genome.fa.s2514.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002514.1 Hibiscus syriacus cultivar Beakdansim tig00005115_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  206048

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1698--1744	24	2.0	24	83	8	60	57	12	2	27	1.47
6037--6238	82	2.4	83	78	4	212	36	9	16	37	1.81
6445--6597	82	1.9	82	80	5	184	39	11	18	30	1.86
32611--32646	16	2.2	16	95	0	63	36	8	33	22	1.84
39017--39076	23	2.9	20	87	9	77	21	33	26	18	1.96
39059--39098	21	1.9	21	89	0	62	25	40	25	10	1.86
41018--41068	9	6.2	8	76	19	52	13	0	27	58	1.36
41020--41063	17	2.6	17	85	7	63	13	0	29	56	1.38
44053--44088	2	18.0	2	100	0	72	50	0	0	50	1.00
45332--45357	2	13.0	2	100	0	52	50	0	0	50	1.00
48097--48207	31	3.6	31	81	4	134	18	30	27	24	1.97
57029--57076	22	2.1	22	88	3	69	66	0	2	31	1.03
59652--59692	18	2.3	18	95	0	73	19	51	19	9	1.74
69453--69500	22	2.3	22	79	17	57	50	4	0	45	1.21
73804--73857	24	2.3	22	78	15	54	33	5	0	61	1.19
74997--75047	21	2.5	20	81	9	57	60	11	5	21	1.52
76971--77022	22	2.4	22	96	0	95	28	9	34	26	1.88
77942--78156	118	1.8	120	89	4	346	40	9	7	41	1.67
78290--78332	14	3.2	14	80	9	54	46	0	0	53	1.00
88217--88241	6	4.2	6	100	0	50	16	0	0	84	0.63
88217--88257	14	3.1	14	86	6	50	17	0	2	80	0.82
90798--90838	21	2.0	21	95	0	73	41	17	0	41	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91370--91420	23	2.2	23	82	0	66	23	11	17	47	1.81
94171--94259	33	2.7	33	87	0	124	25	16	35	21	1.94
96144--96190	3	15.0	3	91	8	76	36	0	0	63	0.94
99441--99534	21	4.5	21	82	7	111	43	18	15	22	1.87
101285--101352	21	3.3	21	97	2	129	8	13	10	67	1.41
102048--102119	20	3.7	19	72	24	62	77	0	15	6	0.96
102043--102085	10	4.3	10	77	11	52	81	0	16	2	0.79
103370--103612	124	2.0	125	86	4	348	34	17	26	22	1.96
105320--106269	54	17.6	54	91	0	1501	33	19	26	21	1.97
106218--106713	55	9.2	55	83	6	479	30	15	25	28	1.96
106879--106928	3	16.0	3	91	8	82	36	0	0	64	0.94
107677--107721	21	2.1	21	87	0	63	31	28	24	15	1.96
108306--108340	18	1.9	18	88	11	54	54	5	17	22	1.64
109238--109541	149	2.0	149	94	1	547	27	16	19	36	1.93
109520--109564	23	2.0	23	86	0	63	20	24	28	26	1.99
111055--111099	23	2.0	23	81	0	54	28	26	24	20	1.99
111078--111381	149	2.0	149	99	0	599	34	20	17	27	1.95
111834--111871	2	19.0	2	100	0	76	50	0	0	50	1.00
112820--112864	21	2.1	21	87	0	63	15	24	28	31	1.96
130721--130749	15	1.9	15	100	0	58	41	13	6	37	1.72
131287--131751	112	4.1	112	90	1	696	45	13	14	25	1.82
131624--132072	182	2.5	182	89	0	684	43	12	15	28	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135341--135376	2	18.5	2	94	5	65	50	0	0	50	1.00
136072--136106	17	2.2	15	90	10	52	31	0	2	65	1.07
136048--136106	23	2.6	23	76	15	59	28	0	3	67	1.06
138386--138473	33	2.6	33	83	7	106	21	2	12	63	1.39
143937--143967	14	2.2	14	94	0	53	58	25	12	3	1.50
143951--143995	12	3.9	12	91	5	58	60	13	8	17	1.58
143964--143995	12	2.7	12	100	0	64	59	9	9	21	1.57
145303--145476	87	2.0	87	88	0	258	20	20	10	48	1.78
152262--152286	2	12.5	2	100	0	50	48	0	0	52	1.00
154164--154215	22	2.3	23	80	9	63	50	5	1	42	1.37
158902--158936	2	17.5	2	100	0	70	48	0	0	51	1.00
159222--159250	14	2.0	15	93	6	51	31	0	0	68	0.89
159831--159883	19	2.8	18	86	11	70	24	1	0	73	0.93
164540--164583	15	3.2	14	90	9	65	81	0	18	0	0.68
164536--164584	6	8.5	6	76	14	50	81	0	18	0	0.69
164540--164592	14	3.5	15	87	7	56	81	0	18	0	0.70
164553--164592	13	3.0	13	88	3	53	85	0	15	0	0.61
166820--167084	83	3.2	83	95	1	460	27	13	21	36	1.92
169538--169658	22	5.5	22	87	0	179	33	12	12	41	1.80
170418--171054	113	5.6	113	92	2	955	38	14	19	27	1.90
173126--173154	2	14.5	2	100	0	58	48	0	0	51	1.00
173442--173470	14	2.0	15	93	6	51	31	0	0	68	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
175816--175852	2	18.5	2	100	0	74	48	0	0	51	1.00
180007--180050	16	2.6	17	75	7	54	43	0	2	54	1.12
183621--184362	106	7.0	106	90	1	1096	21	18	25	34	1.96
184371--184502	36	3.7	36	78	9	144	37	15	20	27	1.92
185256--185332	22	3.5	22	87	0	118	23	10	24	41	1.85
185936--185979	19	2.4	18	88	3	61	2	15	6	75	1.12
185945--185984	18	2.2	19	95	4	73	0	17	5	77	0.94
189280--189310	2	15.5	2	93	0	53	54	0	0	45	0.99
189728--189822	36	2.6	37	79	1	111	34	11	12	41	1.79
190360--190447	43	2.0	43	88	0	131	25	19	15	39	1.91
190629--190664	18	2.1	18	90	10	58	58	5	0	36	1.22
194596--194652	23	2.5	23	100	0	114	54	3	0	42	1.17

Tables:   1

The End!