genome.fa.s2519.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002519.1 Hibiscus syriacus cultivar Beakdansim tig00005130_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101221

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
327--374	19	2.5	20	82	3	62	52	6	12	29	1.63
11393--11448	30	2.0	27	82	10	67	41	0	1	57	1.09
11657--11716	14	4.4	13	72	16	50	38	0	1	60	1.07
11665--11716	24	2.1	25	89	3	79	38	0	0	61	0.96
11665--11716	8	6.4	8	73	4	50	38	0	0	61	0.96
11690--11748	17	3.4	17	73	15	57	40	0	5	54	1.23
11701--11797	42	2.4	41	81	11	112	42	1	3	53	1.23
12067--12091	13	1.9	13	100	0	50	36	8	0	56	1.29
18741--18780	21	1.9	21	89	0	62	55	7	7	30	1.56
33080--33349	150	1.8	146	89	6	427	37	7	7	47	1.61
35491--35544	14	3.8	14	85	4	72	22	14	11	51	1.73
43575--43740	54	3.1	54	92	1	253	37	15	23	24	1.93
44098--44176	22	3.6	22	85	0	104	32	17	12	36	1.88
44615--45271	113	5.6	113	89	5	795	38	15	19	26	1.91
44615--45359	226	3.2	229	82	8	815	38	14	19	26	1.91
44954--45359	123	3.3	124	90	1	602	40	14	19	25	1.90
50366--50467	34	2.9	35	92	4	170	44	12	14	28	1.82
50859--50901	18	2.5	17	85	7	61	25	4	2	67	1.22
50899--50931	2	16.5	2	93	0	57	45	0	3	51	1.16
55157--55215	21	2.9	21	83	14	70	77	8	13	0	0.97
55166--55208	11	3.9	11	78	9	52	79	6	13	0	0.93
55158--55225	21	3.3	21	79	4	68	80	7	10	1	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56707--56828	36	3.4	36	75	8	106	24	20	16	38	1.92
56844--57105	36	7.4	36	79	10	272	27	19	13	40	1.89
56886--57070	101	1.8	101	89	2	291	27	17	14	40	1.88
56757--57168	138	3.0	137	85	1	547	28	20	12	39	1.89
57063--57220	65	2.4	67	88	3	221	33	21	7	37	1.82
57063--57235	67	2.6	67	86	3	199	33	21	8	36	1.83
57838--58602	105	7.3	105	90	2	1087	33	27	17	21	1.96
59137--59238	34	2.9	35	92	4	170	44	12	14	28	1.82
59628--59670	18	2.5	17	85	7	61	25	4	2	67	1.22
59668--59698	2	15.5	2	93	0	53	45	0	3	51	1.17
60786--60872	16	5.4	16	88	0	102	19	21	13	44	1.85
60786--60868	32	2.6	32	90	0	121	20	21	13	44	1.85
60784--60889	48	2.2	47	78	5	113	21	22	13	42	1.87
61049--61106	22	2.5	22	88	11	80	58	0	1	39	1.08
61129--61178	23	2.1	24	92	3	84	48	0	2	50	1.12
61267--61332	15	4.4	15	76	14	73	53	3	6	37	1.41
62019--62063	20	2.2	20	84	0	54	60	13	8	17	1.58
62028--62072	20	2.2	20	80	0	54	64	11	8	15	1.49
62140--62208	33	2.1	33	100	0	138	50	5	2	40	1.41
63629--63671	12	3.2	12	77	22	50	51	0	0	48	1.00
63629--63716	44	2.0	45	82	10	110	47	1	2	48	1.21
63705--63774	31	2.3	30	88	9	99	51	2	2	42	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63712--63758	24	1.9	25	82	4	60	55	4	2	38	1.31
63710--63889	88	2.0	88	84	6	231	48	4	6	41	1.48
63748--63888	21	6.5	21	70	11	72	46	4	7	41	1.53
63919--64054	57	2.4	55	82	4	166	40	6	8	44	1.62
64012--64085	37	2.1	36	84	5	96	40	12	8	39	1.72
64290--64399	42	2.6	42	95	0	193	40	12	8	39	1.73
64444--64505	21	3.0	21	71	19	58	40	3	4	51	1.39
64559--64802	2	125.5	2	72	15	174	44	0	3	52	1.17
64559--64802	20	12.4	20	74	14	199	44	0	3	52	1.17
65449--65588	64	2.2	64	84	2	192	27	29	17	25	1.98
68167--68235	23	3.0	23	84	0	93	27	26	26	20	1.99
68251--68468	103	2.1	103	95	1	393	37	23	13	26	1.91
73071--73117	20	2.4	18	80	19	58	42	23	2	31	1.66
73283--73351	23	3.0	24	82	6	88	27	23	27	21	1.99
73367--73584	103	2.1	103	94	0	382	36	23	13	26	1.92
78793--78849	12	4.5	13	85	10	82	54	0	1	43	1.10
78793--78849	2	31.0	2	81	16	70	54	0	1	43	1.10
78838--78881	20	2.1	22	83	8	56	36	0	27	36	1.57
85712--85752	2	20.5	2	100	0	82	48	0	0	51	1.00
88248--88358	32	3.2	33	76	15	116	16	9	31	42	1.81
89627--89672	18	2.6	17	86	10	65	32	4	2	60	1.28
90828--90868	18	2.3	18	91	4	66	29	4	2	63	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93031--93081	25	2.1	24	82	13	61	25	1	5	66	1.24
93047--93118	26	3.0	24	68	27	62	26	6	4	62	1.39
93764--93890	51	2.5	51	78	10	125	26	25	30	16	1.97
96757--96793	2	18.5	2	100	0	74	48	0	0	51	1.00

Tables:   1

The End!