCGATATTTTTGTTCCAGAATGAA
130 GAATATGTCTAAATAATGTGTCGACACT-TTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAA
48033 TGGAA
194 TGGAA
*
48038 AACAGGATGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
* *
48103 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACAGGTACATGTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
*
48168 AATATGTCTAAATAATGTGTCGAGACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
131 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
48233 GAA
196 GAA
48236 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
*
48301 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATATCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
*
48366 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTGGTGTCGATATTTTTGGTCCAGAATGAATG
131 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
48431 GAA
196 GAA
* *
48434 AATAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
48499 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGG-TTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
*
48563 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTGGTGTCGATATTTTTGGTCCAGAATGAATG
131 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
48628 GAA
196 GAA
* *
48631 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCTAAAAACATCGAACC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
*
48696 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACTGGTACAAGTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
48761 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATA
131 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATA
48806 CTAATTTAAA
Statistics
Matches: 746, Mismatches: 19, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
197 194 0.26
198 417 0.56
199 110 0.15
200 25 0.03
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (198 bp):
AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
GAA
Found at i:48699 original size:395 final size:396
Alignment explanation
Indices: 47840--48805 Score: 1767
Period size: 395 Copynumber: 2.4 Consensus size: 396
47830 CAATATGGCC
*
47840 AACAGGGTGCAACCAT-AAGTGTCGATCCATATAT-AAAAGTGTCGATCCCAAAAACATCGAAAA
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCG-AAC
47903 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGA
65 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGA
*
47968 GAATATGTCTAAATAATGTGTCGACACTATTTTAGTTTGTGTCGATATTTTTGTTCCAGAATGAA
130 GAATATGTCTAAATAATGTGTCGACACT-TTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAA
48033 TGGAAAACAGGATGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATC
194 TGGAAAACAGGATGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATC
*
48098 GAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACAGGTACATGTATACCGGTTTTAT
259 GAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACAGGTACAAGTATACCGGTTTTAT
* *
48163 GAGAGAATATGTCTAAATAATGTGTCGAGACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAAT
324 GAGAGAATATGTCTAAATAATGTGTCGACACTTTTTAGTTGGTGTCGATATTTTTGGTCCAGAAT
48228 GAATGGAA
389 GAATGGAA
48236 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
*
48301 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATATCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
*
48366 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTGGTGTCGATATTTTTGGTCCAGAATGAATG
131 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
* * *
48431 GAAAATAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGA
196 GAAAACAGGATGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGA
*
48496 ACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGG-TTTATGA
261 ACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACAGGTACAAGTATACCGGTTTTATGA
48560 GAGAATATGTCTAAATAATGTGTCGACACTTTTTAGTTGGTGTCGATATTTTTGGTCCAGAATGA
326 GAGAATATGTCTAAATAATGTGTCGACACTTTTTAGTTGGTGTCGATATTTTTGGTCCAGAATGA
48625 ATGGAA
391 ATGGAA
* *
48631 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCTAAAAACATCGAACC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
*
48696 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACTGGTACAAGTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
48761 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATA
131 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATA
48806 CTAATTTAAA
Statistics
Matches: 552, Mismatches: 16, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
395 246 0.45
396 169 0.31
397 112 0.20
398 25 0.05
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (396 bp):
AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
GAAAACAGGATGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGA
ACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACAGGTACAAGTATACCGGTTTTATGA
GAGAATATGTCTAAATAATGTGTCGACACTTTTTAGTTGGTGTCGATATTTTTGGTCCAGAATGA
ATGGAA
Found at i:50294 original size:3 final size:3
Alignment explanation
Indices: 50286--50345 Score: 59
Period size: 3 Copynumber: 20.0 Consensus size: 3
50276 TGAAGCTGAC
* * * * *
50286 GAT GAT GAT GAC GAT GAAT -CT GAC GAT GAA GAT GAT GAC GAT GAT
1 GAT GAT GAT GAT GAT G-AT GAT GAT GAT GAT GAT GAT GAT GAT GAT
50331 GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT
50346 CCAAACAAGT
Statistics
Matches: 45, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
2 1 0.02
3 42 0.93
4 2 0.04
ACGTcount: A:0.35, C:0.07, G:0.32, T:0.27
Consensus pattern (3 bp):
GAT
Found at i:50297 original size:12 final size:12
Alignment explanation
Indices: 50282--50345 Score: 67
Period size: 12 Copynumber: 5.1 Consensus size: 12
50272 AAGATGAAGC
50282 TGACGATGATGA
1 TGACGATGATGA
*
50294 TGACGATGAAT-C
1 TGACGATG-ATGA
50306 TGACGATGAAGATGA
1 TGACGAT---GATGA
50321 TGACGATGATGA
1 TGACGATGATGA
*
50333 TGATGATGATGA
1 TGACGATGATGA
50345 T
1 T
50346 CCAAACAAGT
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
12 32 0.73
13 2 0.05
14 2 0.05
15 8 0.18
ACGTcount: A:0.34, C:0.08, G:0.31, T:0.27
Consensus pattern (12 bp):
TGACGATGATGA
Found at i:51571 original size:16 final size:16
Alignment explanation
Indices: 51539--51572 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
51529 TATCCACAAC
* *
51539 AAAGTGTCGATTTAAA
1 AAAGTGTCGACTGAAA
51555 AAAGTGTCGACTGAAA
1 AAAGTGTCGACTGAAA
51571 AA
1 AA
51573 TGTAATAGAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.47, C:0.09, G:0.21, T:0.24
Consensus pattern (16 bp):
AAAGTGTCGACTGAAA
Found at i:51917 original size:22 final size:23
Alignment explanation
Indices: 51869--51917 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 23
51859 AAATTACATA
51869 ACTTTTAAAAAAAAGTATCGATC
1 ACTTTTAAAAAAAAGTATCGATC
* * *
51892 -CTTTTTATAAAAAGTATGGA-C
1 ACTTTTAAAAAAAAGTATCGATC
51913 ACTTT
1 ACTTT
51918 CAATATAATA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
21 1 0.05
22 21 0.95
ACGTcount: A:0.41, C:0.12, G:0.10, T:0.37
Consensus pattern (23 bp):
ACTTTTAAAAAAAAGTATCGATC
Found at i:51966 original size:23 final size:23
Alignment explanation
Indices: 51935--51998 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
51925 ATAGGTAAAA
*
51935 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
51958 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
51981 ATATAATATAATAGGTAG
1 ATATAATGTAATAGGTAG
51999 TTGTTATATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.05, G:0.20, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:52005 original size:23 final size:24
Alignment explanation
Indices: 51943--52007 Score: 82
Period size: 23 Copynumber: 2.8 Consensus size: 24
51933 AAATATGATG
*
51943 TAATAGGTAG-CGCTTATATAATG
1 TAATAGGTAGTCGCTTATATAATA
*
51966 TAATAGGTA-TCGTTTATATAATA
1 TAATAGGTAGTCGCTTATATAATA
*
51989 TAATAGGTAGTTG-TTATAT
1 TAATAGGTAGTCGCTTATAT
52008 TGTAAAGTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
23 35 0.95
24 2 0.05
ACGTcount: A:0.35, C:0.05, G:0.18, T:0.42
Consensus pattern (24 bp):
TAATAGGTAGTCGCTTATATAATA
Found at i:52397 original size:23 final size:23
Alignment explanation
Indices: 52366--52438 Score: 92
Period size: 23 Copynumber: 3.2 Consensus size: 23
52356 ATAGGTAAAA
*
52366 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
52389 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* * *
52412 ATAAAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
52435 ATAT
1 ATAT
52439 TGTAAAGTAT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.36, C:0.04, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:52634 original size:432 final size:430
Alignment explanation
Indices: 51731--52782 Score: 1912
Period size: 431 Copynumber: 2.4 Consensus size: 430
51721 GTTAATGTTG
* *
51731 TTAAATT-TAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGTAA
1 TTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
51795 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTA-TTAAAAAAATTGAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACA-TACTTAAAAAAATTGAAACAT
*
51859 AAATTACATAACTTTTAAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATAT
130 AAATTACATATC-TTT-AAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATAT
*
51924 AATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATA
193 AATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATAAAATA
* *
51989 TAATAGGTAGTTGTTATATTGTAAAGTATTTATCCTTTTTATAAAAGTGTCTATACTTTTTTCAC
258 TAATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTTCAC
52054 TGTGGAAAACATTAATTTAAGGTTACATTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATA
323 TGTGGAAAACATTAATTTAAGGTTACATTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATA
52119 GGCGTCTAATGATTTATTTTTTACATTACGATATATATTATTA
388 GGCGTCTAATGATTTATTTTTTACATTACGATATATATTATTA
52162 TTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
*
52227 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACATACTTAAAAAAAATTGAAAAAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACATACTT-AAAAAAATTGAAACAT
52292 AAATTACATATCTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
130 AAATTACATATCTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
*
52357 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATAAAATGTA
195 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATAAAATATA
52422 ATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTTCACTG
260 ATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTTCACTG
* *
52487 TGGACAACATTAATTTAATGTTATC-TTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAG
325 TGGAAAACATTAATTTAAGGTTA-CATTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAG
*
52551 GCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
389 GCGTCTAATGATTTATTTTTTACATTACGATATATATTATTA
* *
52593 TTAAATTAAAAAATTCTTAATATTATTTTATAAATTATCAAAACAATCAAATAATTTTTTGTGCA
1 TTAAATT-AAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCA
52658 AATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACATACTTAAAAAAATTGAAACAT
65 AATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACATACTTAAAAAAATTGAAACAT
52723 AAATTACATATCTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
130 AAATTACATATCTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAA
52783 CATATTATAA
Statistics
Matches: 602, Mismatches: 14, Indels: 10
0.96 0.02 0.02
Matches are distributed among these distances:
431 368 0.61
432 208 0.35
433 26 0.04
ACGTcount: A:0.42, C:0.08, G:0.11, T:0.39
Consensus pattern (430 bp):
TTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACATACTTAAAAAAATTGAAACATA
AATTACATATCTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAAT
AGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATAAAATATAA
TAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTTCACTGT
GGAAAACATTAATTTAAGGTTACATTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGC
GTCTAATGATTTATTTTTTACATTACGATATATATTATTA
Found at i:53167 original size:180 final size:178
Alignment explanation
Indices: 52818--53304 Score: 841
Period size: 180 Copynumber: 2.7 Consensus size: 178
52808 GCAATGCTAT
52818 CGGTATAAATATACCGATTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
1 CGGTATAAATATACCGATTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
52883 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACATTGTCAAAAAGTGTCGACA
66 GTGTCGGTACTTTA-GTCCAGATTGGAAGAAAAATGTGTCGATACATT-TCAAAAAGTGTCGACA
*
52948 TTTACACATCGGAACCCATAATTATAATGTAATAGATAATTTGTAATATAAC
129 TTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTGT-A-ATAAC
53000 CGGTATAAATATACCGATTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
1 CGGTATAAATATACCGATTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
*
53065 GTGTCGGTACTTTA-TCCAGATTGGAAGAAAAATGTGTCGATACGATTTAAAAAAGTGTCGACAT
66 GTGTCGGTACTTTAGTCCAGATTGGAAGAAAAATGTGTCGATAC-ATTTCAAAAAGTGTCGACAT
*
53129 TTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTGTAATAAC
130 TTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTGTAATAAC
* * * *
53178 CGGTATAAATATACTGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTCTAATATT
1 CGGTATAAATATACCGATTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
53243 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTTCAAAAAGTGTCG
66 GTGTCGGTACTTTA-GTCCAGATTGGAAGAAAAATGTGTCGATA-CATTTCAAAAAGTGTCG
53305 GTAATTTTAA
Statistics
Matches: 293, Mismatches: 8, Indels: 10
0.94 0.03 0.03
Matches are distributed among these distances:
178 80 0.27
179 1 0.00
180 129 0.44
181 4 0.01
182 79 0.27
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.33
Consensus pattern (178 bp):
CGGTATAAATATACCGATTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
GTGTCGGTACTTTAGTCCAGATTGGAAGAAAAATGTGTCGATACATTTCAAAAAGTGTCGACATT
TACACATCGGAACCCAGAATTATAATGTAATAGATAATTTGTAATAAC
Found at i:55799 original size:25 final size:25
Alignment explanation
Indices: 55771--55835 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
55761 TTATCATTAA
55771 ATTTAGGTATGTACAATAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
****
55796 ATTTAGGTATGTTTGTTAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
*
55821 ATTTAGGTATATACA
1 ATTTAGGTATGTACA
55836 TCTTTTGAGT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.35, C:0.09, G:0.14, T:0.42
Consensus pattern (25 bp):
ATTTAGGTATGTACAATAACTACAT
Found at i:56209 original size:23 final size:23
Alignment explanation
Indices: 56178--56240 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
56168 ATAGGTAAAA
*
56178 ATATGATGTAATAGGTAACGCTT
1 ATATAATGTAATAGGTAACGCTT
* *
56201 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAACGCTT
56224 ATATAATGTAATAGGTA
1 ATATAATGTAATAGGTA
56241 GTGGTTATAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.05, G:0.19, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAACGCTT
Found at i:56248 original size:23 final size:22
Alignment explanation
Indices: 56178--56250 Score: 83
Period size: 23 Copynumber: 3.2 Consensus size: 22
56168 ATAGGTAAAA
* *
56178 ATATGATGTAATAGGTAACGCTT
1 ATATAATGTAATAGGT-ATGCTT
*
56201 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAT-GCTT
*
56224 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTA-TGCTT
56247 ATAT
1 ATAT
56251 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
22 1 0.02
23 42 0.95
24 1 0.02
ACGTcount: A:0.36, C:0.04, G:0.21, T:0.40
Consensus pattern (22 bp):
ATATAATGTAATAGGTATGCTT
Found at i:56552 original size:25 final size:25
Alignment explanation
Indices: 56514--56563 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
56504 AAATCAATTA
*
56514 AACATTGTTGTGGGTACATTATTTG
1 AACATTGTTATGGGTACATTATTTG
56539 AACATTGTTATGGGTACATTATTTG
1 AACATTGTTATGGGTACATTATTTG
56564 GAAAAATAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.26, C:0.08, G:0.22, T:0.44
Consensus pattern (25 bp):
AACATTGTTATGGGTACATTATTTG
Found at i:57294 original size:39 final size:39
Alignment explanation
Indices: 57251--57337 Score: 156
Period size: 39 Copynumber: 2.2 Consensus size: 39
57241 TCCGATGCTC
*
57251 ATCAAAATCCAAAGCTCATATGGTGCCAAGCAAAAGGAA
1 ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
*
57290 ATCAAAATCCAAATCTCATATGATGCCAAGCAAAAGGAA
1 ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
57329 ATCAAAATC
1 ATCAAAATC
57338 TACAACTGAG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.48, C:0.21, G:0.14, T:0.17
Consensus pattern (39 bp):
ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
Found at i:57786 original size:23 final size:23
Alignment explanation
Indices: 57755--57827 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
57745 ATAAGTAAAA
*
57755 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
57778 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
57801 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
57824 ATAT
1 ATAT
57828 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:58214 original size:23 final size:23
Alignment explanation
Indices: 58183--58255 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
58173 ATAGGTAAAA
*
58183 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
58206 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
58229 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
58252 ATAT
1 ATAT
58256 TGTAAAGTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:58349 original size:428 final size:430
Alignment explanation
Indices: 57553--58548 Score: 1847
Period size: 428 Copynumber: 2.3 Consensus size: 430
57543 GTTAATGTTG
* *
57553 TTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAATAATCAAATAATTTTTTGTGCAAA
1 TTAAATTAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAA
* *
57618 TGAAATTATTAAATTAATATTGTAGGTAGAAAACATGAAACACTGTT-AAAAAAATTGAAACATA
66 TGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATA
57682 AATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAAT
131 AATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAAT
*
57747 AAGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAA
196 AAGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAA
*
57812 TAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGT
261 TAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGT
57877 GGAAAACATTAATTTAAGGTTATCCTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGC
326 GGAAAACATTAATTTAAGGTTATCCTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGC
57942 GTCTAATGA-TTATTTTTTACGTTACGATATAT-TTATTA
391 GTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
*
57980 TTAAATTAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAA
1 TTAAATTAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAA
*
58045 TGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAAGACTATTAAAAAAAATTGAAACATA
66 TGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATA
58110 AATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAAT
131 AATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAAT
*
58175 AGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAA
196 AAGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAA
58240 TAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGT
261 TAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGT
* *
58305 GGAAAATATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGC
326 GGAAAACATTAATTTAAGGTTATCCTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGC
58370 GTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
391 GTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
*
58410 TTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAACCAAATAATTTTTTGTGCAA
1 TTAAATT-AAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
58475 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAA-TGAAACAT
65 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
58539 AAATTACATA
130 AAATTACATA
58549 CATTTTTATA
Statistics
Matches: 551, Mismatches: 14, Indels: 5
0.97 0.02 0.01
Matches are distributed among these distances:
427 106 0.19
428 281 0.51
429 23 0.04
430 31 0.06
431 110 0.20
ACGTcount: A:0.42, C:0.08, G:0.12, T:0.38
Consensus pattern (430 bp):
TTAAATTAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAA
TGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATA
AATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAAT
AAGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAA
TAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGT
GGAAAACATTAATTTAAGGTTATCCTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGC
GTCTAATGATTTATTTTTTACGTTACGATATATATTATTA
Found at i:59160 original size:21 final size:20
Alignment explanation
Indices: 59074--59231 Score: 86
Period size: 21 Copynumber: 7.8 Consensus size: 20
59064 AAATGACCAA
**
59074 CAAAATCGCAACGCGA-AAT
1 CAAAATCGCAACGCGATTTT
* ***
59093 AAAAATCGCAACGCGATCCC
1 CAAAATCGCAACGCGATTTT
* ** *
59113 CAGAATCGCAAATC-AGTTTC
1 CAAAATCGCAACGCGA-TTTT
59133 CAAAATCGCAACGCGATTCTT
1 CAAAATCGCAACGCGATT-TT
* * * *
59154 GAAAATCGCAATGCGATAGTA
1 CAAAATCGCAACGCGAT-TTT
* **
59175 CAAATTCGCATTGCGATTTT
1 CAAAATCGCAACGCGATTTT
* *
59195 CCAAAATCGCAACGCGAATAT
1 -CAAAATCGCAACGCGATTTT
*
59216 GAAAATCGCAACGCGA
1 CAAAATCGCAACGCGA
59232 ACACATAAAT
Statistics
Matches: 104, Mismatches: 29, Indels: 11
0.72 0.20 0.08
Matches are distributed among these distances:
19 16 0.15
20 41 0.39
21 47 0.45
ACGTcount: A:0.39, C:0.25, G:0.17, T:0.19
Consensus pattern (20 bp):
CAAAATCGCAACGCGATTTT
Found at i:59260 original size:20 final size:20
Alignment explanation
Indices: 59198--59391 Score: 221
Period size: 20 Copynumber: 9.7 Consensus size: 20
59188 CGATTTTCCA
* ** *
59198 AAATCGCAACGCGAATATGA
1 AAATCGCAACGCGTATCCGT
* *
59218 AAATCGCAACGCG-AACACAT
1 AAATCGCAACGCGTATC-CGT
59238 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
59258 AAATCGCAACGTGTATCCGT
1 AAATCGCAACGCGTATCCGT
**
59278 AAATCGCAACGCGTATGGGT
1 AAATCGCAACGCGTATCCGT
*
59298 AAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
59318 ATATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
* * *
59338 AAATCGCAACG-ATAATACAT
1 AAATCGCAACGCGT-ATCCGT
59358 AAAATCGCAACGCGTATCCGT
1 -AAATCGCAACGCGTATCCGT
59379 AAATCGCAACGCG
1 AAATCGCAACGCG
59392 ATATTTAAAG
Statistics
Matches: 146, Mismatches: 23, Indels: 10
0.82 0.13 0.06
Matches are distributed among these distances:
19 2 0.01
20 126 0.86
21 17 0.12
22 1 0.01
ACGTcount: A:0.36, C:0.26, G:0.20, T:0.19
Consensus pattern (20 bp):
AAATCGCAACGCGTATCCGT
Found at i:59282 original size:60 final size:60
Alignment explanation
Indices: 59198--59391 Score: 253
Period size: 60 Copynumber: 3.2 Consensus size: 60
59188 CGATTTTCCA
* ** * *
59198 AAATCGCAACGCGAATATGAAAATCGCAACGCGAACACATAAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGT
* * *** *
59258 AAATCGCAACGTGTATCCGTAAATCGCAACGCGTATGGGTAAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGT
* **
59318 ATATCGCAACGCGTATCCGTAAATCGCAACGATAATACATAAAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGTAAATCGCAACGCGAATACAT-AAATCGCAACGCGTATCCGT
59379 AAATCGCAACGCG
1 AAATCGCAACGCG
59392 ATATTTAAAG
Statistics
Matches: 112, Mismatches: 21, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
60 81 0.72
61 31 0.28
ACGTcount: A:0.36, C:0.26, G:0.20, T:0.19
Consensus pattern (60 bp):
AAATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGT
Found at i:59810 original size:33 final size:33
Alignment explanation
Indices: 59771--59841 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
59761 TTCACTTAGA
*
59771 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTCCGAT
* *
59804 TTTCATTTCGCGTTGCTATTCTCTCGTTCCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTCCGAT
59837 TTTCA
1 TTTCA
59842 AGTTAGTATT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.11, C:0.25, G:0.15, T:0.48
Consensus pattern (33 bp):
TTTCATTTCGCGTTACGATTCTCTCGTTCCGAT
Found at i:59947 original size:21 final size:20
Alignment explanation
Indices: 59921--60024 Score: 87
Period size: 21 Copynumber: 5.5 Consensus size: 20
59911 TGCAGAAGAG
59921 TCGCAACGAGATAAATGAAAA
1 TCGCAACGAGA-AAATGAAAA
* ***
59942 TCGCAACGAGAGAATGACTG
1 TCGCAACGAGAAAATGAAAA
59962 TCGCAACGAGAGAAATGAAAA
1 TCGCAACGAGA-AAATGAAAA
*
59983 GCGCAACGAG---A-G--AA
1 TCGCAACGAGAAAATGAAAA
*
59997 TCGCAACGCG-AAATGAAAA
1 TCGCAACGAGAAAATGAAAA
60016 TCGCAACGA
1 TCGCAACGA
60025 CAGAATCGCA
Statistics
Matches: 65, Mismatches: 12, Indels: 14
0.71 0.13 0.15
Matches are distributed among these distances:
14 10 0.15
16 2 0.03
17 2 0.03
19 10 0.15
20 16 0.25
21 25 0.38
ACGTcount: A:0.45, C:0.19, G:0.25, T:0.11
Consensus pattern (20 bp):
TCGCAACGAGAAAATGAAAA
Found at i:59965 original size:20 final size:21
Alignment explanation
Indices: 59919--59997 Score: 92
Period size: 21 Copynumber: 3.8 Consensus size: 21
59909 TTTGCAGAAG
*
59919 AGTCGCAACGAGATAAATGAAA
1 AGTCGCAACGAGA-GAATGAAA
*
59941 A-TCGCAACGAGAGAATG-AC
1 AGTCGCAACGAGAGAATGAAA
*
59960 TGTCGCAACGAGAGAAATGAAA
1 AGTCGCAACGAGAG-AATGAAA
59982 AG-CGCAACGAGAGAAT
1 AGTCGCAACGAGAGAAT
59998 CGCAACGCGA
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
19 1 0.02
20 19 0.39
21 26 0.53
22 3 0.06
ACGTcount: A:0.46, C:0.16, G:0.27, T:0.11
Consensus pattern (21 bp):
AGTCGCAACGAGAGAATGAAA
Found at i:59978 original size:41 final size:41
Alignment explanation
Indices: 59920--59997 Score: 138
Period size: 41 Copynumber: 1.9 Consensus size: 41
59910 TTGCAGAAGA
* *
59920 GTCGCAACGAGATAAATGAAAATCGCAACGAGAGAATGACT
1 GTCGCAACGAGAGAAATGAAAAGCGCAACGAGAGAATGACT
59961 GTCGCAACGAGAGAAATGAAAAGCGCAACGAGAGAAT
1 GTCGCAACGAGAGAAATGAAAAGCGCAACGAGAGAAT
59998 CGCAACGCGA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.45, C:0.17, G:0.27, T:0.12
Consensus pattern (41 bp):
GTCGCAACGAGAGAAATGAAAAGCGCAACGAGAGAATGACT
Found at i:60013 original size:33 final size:33
Alignment explanation
Indices: 59973--60042 Score: 122
Period size: 33 Copynumber: 2.1 Consensus size: 33
59963 CGCAACGAGA
*
59973 GAAATGAAAAGCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAAGCGCAACGACAGAATCGCAACGC
*
60006 GAAATGAAAATCGCAACGACAGAATCGCAACGC
1 GAAATGAAAAGCGCAACGACAGAATCGCAACGC
60039 GAAA
1 GAAA
60043 CCAAAATCGC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.47, C:0.21, G:0.24, T:0.07
Consensus pattern (33 bp):
GAAATGAAAAGCGCAACGACAGAATCGCAACGC
Found at i:60049 original size:33 final size:33
Alignment explanation
Indices: 59979--60053 Score: 114
Period size: 33 Copynumber: 2.3 Consensus size: 33
59969 GAGAGAAATG
* * **
59979 AAAAGCGCAACGAGAGAATCGCAACGCGAAATG
1 AAAATCGCAACGACAGAATCGCAACGCGAAACC
60012 AAAATCGCAACGACAGAATCGCAACGCGAAACC
1 AAAATCGCAACGACAGAATCGCAACGCGAAACC
60045 AAAATCGCA
1 AAAATCGCA
60054 TTGCGATTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.47, C:0.25, G:0.21, T:0.07
Consensus pattern (33 bp):
AAAATCGCAACGACAGAATCGCAACGCGAAACC
Found at i:60052 original size:19 final size:18
Alignment explanation
Indices: 59995--60053 Score: 54
Period size: 19 Copynumber: 3.4 Consensus size: 18
59985 GCAACGAGAG
*
59995 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAA-CAA
*
60014 AATCGCAA--CG--ACAG
1 AATCGCAACGCGAAACAA
60028 AATCGCAACGCGAAACCAA
1 AATCGCAACGCGAAA-CAA
60047 AATCGCA
1 AATCGCA
60054 TTGCGATTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 10
0.71 0.07 0.22
Matches are distributed among these distances:
14 9 0.28
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 17 0.53
ACGTcount: A:0.46, C:0.27, G:0.19, T:0.08
Consensus pattern (18 bp):
AATCGCAACGCGAAACAA
Found at i:60071 original size:19 final size:19
Alignment explanation
Indices: 60049--60146 Score: 81
Period size: 19 Copynumber: 5.7 Consensus size: 19
60039 GAAACCAAAA
*
60049 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
60068 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
60082 TCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
60101 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* * *
60115 TCTCGTTGCGATTGTCATC
1 TCGCGTTGCGATTTTCATT
60134 TCGCGTTGCGATT
1 TCGCGTTGCGATT
60147 CTCTCGTTGC
Statistics
Matches: 63, Mismatches: 6, Indels: 20
0.71 0.07 0.22
Matches are distributed among these distances:
14 20 0.32
16 5 0.08
17 6 0.10
19 32 0.51
ACGTcount: A:0.10, C:0.24, G:0.22, T:0.43
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:60090 original size:14 final size:14
Alignment explanation
Indices: 60071--60160 Score: 81
Period size: 14 Copynumber: 5.7 Consensus size: 14
60061 TTTCATTTCG
60071 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
60085 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
60104 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
60118 CGTTGCGATTGTCATCT
1 CGTTGCGA-T-TC-TCT
60135 CGCGTTGCGATTCTCT
1 --CGTTGCGATTCTCT
60151 CGTTGCGATT
1 CGTTGCGATT
60161 TTCATTTCAA
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
14 28 0.44
15 1 0.02
16 8 0.12
17 8 0.12
18 1 0.02
19 18 0.28
ACGTcount: A:0.09, C:0.26, G:0.23, T:0.42
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:60096 original size:33 final size:33
Alignment explanation
Indices: 60054--60168 Score: 212
Period size: 33 Copynumber: 3.5 Consensus size: 33
60044 CAAAATCGCA
60054 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
60087 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
* *
60120 TTGCGATTGTCATCTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
60153 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
60169 AACCAAAAGA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 78 1.00
ACGTcount: A:0.10, C:0.24, G:0.21, T:0.45
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
Found at i:62105 original size:93 final size:93
Alignment explanation
Indices: 61864--62243 Score: 726
Period size: 93 Copynumber: 4.1 Consensus size: 93
61854 TAGATTGCTT
*
61864 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
61929 TTTGTCTTTGTTTTGTC-TTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
61956 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
62021 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
* *
62049 AGTAAATTTGTTCGGTTGCTACCAATTCTGCTAAACTGTGTATTCTATAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
62114 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
62142 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
62207 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
62235 AGTAAATTT
1 AGTAAATTT
62244 ATCCATTCAA
Statistics
Matches: 282, Mismatches: 5, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
92 81 0.29
93 201 0.71
ACGTcount: A:0.23, C:0.13, G:0.19, T:0.46
Consensus pattern (93 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:62345 original size:19 final size:18
Alignment explanation
Indices: 62287--62414 Score: 110
Period size: 19 Copynumber: 7.3 Consensus size: 18
62277 TAGTTTACTT
*
62287 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAAC--AAAA
62307 TCGCAACGCGAAACAAAA
1 TCGCAACGCGAAACAAAA
*
62325 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAA-CAAAA
*
62344 TCGCAA--CG--ACAGAA
1 TCGCAACGCGAAACAAAA
62358 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAA-CAAAA
* *
62377 TCGCAA--CG--ATAAGA
1 TCGCAACGCGAAACAAAA
62391 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAA-CAAAA
62410 TCGCA
1 TCGCA
62415 TTGCGATTTT
Statistics
Matches: 88, Mismatches: 9, Indels: 23
0.73 0.08 0.19
Matches are distributed among these distances:
14 18 0.20
15 2 0.02
16 4 0.05
17 4 0.05
18 19 0.22
19 28 0.32
20 13 0.15
ACGTcount: A:0.46, C:0.27, G:0.17, T:0.09
Consensus pattern (18 bp):
TCGCAACGCGAAACAAAA
Found at i:62365 original size:33 final size:32
Alignment explanation
Indices: 62322--62414 Score: 141
Period size: 33 Copynumber: 2.8 Consensus size: 32
62312 ACGCGAAACA
**
62322 AAATCGCAACGCGAAATGAAAATCGCAACGAC
1 AAATCGCAACGCGAAACCAAAATCGCAACGAC
*
62354 AGAATCGCAACGCGAAACCAAAATCGCAACGAT
1 A-AATCGCAACGCGAAACCAAAATCGCAACGAC
62387 AAGATCGCAACGCGAAACCAAAATCGCA
1 AA-ATCGCAACGCGAAACCAAAATCGCA
62415 TTGCGATTTT
Statistics
Matches: 56, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
32 2 0.04
33 54 0.96
ACGTcount: A:0.46, C:0.27, G:0.18, T:0.09
Consensus pattern (32 bp):
AAATCGCAACGCGAAACCAAAATCGCAACGAC
Found at i:62432 original size:19 final size:19
Alignment explanation
Indices: 62410--62544 Score: 137
Period size: 19 Copynumber: 7.6 Consensus size: 19
62400 GAAACCAAAA
*
62410 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
62429 TCGCGTTGCGA--TTC-TT
1 TCGCGTTGCGATTTTCATT
62445 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
62462 TCGCGTTGCGA--TTC-TG
1 TCGCGTTGCGATTTTCATT
62478 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
**
62495 TCGCGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTTCATT
*
62514 TCGCGTTGCGATTTTAAGTT
1 TCGCGTTGCGATTTTCA-TT
*
62534 TCGTGTTGCGA
1 TCGCGTTGCGA
62545 AAGTAAACTA
Statistics
Matches: 97, Mismatches: 8, Indels: 21
0.77 0.06 0.17
Matches are distributed among these distances:
14 16 0.16
16 11 0.11
17 11 0.11
19 47 0.48
20 12 0.12
ACGTcount: A:0.10, C:0.19, G:0.24, T:0.46
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:62451 original size:14 final size:14
Alignment explanation
Indices: 62432--62488 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
62422 TTTCATTTCG
62432 CGTTGCGATTCTTT
1 CGTTGCGATTCTTT
62446 CGTTGCGATTTTCATTT
1 CGTTGCGA--TTC-TTT
*
62463 CGCGTTGCGATTCTGT
1 --CGTTGCGATTCTTT
62479 CGTTGCGATT
1 CGTTGCGATT
62489 TTCATTTCGC
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 18 0.49
16 5 0.14
17 6 0.16
19 8 0.22
ACGTcount: A:0.09, C:0.21, G:0.25, T:0.46
Consensus pattern (14 bp):
CGTTGCGATTCTTT
Found at i:62457 original size:33 final size:33
Alignment explanation
Indices: 62415--62507 Score: 177
Period size: 33 Copynumber: 2.8 Consensus size: 33
62405 CAAAATCGCA
*
62415 TTGCGATTTTCATTTCGCGTTGCGATTCTTTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
62448 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
62481 TTGCGATTTTCATTTCGCGTTGCGATT
1 TTGCGATTTTCATTTCGCGTTGCGATT
62508 TTGGTTTCGC
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 59 1.00
ACGTcount: A:0.10, C:0.20, G:0.23, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
Found at i:63840 original size:14 final size:14
Alignment explanation
Indices: 63821--63856 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
63811 ATTGTTTAAT
63821 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
63835 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
63849 TGATTTGT
1 TGATTTGT
63857 GTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:63979 original size:19 final size:19
Alignment explanation
Indices: 63963--64060 Score: 143
Period size: 19 Copynumber: 5.4 Consensus size: 19
63953 AAAAATGACT
63963 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
63982 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
64001 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
64015 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
64034 ATCGCAATGCGGAAATGAAA
1 ATCGCAATGC-GAAATGAAA
64054 ATCGCAA
1 ATCGCAA
64061 CGAGAGAACC
Statistics
Matches: 71, Mismatches: 2, Indels: 11
0.85 0.02 0.13
Matches are distributed among these distances:
14 10 0.14
15 1 0.01
16 2 0.03
17 2 0.03
18 1 0.01
19 39 0.55
20 16 0.23
ACGTcount: A:0.46, C:0.17, G:0.22, T:0.14
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:64041 original size:52 final size:53
Alignment explanation
Indices: 63963--64078 Score: 216
Period size: 53 Copynumber: 2.2 Consensus size: 53
63953 AAAAATGACT
63963 ATCGCAATGCGAAATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
64015 ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
*
64068 ACCGCAATGCG
1 ATCGCAATGCG
64079 TTTATAATTT
Statistics
Matches: 62, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
52 29 0.47
53 33 0.53
ACGTcount: A:0.44, C:0.19, G:0.24, T:0.13
Consensus pattern (53 bp):
ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
Found at i:64122 original size:33 final size:33
Alignment explanation
Indices: 64085--64341 Score: 263
Period size: 33 Copynumber: 7.5 Consensus size: 33
64075 TGCGTTTATA
64085 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTC
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTC
*
64118 ATTTCGCATTGCGATTTTCATTTCGCATTGCGATTTTC
1 ATTTCGCATTGCGA--TTC-TCTCG--TTGCGATTTTC
64156 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTC
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTC
*
64189 ATTTCCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTC
1 ATTT-CGCATTGCGA--TTC-TCTCG--TTGCGATT-T-TC
* * * * *
64230 GTTGCG-ATTTTC-ATT-TCGCATTGCGATTTTC
1 ATTTCGCA-TTGCGATTCTCTCGTTGCGATTTTC
64261 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTC
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTC
*
64294 ATTTCGCATTGCGATT-TCAT-GTTGGGATTTTC
1 ATTTCGCATTGCGATTCTC-TCGTTGCGATTTTC
*
64326 ATTTCGCGTTGCGATT
1 ATTTCGCATTGCGATT
64342 GTAATTTCCG
Statistics
Matches: 190, Mismatches: 16, Indels: 37
0.78 0.07 0.15
Matches are distributed among these distances:
31 9 0.05
32 33 0.17
33 68 0.36
34 10 0.05
35 9 0.05
36 10 0.05
37 6 0.03
38 25 0.13
39 10 0.05
40 6 0.03
41 4 0.02
ACGTcount: A:0.14, C:0.22, G:0.18, T:0.46
Consensus pattern (33 bp):
ATTTCGCATTGCGATTCTCTCGTTGCGATTTTC
Found at i:64131 original size:19 final size:19
Alignment explanation
Indices: 64107--64341 Score: 269
Period size: 19 Copynumber: 13.4 Consensus size: 19
64097 GATTCTCTCG
64107 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
64126 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
64145 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
64164 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
64178 TTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
64198 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
64217 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
64231 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
64250 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
64269 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
64283 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
64302 TTGCGA-TTTCA--T-G--
1 TTGCGATTTTCATTTCGCA
* *
64315 TTGGGATTTTCATTTCGCG
1 TTGCGATTTTCATTTCGCA
64334 TTGCGATT
1 TTGCGATT
64342 GTAATTTCCG
Statistics
Matches: 186, Mismatches: 8, Indels: 44
0.78 0.03 0.18
Matches are distributed among these distances:
13 5 0.03
14 23 0.12
15 1 0.01
16 23 0.12
17 20 0.11
18 7 0.04
19 92 0.49
20 15 0.08
ACGTcount: A:0.14, C:0.22, G:0.18, T:0.46
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:64182 original size:52 final size:52
Alignment explanation
Indices: 64126--64310 Score: 361
Period size: 52 Copynumber: 3.5 Consensus size: 52
64116 TCATTTCGCA
64126 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCG
64178 TTGCGATTTTCATTTCCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCG
1 TTGCGATTTTCATTT-CGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCG
64231 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCG
64283 TTGCGATTTTCATTTCGCATTGCGATTT
1 TTGCGATTTTCATTTCGCATTGCGATTT
64311 CATGTTGGGA
Statistics
Matches: 132, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
52 80 0.61
53 52 0.39
ACGTcount: A:0.14, C:0.23, G:0.17, T:0.46
Consensus pattern (52 bp):
TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCG
Found at i:66630 original size:12 final size:12
Alignment explanation
Indices: 66613--66637 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
66603 TCTTCGGGGA
66613 CTTTTTCTTCTT
1 CTTTTTCTTCTT
66625 CTTTTTCTTCTT
1 CTTTTTCTTCTT
66637 C
1 C
66638 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:66846 original size:24 final size:24
Alignment explanation
Indices: 66812--66858 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
66802 CTGAAACATC
66812 ATCAAAATCCGTG-TATTGACCAAT
1 ATCAAAATCCG-GATATTGACCAAT
*
66836 ATCAAAGTCCGGATATTGACCAA
1 ATCAAAATCCGGATATTGACCAA
66859 GACCAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (24 bp):
ATCAAAATCCGGATATTGACCAAT
Found at i:67567 original size:20 final size:20
Alignment explanation
Indices: 67539--67788 Score: 277
Period size: 20 Copynumber: 12.5 Consensus size: 20
67529 AAATTTCAGT
* *
67539 GTTGTGATTTACAGATTCTC
1 GTTGCGATTTACGGATTCTC
67559 GTTGCGATTTACGGATTCTC
1 GTTGCGATTTACGGATTCTC
*
67579 GTTGCGATTTACAGATTCTC
1 GTTGCGATTTACGGATTCTC
*
67599 GTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATTCTC
*
67619 GTTGCGATTTACAGATTCTC
1 GTTGCGATTTACGGATTCTC
*
67639 GTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATTCTC
* *
67659 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCTC
* * *
67679 GTTGCGATATACGGATACGC
1 GTTGCGATTTACGGATTCTC
* * *
67699 ATTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCTC
* * *
67719 GTTGCGATATACGGATACAC
1 GTTGCGATTTACGGATTCTC
* *
67739 GTTGCGATTTATGTG-TTCGC
1 GTTGCGATTTACG-GATTCTC
* ** *
67759 GTTGCGATTTTCATATTCGC
1 GTTGCGATTTACGGATTCTC
67779 GTTGCGATTT
1 GTTGCGATTT
67789 TGGAAAATCG
Statistics
Matches: 202, Mismatches: 26, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
20 201 1.00
21 1 0.00
ACGTcount: A:0.20, C:0.18, G:0.25, T:0.38
Consensus pattern (20 bp):
GTTGCGATTTACGGATTCTC
Found at i:67805 original size:21 final size:21
Alignment explanation
Indices: 67775--67857 Score: 78
Period size: 21 Copynumber: 4.0 Consensus size: 21
67765 ATTTTCATAT
*
67775 TCGCGTTGCGATTTTGGAAAA
1 TCGCATTGCGATTTTGGAAAA
* * * **
67796 TCGCAATGCGAATTTGTACTA
1 TCGCATTGCGATTTTGGAAAA
*
67817 TCGCATTGCGATTTT-CAAGAA
1 TCGCATTGCGATTTTGGAA-AA
*
67838 TCGCGTTGCGATTTTGGAAA
1 TCGCATTGCGATTTTGGAAA
67858 CTGATTTGCG
Statistics
Matches: 47, Mismatches: 13, Indels: 4
0.73 0.20 0.06
Matches are distributed among these distances:
20 1 0.02
21 44 0.94
22 2 0.04
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTTGGAAAA
Found at i:67848 original size:42 final size:43
Alignment explanation
Indices: 67755--67853 Score: 100
Period size: 42 Copynumber: 2.4 Consensus size: 43
67745 ATTTATGTGT
* *
67755 TCGCGTTGCG-ATTT-TCATATTCGCGTTGCGATTTTGGAAAA
1 TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTTTGCAAAA
**
67796 TCGCAATGCGAATTTGT-ACTA-TCGCATTGCGATTTT-CAAGAA
1 TCGCGTTGCGAATTTGTCA-TATTCGCATTGCGATTTTGCAA-AA
*
67838 TCGCGTTGCGATTTTG
1 TCGCGTTGCGAATTTG
67854 GAAACTGATT
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
41 10 0.21
42 34 0.72
43 3 0.06
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.37
Consensus pattern (43 bp):
TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTTTGCAAAA
Found at i:68080 original size:55 final size:55
Alignment explanation
Indices: 67995--68126 Score: 151
Period size: 55 Copynumber: 2.4 Consensus size: 55
67985 GATTTTCTCT
* * *
67995 TTTTTTTTTGTGAATAGGAAGACAGGTTGTAATCCCAACGTCTTCACTGTAGTTA
1 TTTTTTTTTGTGAATAGGAAGACAGGTTGTAATCACAACGTCTTCACTATAGCTA
* * * *
68050 -TTTTTTTTGTGAATAGTGAAGA-TGGTTTGTAATCACACCGTGTTTACTATAGCTA
1 TTTTTTTTTGTGAATAG-GAAGACAGG-TTGTAATCACAACGTCTTCACTATAGCTA
*
68105 TTTTTTTTTGGTGAATAAGAAG
1 TTTTTTTTT-GTGAATAGGAAG
68127 GGTTGTATAC
Statistics
Matches: 65, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
54 18 0.28
55 28 0.43
56 12 0.18
57 7 0.11
ACGTcount: A:0.26, C:0.11, G:0.20, T:0.43
Consensus pattern (55 bp):
TTTTTTTTTGTGAATAGGAAGACAGGTTGTAATCACAACGTCTTCACTATAGCTA
Found at i:71396 original size:160 final size:161
Alignment explanation
Indices: 70923--71396 Score: 682
Period size: 161 Copynumber: 3.0 Consensus size: 161
70913 GCAAGCAATT
* *
70923 AACATTATTGTCATAAAATCATGAAACGTCTAGAGATCTTAAAGACAAAGATGACCAAAATGCTA
1 AACATTATTGTCATAAAATCATGAAACGCCTAGAGATCTTAAAGACAAAGATGACCAAAATGCTC
* * * * *
70988 TTTATTGTTAAATGACCAGAATAGAACAATTTAATAAACTAACATATGTAACAGACTAATAAACC
66 TTTAGTGTTAAATGACCAGAATAGAACAACTTAATAAACTAATAGATGTAACAGACTAATAAACT
* * *
71053 CTTGCATAACATACT-GAATGTGAACTACATA
131 CTTGCATAACGTTCTAG-ATGTGAACTACAGA
* * * *
71084 AACATTATTGTCATAAAATCATGAAACACCTAGAGATCTTATAGACAATGATGCCCAAAATGCTC
1 AACATTATTGTCATAAAATCATGAAACGCCTAGAGATCTTAAAGACAAAGATGACCAAAATGCTC
* * * *
71149 TTTAGTGTTAAATGACCAAAATAGAAAAACTTAATAAACTAATAGATATAACAGAGTAATAAACT
66 TTTAGTGTTAAATGACCAGAATAGAACAACTTAATAAACTAATAGATGTAACAGACTAATAAACT
* *
71214 CTTGCATAACGTTATAGATGTGAACTATAGA
131 CTTGCATAACGTTCTAGATGTGAACTACAGA
* * * * *
71245 AACATTATTGTCATAAAATCATGAAACGCCTAGAAACCTTAGAGACAAAGAAGACCAAAATGATC
1 AACATTATTGTCATAAAATCATGAAACGCCTAGAGATCTTAAAGACAAAGATGACCAAAATGCTC
* *
71310 TTTAGTGTT-AATGACCAGAATAGAGCAACTTAATAAACTCATAGATGTAACAGACTAATAAACT
66 TTTAGTGTTAAATGACCAGAATAGAACAACTTAATAAACTAATAGATGTAACAGACTAATAAACT
71374 CTTGCATAACGTTCTAGATGTGA
131 CTTGCATAACGTTCTAGATGTGA
71397 GGGCGAGAGA
Statistics
Matches: 277, Mismatches: 35, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
160 71 0.26
161 205 0.74
162 1 0.00
ACGTcount: A:0.44, C:0.15, G:0.13, T:0.27
Consensus pattern (161 bp):
AACATTATTGTCATAAAATCATGAAACGCCTAGAGATCTTAAAGACAAAGATGACCAAAATGCTC
TTTAGTGTTAAATGACCAGAATAGAACAACTTAATAAACTAATAGATGTAACAGACTAATAAACT
CTTGCATAACGTTCTAGATGTGAACTACAGA
Found at i:83158 original size:21 final size:20
Alignment explanation
Indices: 83072--83229 Score: 86
Period size: 21 Copynumber: 7.8 Consensus size: 20
83062 AAATGACCAA
**
83072 CAAAATCGCAACGCGA-AAT
1 CAAAATCGCAACGCGATTTT
* ***
83091 AAAAATCGCAACGCGATCCC
1 CAAAATCGCAACGCGATTTT
* ** *
83111 CAGAATCGCAAATC-AGTTTC
1 CAAAATCGCAACGCGA-TTTT
83131 CAAAATCGCAACGCGATTCTT
1 CAAAATCGCAACGCGATT-TT
* * * *
83152 GAAAATCGCAATGCGATAGTA
1 CAAAATCGCAACGCGAT-TTT
* **
83173 CAAATTCGCATTGCGATTTT
1 CAAAATCGCAACGCGATTTT
* *
83193 CCAAAATCGCAACGCGAATAT
1 -CAAAATCGCAACGCGATTTT
*
83214 GAAAATCGCAACGCGA
1 CAAAATCGCAACGCGA
83230 ACACATAAAT
Statistics
Matches: 104, Mismatches: 29, Indels: 11
0.72 0.20 0.08
Matches are distributed among these distances:
19 16 0.15
20 41 0.39
21 47 0.45
ACGTcount: A:0.39, C:0.25, G:0.17, T:0.19
Consensus pattern (20 bp):
CAAAATCGCAACGCGATTTT
Found at i:83258 original size:20 final size:20
Alignment explanation
Indices: 83196--83425 Score: 232
Period size: 20 Copynumber: 11.5 Consensus size: 20
83186 CGATTTTCCA
* ** *
83196 AAATCGCAACGCGAATATGA
1 AAATCGCAACGCGTATCCGT
* *
83216 AAATCGCAACGCG-AACACAT
1 AAATCGCAACGCGTATC-CGT
83236 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
83256 AAATCGCAACGTGTATCCGT
1 AAATCGCAACGCGTATCCGT
**
83276 AAATCGCAACGCGTATGGGT
1 AAATCGCAACGCGTATCCGT
*
83296 AAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
83316 ATATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
83336 AAATCGCAACG-ATAATCCGT
1 AAATCGCAACGCGT-ATCCGT
* * *
83356 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGCGTATCCGT
*
83376 AAATCGCAACG-ATAATCCGT
1 AAATCGCAACGCGT-ATCCGT
* * *
83396 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGCGTATCCGT
*
83416 AAATCACAAC
1 AAATCGCAAC
83426 ACTGAAATTT
Statistics
Matches: 176, Mismatches: 28, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
19 2 0.01
20 172 0.98
21 2 0.01
ACGTcount: A:0.37, C:0.25, G:0.19, T:0.20
Consensus pattern (20 bp):
AAATCGCAACGCGTATCCGT
Found at i:84145 original size:24 final size:24
Alignment explanation
Indices: 84106--84152 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
84096 AAATTTGGTC
84106 TTGGTCAATATCCGGACTTTGATA
1 TTGGTCAATATCCGGACTTTGATA
*
84130 TTGGTCAATA-CACGGATTTTGAT
1 TTGGTCAATATC-CGGACTTTGAT
84153 GATGTTTCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (24 bp):
TTGGTCAATATCCGGACTTTGATA
Found at i:84344 original size:12 final size:12
Alignment explanation
Indices: 84327--84351 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
84317 ATATAATCCT
84327 GAAGAAGAAAAA
1 GAAGAAGAAAAA
84339 GAAGAAGAAAAA
1 GAAGAAGAAAAA
84351 G
1 G
84352 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:86685 original size:33 final size:34
Alignment explanation
Indices: 86634--86902 Score: 219
Period size: 33 Copynumber: 7.7 Consensus size: 34
86624 CGGAAATTAC
* *
86634 AATCGCAACGA-GAGAATCGCAATGCGAAATGAA
1 AATCCCAACGATGAAAATCGCAATGCGAAATGAA
86667 AATCCCAAC-ATGAAAATCGCAATGCGGAAATGAA
1 AATCCCAACGATGAAAATCGCAATGC-GAAATGAA
* *
86701 AATCGCAACGA-GAGAATCGCAATGCGAAATGAA
1 AATCCCAACGATGAAAATCGCAATGCGAAATGAA
* * * *
86734 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCG-C
1 AATCCCAA--CG--ATGAAAATCGCAATGCGA-AAT-GAA
* *
86773 AATGCGAA--ATGAAAATCGCAATGCGAAATGAA
1 AATCCCAACGATGAAAATCGCAATGCGAAATGAA
* *
86805 AATCGCAATGCAAAATGAAAATCGCAATGCGAAATGAA
1 AATCCCAA--C--GATGAAAATCGCAATGCGAAATGAA
* *
86843 AATCGCAACGA-GAGAATCGCAATGCGAAATGAA
1 AATCCCAACGATGAAAATCGCAATGCGAAATGAA
*
86876 AATCGCAATGCGAAATGAAAATCGCAA
1 AATCCCAA--CG--ATGAAAATCGCAA
86903 CGAGAGAATC
Statistics
Matches: 194, Mismatches: 20, Indels: 39
0.77 0.08 0.15
Matches are distributed among these distances:
31 1 0.01
32 9 0.05
33 82 0.42
34 30 0.15
35 5 0.03
36 1 0.01
37 2 0.01
38 55 0.28
39 8 0.04
40 1 0.01
ACGTcount: A:0.47, C:0.18, G:0.22, T:0.14
Consensus pattern (34 bp):
AATCCCAACGATGAAAATCGCAATGCGAAATGAA
Found at i:86739 original size:19 final size:19
Alignment explanation
Indices: 86648--86902 Score: 316
Period size: 19 Copynumber: 14.4 Consensus size: 19
86638 GCAACGAGAG
86648 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
86667 AATCCCAA--C---ATGAA
1 AATCGCAATGCGAAATGAA
86681 AATCGCAATGCGGAAATGAA
1 AATCGCAATGC-GAAATGAA
*
86701 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
86715 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
86734 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
86753 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
86767 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
86786 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
86805 AATCGCAATGCAAAATGAA
1 AATCGCAATGCGAAATGAA
86824 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
86843 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
86857 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
86876 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
86895 AATCGCAA
1 AATCGCAA
86903 CGAGAGAATC
Statistics
Matches: 205, Mismatches: 10, Indels: 42
0.80 0.04 0.16
Matches are distributed among these distances:
14 42 0.20
15 3 0.01
16 7 0.03
17 6 0.03
18 4 0.02
19 130 0.63
20 13 0.06
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.14
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:86761 original size:52 final size:52
Alignment explanation
Indices: 86676--86902 Score: 289
Period size: 52 Copynumber: 4.2 Consensus size: 52
86666 AAATCCCAAC
86676 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
86729 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
* *
86781 ATGAAAATCGCAATGCGAAATGAAAATCGCAATGCAAAATGAAAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAA--C--GA-GAGAATCGCAATGCGAA
* * * * *
86838 ATGAAAATCGCAACGAGAGAATCG-CAATGCGAAATGA-A-AATCGCAATGCGAA
1 ATGAAAATCGCAATGCGA-AAT-GAAAAT-CGCAACGAGAGAATCGCAATGCGAA
86890 ATGAAAATCGCAA
1 ATGAAAATCGCAA
86903 CGAGAGAATC
Statistics
Matches: 158, Mismatches: 8, Indels: 17
0.86 0.04 0.09
Matches are distributed among these distances:
52 95 0.60
53 17 0.11
54 1 0.01
55 1 0.01
56 1 0.01
57 32 0.20
58 6 0.04
59 5 0.03
ACGTcount: A:0.47, C:0.17, G:0.22, T:0.14
Consensus pattern (52 bp):
ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
Found at i:86840 original size:90 final size:90
Alignment explanation
Indices: 86648--86902 Score: 414
Period size: 90 Copynumber: 2.9 Consensus size: 90
86638 GCAACGAGAG
* *
86648 AATCGCAATGCGAAATGAAAATCCCAAC-ATGAAAATCGCAATGCGGAAATGAAAATCGCAA--C
1 AATCGCAATGCGAAATGAAAATCGCAACGA-GAGAATCGCAATGC-GAAATGAAAATCGCAATGC
* *
86710 G--A-GAGAATCGCAATGCGAAATGAA
64 GAAATGAAAATCGCAATGCAAAATGAA
86734 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGA
1 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGA
86799 AATGAAAATCGCAATGCAAAATGAA
66 AATGAAAATCGCAATGCAAAATGAA
86824 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGA
1 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGA
86889 AATGAAAATCGCAA
66 AATGAAAATCGCAA
86903 CGAGAGAATC
Statistics
Matches: 159, Mismatches: 4, Indels: 8
0.93 0.02 0.05
Matches are distributed among these distances:
85 16 0.10
86 40 0.25
87 3 0.02
89 1 0.01
90 99 0.62
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.14
Consensus pattern (90 bp):
AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGA
AATGAAAATCGCAATGCAAAATGAA
Found at i:86940 original size:52 final size:52
Alignment explanation
Indices: 86634--86924 Score: 282
Period size: 52 Copynumber: 5.6 Consensus size: 52
86624 CGGAAATTAC
*
86634 AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCCCAA--C---ATGAA
1 AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
* * *
86681 AATCGCAATGCG-GA-AAT-GAAAAT-CGCAACGAGAGAATCGCAATGCGAAATGAA
1 AATCGCAA--CGAGAGAATCG-CAATGCGAAATGA-A-AATCGCAATGCGAAATGAA
* * * * *
86734 AATCGCAATGCGA-AAT-GAAAAT-CGCAACGAGAGAATCGCAATGCGAAATGAA
1 AATCGCAACGAGAGAATCG-CAATGCGAAATGA-A-AATCGCAATGCGAAATGAA
* *
86786 AATCGCAATGCGAAATGAAAATCGCAATGCAAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAA--CG--A-GAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
86843 AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
86895 AATCGCAACGAGAGAATCGCAATGCGAAAT
1 AATCGCAACGAGAGAATCGCAATGCGAAAT
86925 TATAAACGCA
Statistics
Matches: 212, Mismatches: 13, Indels: 33
0.82 0.05 0.13
Matches are distributed among these distances:
46 7 0.03
47 15 0.07
48 9 0.04
49 2 0.01
50 1 0.00
51 1 0.00
52 118 0.56
53 14 0.07
54 1 0.00
55 2 0.01
57 29 0.14
58 7 0.03
59 6 0.03
ACGTcount: A:0.46, C:0.18, G:0.22, T:0.14
Consensus pattern (52 bp):
AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
Found at i:86940 original size:142 final size:143
Alignment explanation
Indices: 86648--86924 Score: 503
Period size: 142 Copynumber: 2.0 Consensus size: 143
86638 GCAACGAGAG
*
86648 AATCGCAATGCGAAATGAAAATC-C----CAACATGAAAATCGCAATGCGGAAATGAAAATCGCA
1 AATCGCAATGCGAAATGAAAATCGCAATGCAAAATGAAAATCGCAATGCGGAAATGAAAATCGCA
86708 ACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGC
66 ACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGC
86773 AATGCGAAATGAA
131 AATGCGAAATGAA
86786 AATCGCAATGCGAAATGAAAATCGCAATGCAAAATGAAAATCGCAATGC-GAAATGAAAATCGCA
1 AATCGCAATGCGAAATGAAAATCGCAATGCAAAATGAAAATCGCAATGCGGAAATGAAAATCGCA
86850 ACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGC
66 ACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGC
86915 AATGCGAAAT
131 AATGCGAAAT
86925 TATAAACGCA
Statistics
Matches: 133, Mismatches: 1, Indels: 6
0.95 0.01 0.04
Matches are distributed among these distances:
138 23 0.17
139 1 0.01
142 90 0.68
143 19 0.14
ACGTcount: A:0.47, C:0.18, G:0.22, T:0.14
Consensus pattern (143 bp):
AATCGCAATGCGAAATGAAAATCGCAATGCAAAATGAAAATCGCAATGCGGAAATGAAAATCGCA
ACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGC
AATGCGAAATGAA
Found at i:86989 original size:53 final size:53
Alignment explanation
Indices: 86931--87047 Score: 234
Period size: 53 Copynumber: 2.2 Consensus size: 53
86921 AAATTATAAA
86931 CGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATTT
1 CGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATTT
86984 CGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATTT
1 CGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATTT
87037 CGCATTGCGAT
1 CGCATTGCGAT
87048 AGTCATTTTT
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 64 1.00
ACGTcount: A:0.14, C:0.25, G:0.18, T:0.44
Consensus pattern (53 bp):
CGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATTT
Found at i:87055 original size:19 final size:19
Alignment explanation
Indices: 86949--87047 Score: 136
Period size: 20 Copynumber: 5.4 Consensus size: 19
86939 GATTCTCTCG
86949 TTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
86969 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
86988 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
87002 TTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
87022 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
87041 TTGCGAT
1 TTGCGAT
87048 AGTCATTTTT
Statistics
Matches: 71, Mismatches: 2, Indels: 13
0.83 0.02 0.15
Matches are distributed among these distances:
14 6 0.08
16 7 0.10
17 5 0.07
18 2 0.03
19 21 0.30
20 30 0.42
ACGTcount: A:0.14, C:0.23, G:0.17, T:0.45
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:87173 original size:14 final size:13
Alignment explanation
Indices: 87145--87202 Score: 55
Period size: 14 Copynumber: 4.4 Consensus size: 13
87135 TTATGTTCGC
*
87145 ATCAATTACACAA
1 ATCAATTATACAA
87158 ATCAACTTATACAA
1 ATCAA-TTATACAA
* *
87172 ATCATCTTTTACAA
1 ATCA-ATTATACAA
*
87186 ATCAATTAAAC-A
1 ATCAATTATACAA
87198 ATCAA
1 ATCAA
87203 AAAATAAGCA
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
12 6 0.16
13 9 0.24
14 22 0.59
ACGTcount: A:0.50, C:0.21, G:0.00, T:0.29
Consensus pattern (13 bp):
ATCAATTATACAA
Found at i:89156 original size:19 final size:19
Alignment explanation
Indices: 89111--89225 Score: 106
Period size: 19 Copynumber: 6.6 Consensus size: 19
89101 TAGTTTACTT
* **
89111 TCGCAACACGAAACCAAAA
1 TCGCAACGCGAAATGAAAA
89130 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
89149 TCGCAA--CGACA-G--AA
1 TCGCAACGCGAAATGAAAA
*
89163 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
89182 TCGCAA--CGAAA-G--AA
1 TCGCAACGCGAAATGAAAA
89196 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
89215 TCGCAATGCGA
1 TCGCAACGCGA
89226 TTTTGGTTTC
Statistics
Matches: 80, Mismatches: 6, Indels: 20
0.75 0.06 0.19
Matches are distributed among these distances:
14 16 0.20
16 11 0.14
17 11 0.14
19 42 0.52
ACGTcount: A:0.46, C:0.23, G:0.20, T:0.10
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:89166 original size:14 final size:14
Alignment explanation
Indices: 89147--89203 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
89137 GCGAAATGAA
*
89147 AATCGCAACGACAG
1 AATCGCAACGAAAG
89161 AATCGCAATGCGAAATG
1 AATCGCAA--CGAAA-G
89178 AAAATCGCAACGAAAG
1 --AATCGCAACGAAAG
89194 AATCGCAACG
1 AATCGCAACG
89204 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 18 0.49
16 5 0.14
17 6 0.16
19 8 0.22
ACGTcount: A:0.46, C:0.23, G:0.21, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAAAG
Found at i:89174 original size:33 final size:33
Alignment explanation
Indices: 89128--89220 Score: 168
Period size: 33 Copynumber: 2.8 Consensus size: 33
89118 ACGAAACCAA
*
89128 AATCGCAACGCGAAATGAAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
*
89161 AATCGCAATGCGAAATGAAAATCGCAACGAAAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
89194 AATCGCAACGCGAAATGAAAATCGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
89221 TGCGATTTTG
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.47, C:0.22, G:0.20, T:0.11
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAAAG
Found at i:89243 original size:19 final size:19
Alignment explanation
Indices: 89221--89349 Score: 125
Period size: 19 Copynumber: 7.3 Consensus size: 19
89211 AAAATCGCAA
89221 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
89240 TGCGATCTT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
89254 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
89273 TGCGATTAT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
**
89287 TGCGATTTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
89306 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
* *
89325 TGCGATTTTAAGTTTCGTGT
1 TGCGATTTT-GGTTTCGCGT
89345 TGCGA
1 TGCGA
89350 AAGTAAACTA
Statistics
Matches: 90, Mismatches: 9, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 22 0.24
15 1 0.01
16 2 0.02
17 2 0.02
18 2 0.02
19 48 0.53
20 13 0.14
ACGTcount: A:0.09, C:0.16, G:0.29, T:0.46
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:89263 original size:33 final size:33
Alignment explanation
Indices: 89221--89312 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 33
89211 AAAATCGCAA
89221 TGCGATTTTGGTTTCGCGTTGCGATCT-TGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGAT-TATGTCGT
89254 TGCGATTTTGGTTTCGCGTTGCGATTATGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTATGTCGT
**
89287 TGCGATTTTCATTTCGCGTTGCGATT
1 TGCGATTTTGGTTTCGCGTTGCGATT
89313 TTGGTTTCGC
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
32 1 0.02
33 55 0.98
ACGTcount: A:0.09, C:0.17, G:0.28, T:0.46
Consensus pattern (33 bp):
TGCGATTTTGGTTTCGCGTTGCGATTATGTCGT
Found at i:89596 original size:92 final size:93
Alignment explanation
Indices: 89397--89677 Score: 523
Period size: 92 Copynumber: 3.1 Consensus size: 93
89387 ATGGATTGCA
89397 TTAC-TTCAACCAAAAGACAAAACAAAGAC-AATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
*
89460 TAGCAGAATTGGCAGCAACCAAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
89488 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
89553 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
89581 TTACTTTC-ACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
*
89645 TAGCAGAATTGGCAGCAACCGAATAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
89673 TTACT
1 TTACT
89678 AAGCAATCTA
Statistics
Matches: 186, Mismatches: 2, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
91 4 0.02
92 113 0.61
93 69 0.37
ACGTcount: A:0.46, C:0.19, G:0.12, T:0.22
Consensus pattern (93 bp):
TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
TAGCAGAATTGGCAGCAACCGAACAAAT
Found at i:91397 original size:14 final size:14
Alignment explanation
Indices: 91378--91467 Score: 72
Period size: 14 Copynumber: 5.7 Consensus size: 14
91368 TTGAAATGAA
91378 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
91392 AATCGCAACGCGAAATGAC
1 AATCGCAA--CG--A-GAG
91411 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
91425 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
91444 AATCGCAACGAGAG
1 AATCGCAACGAGAG
91458 AATCGCAACG
1 AATCGCAACG
91468 CGAAATGAAA
Statistics
Matches: 62, Mismatches: 4, Indels: 20
0.72 0.05 0.23
Matches are distributed among these distances:
14 30 0.48
15 2 0.03
16 4 0.06
17 4 0.06
18 2 0.03
19 20 0.32
ACGTcount: A:0.43, C:0.23, G:0.24, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:91415 original size:33 final size:33
Alignment explanation
Indices: 91370--91484 Score: 221
Period size: 33 Copynumber: 3.5 Consensus size: 33
91360 TCTTTTGGTT
91370 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
*
91403 GAAATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
91436 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
91469 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
91485 TGCGATTTTG
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 80 1.00
ACGTcount: A:0.46, C:0.21, G:0.23, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:91416 original size:19 final size:19
Alignment explanation
Indices: 91392--91489 Score: 90
Period size: 19 Copynumber: 5.7 Consensus size: 19
91382 GCAACGAGAG
*
91392 AATCGCAACGCGAAATGAC
1 AATCGCAACGCGAAATGAA
*
91411 AATCGCAA--CG--A-GAG
1 AATCGCAACGCGAAATGAA
91425 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
*
91444 AATCGCAA--CG--A-GAG
1 AATCGCAACGCGAAATGAA
91458 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
*
91477 AATCGCAATGCGA
1 AATCGCAACGCGA
91490 TTTTGGTTTC
Statistics
Matches: 64, Mismatches: 5, Indels: 20
0.72 0.06 0.22
Matches are distributed among these distances:
14 20 0.31
15 2 0.03
16 4 0.06
17 4 0.06
18 2 0.03
19 32 0.50
ACGTcount: A:0.44, C:0.22, G:0.23, T:0.10
Consensus pattern (19 bp):
AATCGCAACGCGAAATGAA
Found at i:91520 original size:14 final size:14
Alignment explanation
Indices: 91501--91557 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 14
91491 TTTGGTTTCG
91501 CGTTGCGATTATCT
1 CGTTGCGATTATCT
*
91515 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TT-A--TCT
*
91534 CGTTGCGATTCTCT
1 CGTTGCGATTATCT
91548 CGTTGCGATT
1 CGTTGCGATT
91558 TTCATTTCTC
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
14 20 0.57
16 2 0.06
17 3 0.09
19 10 0.29
ACGTcount: A:0.11, C:0.23, G:0.23, T:0.44
Consensus pattern (14 bp):
CGTTGCGATTATCT
Found at i:91533 original size:33 final size:33
Alignment explanation
Indices: 91485--91565 Score: 135
Period size: 33 Copynumber: 2.5 Consensus size: 33
91475 AAAATCGCAA
**
91485 TGCGATTTTGGTTTCGCGTTGCGATTATCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTATCTCGT
*
91518 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTATCTCGT
91551 TGCGATTTTCATTTC
1 TGCGATTTTCATTTC
91566 TCTCGTTGCG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.10, C:0.21, G:0.22, T:0.47
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCGTTGCGATTATCTCGT
Found at i:91588 original size:20 final size:20
Alignment explanation
Indices: 91541--91596 Score: 76
Period size: 21 Copynumber: 2.8 Consensus size: 20
91531 TCGCGTTGCG
***
91541 ATTCTCTCGTTGCGATTTTC
1 ATTCTCTCGTTGCGACAGTC
91561 ATTTCTCTCGTTGCGACAGTC
1 A-TTCTCTCGTTGCGACAGTC
91582 ATTCTCTCGTTGCGA
1 ATTCTCTCGTTGCGA
91597 TTTCATTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
20 15 0.47
21 17 0.53
ACGTcount: A:0.12, C:0.27, G:0.18, T:0.43
Consensus pattern (20 bp):
ATTCTCTCGTTGCGACAGTC
Found at i:91618 original size:20 final size:21
Alignment explanation
Indices: 91542--91616 Score: 100
Period size: 20 Copynumber: 3.7 Consensus size: 21
91532 CGCGTTGCGA
*
91542 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGACTTTCAT
**
91563 TTCTCTCGTTGCGACAGTCA-
1 TTCTCTCGTTGCGACTTTCAT
91583 TTCTCTCGTTGCGA-TTTCAT
1 TTCTCTCGTTGCGACTTTCAT
*
91603 TTATCTCGTTGCGA
1 TTCTCTCGTTGCGA
91617 TTCTTCTGCA
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
19 3 0.06
20 27 0.57
21 17 0.36
ACGTcount: A:0.12, C:0.25, G:0.17, T:0.45
Consensus pattern (21 bp):
TTCTCTCGTTGCGACTTTCAT
Found at i:91738 original size:33 final size:33
Alignment explanation
Indices: 91696--91766 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
91686 AATACTAACT
*
91696 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
* *
91729 TGAAAATCGCAACGACAGAATCGTAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
91762 TGAAA
1 TGAAA
91767 TCTTAGTGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.48, C:0.18, G:0.23, T:0.11
Consensus pattern (33 bp):
TGAAAATCGCAACGACAGAATAGCAACGCGAAA
Found at i:92000 original size:22 final size:22
Alignment explanation
Indices: 91948--92002 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
91938 TGGTTGTGAG
**
91948 GGATTTCGCCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
**
91970 GGAAATCTTCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
91992 GGATTTCTTCG
1 GGATTTCTTCG
92003 CCGTAGAGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.20, C:0.16, G:0.40, T:0.24
Consensus pattern (22 bp):
GGATTTCTTCGGAGATGGGGAC
Found at i:92342 original size:20 final size:20
Alignment explanation
Indices: 92149--92341 Score: 219
Period size: 20 Copynumber: 9.7 Consensus size: 20
92139 CTTTAAATAT
*
92149 CGCGTTGCGATTTACGGATT
1 CGCGTTGCGATTTACGGATA
* *
92169 CTCGTTGCGATTTACAGATTA
1 CGCGTTGCGATTTACGGA-TA
*
92190 -TCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
92209 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
* **
92229 CGCATTGCGATTTACCCATA
1 CGCGTTGCGATTTACGGATA
92249 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
92269 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
92289 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
92309 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
92329 CGCGTTGCGATTT
1 CGCGTTGCGATTT
92342 TGGAAAATCG
Statistics
Matches: 148, Mismatches: 21, Indels: 8
0.84 0.12 0.05
Matches are distributed among these distances:
19 2 0.01
20 144 0.97
21 2 0.01
ACGTcount: A:0.19, C:0.20, G:0.25, T:0.35
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:92358 original size:21 final size:21
Alignment explanation
Indices: 92328--92410 Score: 78
Period size: 21 Copynumber: 4.0 Consensus size: 21
92318 ATTTTCATAT
*
92328 TCGCGTTGCGATTTTGGAAAA
1 TCGCATTGCGATTTTGGAAAA
* * * **
92349 TCGCAATGCGAATTTGTACTA
1 TCGCATTGCGATTTTGGAAAA
*
92370 TCGCATTGCGATTTT-CAAGAA
1 TCGCATTGCGATTTTGGAA-AA
*
92391 TCGCGTTGCGATTTTGGAAA
1 TCGCATTGCGATTTTGGAAA
92411 CTGATTTGCG
Statistics
Matches: 47, Mismatches: 13, Indels: 4
0.73 0.20 0.06
Matches are distributed among these distances:
20 1 0.02
21 44 0.94
22 2 0.04
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTTGGAAAA
Found at i:92401 original size:42 final size:43
Alignment explanation
Indices: 92308--92406 Score: 100
Period size: 42 Copynumber: 2.4 Consensus size: 43
92298 ATTTATGTGT
* *
92308 TCGCGTTGCG-ATTT-TCATATTCGCGTTGCGATTTTGGAAAA
1 TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTTTGCAAAA
**
92349 TCGCAATGCGAATTTGT-ACTA-TCGCATTGCGATTTT-CAAGAA
1 TCGCGTTGCGAATTTGTCA-TATTCGCATTGCGATTTTGCAA-AA
*
92391 TCGCGTTGCGATTTTG
1 TCGCGTTGCGAATTTG
92407 GAAACTGATT
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
41 10 0.21
42 34 0.72
43 3 0.06
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.37
Consensus pattern (43 bp):
TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTTTGCAAAA
Found at i:94499 original size:13 final size:13
Alignment explanation
Indices: 94483--94512 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
94473 CCCCTTGGCT
94483 CCGCCCCTCGTAA
1 CCGCCCCTCGTAA
94496 CCGCCCCTCGTAA
1 CCGCCCCTCGTAA
94509 CCGC
1 CCGC
94513 TCCGGTAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.13, C:0.57, G:0.17, T:0.13
Consensus pattern (13 bp):
CCGCCCCTCGTAA
Found at i:106831 original size:518 final size:518
Alignment explanation
Indices: 105854--107415 Score: 2941
Period size: 518 Copynumber: 3.0 Consensus size: 518
105844 TTGAGTTGTT
105854 GTGTTGGGGATATCATCAGTCAATCCCAATTTGCTTTTATTCCGGGGAGACAGTTATTGGATTGC
1 GTGTTGGGGATATCATCAGTCAATCCCAATTTGCTTTTATTCCGGGGAGACAGTTATTGGATTGC
* *
105919 TCCTTCATTGCGAACGAAGGAATTGATTATTTGAGAAAACATGGGTTGTAAGGGGTTGTTCTAAA
66 TCCTTCATTGCGAACGAAGGAATTGATTATTGGAGAAAACAGGGGTTGTAAGGGGTTGTTCTAAA
105984 AGTTGACTTTCGTAGAGCATACGACTCTGTGGAATGGCCTATTTTATTTAGAGCAATGTCAGAGA
131 AGTTGACTTTCGTAGAGCATACGACTCTGTGGAATGGCCTATTTTATTTAGAGCAATGTCAGAGA
106049 TGGGTTTTGGATATAGATGGTCCTCGTGGATTACTCAATGTCTGTTTACAGCCTCAATTTCGATA
196 TGGGTTTTGGATATAGATGGTCCTCGTGGATTACTCAATGTCTGTTTACAGCCTCAATTTCGATA
*
106114 CTTGTTAATGGGTCTCCTTCTGAGGAGTTTCCTATGCACAAAGGTCTAAGACAAGGCTGCAGTCT
261 CTTGTCAATGGGTCTCCTTCTGAGGAGTTTCCTATGCACAAAGGTCTAAGACAAGGCTGCAGTCT
* * *
106179 AACTCCTTTACTGTTTAACATTGTAGGTGAGATGCTACACTTGATGTTGTCTAAAGCATTTGAAA
326 ATCTCCTTTACTGTTTAACATTGTAGGCGAGATGCTACACTTGATGTTGTCTAAAGCAGTTGAAA
*
106244 GGGGTTTATTTCATGGTTTTGTTATTGGGAATTCTGAAAATTCTACTAGGTTGTCTCGTCTACAG
391 GGGGTTTATTTCATGGTTTTGTTATTGGGAATTCTGAAAATTCTACTAGGTTGTCTCATCTACAG
106309 TTCGCTGATGACCTAATCATCTTTTGCCAAGCCTCTATTAATCAGATCAAGAATGTTAAAAGG
456 TTCGCTGATGACCTAATCATCTTTTGCCAAGCCTCTATTAATCAGATCAAGAATGTTAAAAGG
106372 GTGTTGGGGATATCATCAGTCAATCCCAATTTGCTTTTATTCCGGGGAGACAGTTATTGGATTGC
1 GTGTTGGGGATATCATCAGTCAATCCCAATTTGCTTTTATTCCGGGGAGACAGTTATTGGATTGC
106437 TCCTTCATTGCGAACGAAGGAATTGATTATTGGAGAAAACAGGGGTTGTAAGGGGTTGTTCTAAA
66 TCCTTCATTGCGAACGAAGGAATTGATTATTGGAGAAAACAGGGGTTGTAAGGGGTTGTTCTAAA
*
106502 AGTTGACTTTCGTAGAGCATACGACTTTGTGGAATGGCCTATTTTATTTAGAGCAATGTCAGAGA
131 AGTTGACTTTCGTAGAGCATACGACTCTGTGGAATGGCCTATTTTATTTAGAGCAATGTCAGAGA
*
106567 TGGTTTTTGGATATAGATGGTCCTCGTGGATTACTCAATGTCTGTTTACAGCCTCAATTTCGATA
196 TGGGTTTTGGATATAGATGGTCCTCGTGGATTACTCAATGTCTGTTTACAGCCTCAATTTCGATA
106632 CTTGTCAATGGGTCTCCTTCTGAGGAGTTTCCTATGCACAAAGGTCTAAGACAAGGCTGCAGTCT
261 CTTGTCAATGGGTCTCCTTCTGAGGAGTTTCCTATGCACAAAGGTCTAAGACAAGGCTGCAGTCT
*
106697 ATCTCCTTTACTGTTTAACATTGTAGGCGAGATGCTACACTTGATGTTGTCTAAAGTAGTTGAAA
326 ATCTCCTTTACTGTTTAACATTGTAGGCGAGATGCTACACTTGATGTTGTCTAAAGCAGTTGAAA
106762 GGGGTTTATTTCATGGTTTTGTTATTGGGAATTCTGAAAATTCTACTAGGTTGTCTCATCTACAG
391 GGGGTTTATTTCATGGTTTTGTTATTGGGAATTCTGAAAATTCTACTAGGTTGTCTCATCTACAG
* *
106827 TTCGCTGATGACTTAATCATCTTTTGCCAAGCCTCTATTAATCAGATCAAGAATGCTAAAAGG
456 TTCGCTGATGACCTAATCATCTTTTGCCAAGCCTCTATTAATCAGATCAAGAATGTTAAAAGG
* *
106890 GTGTTGGGGATATCATTAGTCAATCCCAATTTGCTTTTATTTCGGGGAGACAGTTATTGGATTGC
1 GTGTTGGGGATATCATCAGTCAATCCCAATTTGCTTTTATTCCGGGGAGACAGTTATTGGATTGC
*
106955 TCCTTCATTGCGAACGAAGGAATTGATTATTGGAGAAAACAGGGGTTGCAAGGGGTTGTTCTAAA
66 TCCTTCATTGCGAACGAAGGAATTGATTATTGGAGAAAACAGGGGTTGTAAGGGGTTGTTCTAAA
107020 AGTTGACTTTCGTAGAGCATACGACTCTGTGGAATGGCCTATTTTATTTAGAGCAATGTCAGAGA
131 AGTTGACTTTCGTAGAGCATACGACTCTGTGGAATGGCCTATTTTATTTAGAGCAATGTCAGAGA
*
107085 TGGGTTTTGGATATAGATGGTCCTCATGGATTACTCAATGTCTGTTTACAGCCTCAATTTCGATA
196 TGGGTTTTGGATATAGATGGTCCTCGTGGATTACTCAATGTCTGTTTACAGCCTCAATTTCGATA
107150 CTTGTCAATGGGTCTCCTTCTGAGGAGTTTCCTATGCACAAAGGTCTAAGACAAGGCTGCAGTCT
261 CTTGTCAATGGGTCTCCTTCTGAGGAGTTTCCTATGCACAAAGGTCTAAGACAAGGCTGCAGTCT
*
107215 ATCTCCTTTACTGTTTAACATTGTATGCGAGATGCTACACTTGATGTTGTCTAAAGCAGTTGAAA
326 ATCTCCTTTACTGTTTAACATTGTAGGCGAGATGCTACACTTGATGTTGTCTAAAGCAGTTGAAA
107280 GGGGTTTATTTCATGGTTTTGTTATT-GGAATTCTGAAAATTCTACTAGGTTGTCTCATCTACAG
391 GGGGTTTATTTCATGGTTTTGTTATTGGGAATTCTGAAAATTCTACTAGGTTGTCTCATCTACAG
107344 TTCGCTGATGACCTAATCATCTTTTGCCAAG-CTCTATT-ATCAGATCAAGAATGTTAAAAGG
456 TTCGCTGATGACCTAATCATCTTTTGCCAAGCCTCTATTAATCAGATCAAGAATGTTAAAAGG
*
107405 GTGTTGAGGAT
1 GTGTTGGGGAT
107416 TTTTAGCATT
Statistics
Matches: 1021, Mismatches: 23, Indels: 3
0.98 0.02 0.00
Matches are distributed among these distances:
515 32 0.03
516 7 0.01
517 68 0.07
518 914 0.90
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (518 bp):
GTGTTGGGGATATCATCAGTCAATCCCAATTTGCTTTTATTCCGGGGAGACAGTTATTGGATTGC
TCCTTCATTGCGAACGAAGGAATTGATTATTGGAGAAAACAGGGGTTGTAAGGGGTTGTTCTAAA
AGTTGACTTTCGTAGAGCATACGACTCTGTGGAATGGCCTATTTTATTTAGAGCAATGTCAGAGA
TGGGTTTTGGATATAGATGGTCCTCGTGGATTACTCAATGTCTGTTTACAGCCTCAATTTCGATA
CTTGTCAATGGGTCTCCTTCTGAGGAGTTTCCTATGCACAAAGGTCTAAGACAAGGCTGCAGTCT
ATCTCCTTTACTGTTTAACATTGTAGGCGAGATGCTACACTTGATGTTGTCTAAAGCAGTTGAAA
GGGGTTTATTTCATGGTTTTGTTATTGGGAATTCTGAAAATTCTACTAGGTTGTCTCATCTACAG
TTCGCTGATGACCTAATCATCTTTTGCCAAGCCTCTATTAATCAGATCAAGAATGTTAAAAGG
Done.