Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002512.1 Hibiscus syriacus cultivar Beakdansim tig00005112_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93130

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5723--5761
19
2.0
19
85
14
53
69
5
5
20
1.28
9330--9390
29
2.1
29
84
6
79
45
14
18
21
1.84
9631--9676
24
1.9
24
90
0
74
43
6
4
45
1.49
24058--24144
23
3.8
23
84
0
111
29
22
25
21
1.99
24356--24425
30
2.3
30
87
0
104
35
22
2
38
1.69
24455--24480
13
2.0
13
100
0
52
53
23
0
23
1.46
28189--28267
23
3.8
21
79
9
72
22
35
24
17
1.95
32159--32539
61
6.2
61
73
10
310
22
18
23
35
1.96
32239--32539
122
2.4
124
91
4
491
22
18
23
35
1.96
32239--32539
42
7.3
42
91
2
470
22
18
23
35
1.96
33266--33528
42
6.3
42
94
0
449
35
24
19
20
1.96
33333--33571
61
3.8
60
70
16
168
35
24
19
20
1.96
37013--37102
45
2.0
47
93
4
157
30
7
22
40
1.82
46745--46787
10
4.1
10
78
21
52
76
0
11
11
1.02
46746--46774
13
2.1
14
93
6
51
72
0
13
13
1.13
46760--46900
8
16.1
9
70
20
72
74
0
15
9
1.10
46760--46906
17
8.5
17
75
20
80
74
0
15
8
1.09
46745--46795
22
2.2
23
86
6
68
74
0
11
13
1.07
46763--46906
25
5.6
25
69
19
84
75
0
15
8
1.08
46807--46899
27
3.6
26
78
15
95
76
0
16
7
1.00
46806--46906
9
11.6
8
69
22
62
77
0
15
6
0.98
46827--46915
31
3.1
27
71
25
67
77
0
14
7
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48274--48736
55
8.6
54
86
7
480
27
17
26
28
1.97
48274--48758
106
4.5
108
82
7
506
27
16
26
29
1.97
54712--54794
28
2.9
29
82
8
100
26
9
10
53
1.67
63832--63892
23
2.7
23
94
0
104
27
27
24
19
1.99
63908--64125
103
2.1
103
94
0
391
37
23
12
26
1.91
68913--68965
23
2.3
23
86
0
79
26
28
24
20
1.99
68981--69198
103
2.1
103
96
0
400
36
23
13
26
1.92
70737--70781
21
2.1
21
87
0
63
15
24
28
31
1.96
75318--76800
742
2.0
741
96
0
2754
31
17
13
36
1.89
76979--77005
2
13.5
2
100
0
54
48
0
0
51
1.00
78438--78463
2
13.0
2
100
0
52
50
0
0
50
1.00
81285--81318
18
1.9
17
88
5
50
35
2
2
58
1.28
86385--86428
18
2.4
19
92
3
72
65
0
29
4
1.12
86409--86438
16
1.9
16
93
6
53
60
0
30
10
1.30

Tables:   1

The End!