Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002517.1 Hibiscus syriacus cultivar Beakdansim tig00005120_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47277

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10266--10310
22
2.0
22
95
0
81
37
22
15
24
1.93
13381--13426
2
24.5
2
82
12
62
50
2
0
47
1.13
34289--34335
18
2.6
18
100
0
94
23
36
14
25
1.93
34619--34835
110
2.0
110
98
0
416
29
29
23
17
1.97
35989--36022
14
2.5
13
86
9
50
79
0
0
20
0.73
35997--36032
17
2.1
18
89
5
56
77
0
2
19
0.88
36078--36120
10
4.3
10
81
0
50
81
0
4
13
0.84
36156--36236
34
2.5
33
75
15
78
65
2
7
24
1.31
36373--36421
25
2.0
25
84
8
64
57
0
6
36
1.24
36377--36426
19
2.6
19
84
6
66
58
0
6
36
1.23
37510--37696
83
2.2
86
81
8
224
26
18
19
35
1.95
37915--38272
106
3.4
107
80
7
414
22
18
24
35
1.96
38192--38336
63
2.3
63
93
2
247
24
15
24
35
1.94
39037--39348
65
4.6
65
75
10
230
40
10
20
28
1.86
39013--39209
65
2.9
67
84
4
238
37
9
21
31
1.86
39157--39486
36
9.4
36
73
15
262
38
13
20
27
1.90
39189--39221
15
2.1
16
88
5
50
39
9
21
30
1.84
39103--39363
140
1.9
140
88
0
396
40
12
20
26
1.88
39169--39262
39
2.5
38
82
5
111
41
14
22
21
1.89
39191--39562
102
3.7
99
87
4
397
37
13
19
29
1.90
39401--39562
37
4.6
37
72
18
139
35
14
20
29
1.92
39299--39562
102
2.6
101
93
1
438
35
13
21
29
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41232--41291
26
2.4
25
83
8
70
3
18
3
75
1.09
41233--41285
13
4.0
13
81
11
63
1
16
3
77
1.01
41232--41284
28
2.0
25
89
10
79
3
16
3
75
1.10
44434--44458
11
2.3
11
100
0
50
84
0
0
16
0.63
46586--46628
18
2.4
19
80
7
54
41
6
0
51
1.29

Tables:   1

The End!