genome.fa.s2515.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002515.1 Hibiscus syriacus cultivar Beakdansim tig00005116_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  150068

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1821--1858	17	2.2	17	100	0	76	13	23	44	18	1.85
1870--1947	10	8.1	10	74	17	58	26	29	26	16	1.97
1867--1934	29	2.4	28	85	2	100	25	29	30	14	1.95
1880--1964	29	3.0	28	83	10	84	30	29	25	14	1.95
1888--1967	20	4.1	19	80	6	88	30	28	25	16	1.96
3171--3241	22	3.3	22	72	16	76	47	2	1	47	1.25
3239--3301	20	3.0	20	80	11	65	52	3	1	42	1.27
3239--3302	22	3.2	19	79	14	67	53	3	1	42	1.26
38807--38858	18	2.8	18	82	5	68	61	0	1	36	1.07
39245--39272	2	14.0	2	100	0	56	50	0	0	50	1.00
39825--39857	9	3.8	9	84	8	50	24	0	0	75	0.80
39818--39853	16	2.3	16	95	4	65	27	0	0	72	0.85
40194--40235	3	14.0	3	84	0	57	64	0	35	0	0.94
41842--41870	2	14.5	2	100	0	58	51	0	0	48	1.00
42527--42988	179	2.6	175	80	8	476	25	14	17	43	1.86
45117--45149	17	1.9	17	93	0	57	63	0	0	36	0.95
50688--50886	105	1.9	105	85	2	274	28	23	13	34	1.93
55576--55767	105	1.8	105	81	2	242	27	25	15	31	1.96
58041--58233	104	1.8	105	80	5	230	25	25	15	33	1.95
68389--68450	20	3.0	20	75	11	63	12	24	38	24	1.90
68391--68445	21	2.7	21	80	8	60	12	20	43	23	1.86
72307--72528	117	1.9	117	80	5	261	28	14	9	47	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74231--74361	69	1.9	68	84	7	176	51	10	6	31	1.63
74792--74877	24	3.5	23	74	22	77	30	17	15	37	1.90
81299--81451	60	2.5	60	79	12	152	39	4	25	30	1.76
96910--97022	58	1.9	58	85	0	154	53	12	20	13	1.71
98015--98511	107	4.7	107	83	9	666	34	25	19	21	1.96
98015--98511	201	2.4	204	91	5	775	34	25	19	21	1.96
113945--114050	52	2.0	53	94	3	187	50	3	17	28	1.64
120329--120378	20	2.5	20	78	15	59	54	2	0	44	1.11
121928--121953	2	13.0	2	100	0	52	50	0	0	50	1.00
124338--124444	10	11.4	10	69	25	65	60	0	38	0	1.03
124337--124428	27	3.3	27	77	18	66	59	0	40	0	0.97
124292--124428	15	9.2	16	69	19	68	58	0	41	0	0.98
128652--129133	45	11.3	45	77	13	315	29	10	36	23	1.88
128652--128818	78	2.1	78	82	4	203	31	11	36	20	1.88
128845--129075	120	1.9	119	89	0	354	27	9	37	25	1.87
128806--129117	165	1.9	165	92	0	525	27	9	36	25	1.87
128965--129155	90	2.1	90	90	0	292	28	8	36	26	1.86
128965--129155	45	4.2	45	83	1	150	28	8	36	26	1.86
128761--129154	210	1.9	210	87	1	574	28	9	36	25	1.88
130478--130530	18	2.9	17	83	8	61	43	9	3	43	1.55
133121--133248	45	2.9	44	82	6	161	28	8	33	28	1.87
132978--133358	176	2.1	177	84	4	494	28	8	35	27	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
133060--133539	87	5.4	87	75	8	430	30	8	35	25	1.86
133211--133539	180	1.8	179	82	3	428	28	9	36	25	1.87
143326--143350	2	12.5	2	100	0	50	48	0	0	52	1.00
146884--146927	23	1.9	23	81	9	54	43	0	4	52	1.22
147202--147254	24	2.3	23	80	9	63	28	9	13	49	1.73
147525--147580	19	2.9	19	83	2	67	33	21	19	25	1.97
147585--147626	19	2.2	19	95	0	75	38	4	26	30	1.77
148009--148098	21	4.4	21	81	8	123	31	25	23	20	1.98

Tables:   1

The End!