genome.fa.s2520.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002520.1 Hibiscus syriacus cultivar Beakdansim tig00005131_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97324

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1302--1364	23	3.0	20	71	15	63	52	15	4	26	1.63
1459--1512	29	1.9	27	92	3	81	53	11	12	22	1.70
3602--3639	18	2.2	18	90	4	60	31	0	55	13	1.38
10290--10571	142	2.0	143	97	0	539	42	12	18	26	1.86
20873--20915	20	2.3	19	88	11	70	23	30	9	37	1.86
20878--20915	20	1.9	20	100	0	76	23	28	10	36	1.88
23706--23742	16	2.3	16	100	0	74	29	21	0	48	1.50
23814--23851	20	2.0	19	90	10	60	21	21	10	47	1.80
23819--23858	20	2.0	20	90	0	62	22	27	10	40	1.86
34409--34633	64	3.5	64	82	4	258	33	20	18	27	1.96
35385--35607	103	2.2	103	100	0	446	25	13	25	36	1.91
35619--35681	23	2.7	23	85	9	83	20	26	25	26	1.99
40152--40376	64	3.5	64	81	6	188	33	19	19	28	1.96
41127--41349	103	2.2	103	97	0	419	25	12	25	37	1.90
41361--41423	23	2.7	23	88	9	85	19	26	26	26	1.99
51748--51781	18	1.9	18	88	5	52	55	2	2	38	1.30
51945--52014	29	2.4	29	83	4	79	45	4	2	47	1.37
52269--52426	21	7.8	20	72	7	86	38	25	17	18	1.92
52393--52586	20	9.6	20	80	7	205	35	26	18	19	1.95
52393--52586	60	3.2	60	80	6	230	35	26	18	19	1.95
52970--53040	33	2.2	33	92	0	115	11	22	18	47	1.80
53119--53196	41	1.9	41	94	0	138	44	16	24	14	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53120--53195	21	3.7	21	82	3	100	46	17	23	13	1.83
53180--53236	14	3.7	14	77	20	60	42	22	22	12	1.87
53175--53239	33	2.0	33	96	0	121	43	21	23	12	1.86
53175--53222	19	2.8	19	76	23	61	43	20	20	14	1.87
53178--53252	33	2.3	33	90	0	114	45	24	20	10	1.82
53270--53326	14	3.7	14	75	20	60	8	24	22	43	1.81
53253--53345	33	2.8	33	98	0	177	10	21	21	46	1.81
53248--53353	19	6.1	19	73	20	106	11	22	19	46	1.82
53422--53473	25	2.1	26	82	7	63	19	9	17	53	1.70
55045--55512	93	5.1	93	98	0	904	21	13	19	45	1.84
55045--55512	185	2.5	186	98	1	904	21	13	19	45	1.84
55560--55688	19	7.3	19	75	17	125	46	28	15	9	1.77
55596--55688	33	2.8	32	91	4	150	47	27	16	8	1.75
55560--55688	52	2.5	52	72	14	131	46	28	15	9	1.77
56485--56520	14	2.6	14	95	0	63	33	0	22	44	1.53
56674--56839	32	4.9	33	72	19	144	13	22	18	45	1.84
56696--56905	19	12.4	19	75	19	175	12	22	18	46	1.83
56674--56872	52	3.9	52	91	5	338	13	23	18	45	1.83
56784--56886	14	6.7	14	71	18	80	11	24	20	43	1.85
56715--56905	33	5.8	33	76	17	191	12	23	18	46	1.82
56877--56924	19	2.5	20	86	3	62	12	18	25	43	1.85
59178--59202	12	2.1	12	100	0	50	0	28	0	72	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60099--60328	20	11.5	20	84	1	228	20	18	24	36	1.94
60315--60397	21	4.0	21	73	6	78	25	16	24	33	1.96
60295--60393	42	2.4	43	77	11	100	21	18	23	37	1.94
63175--63211	2	19.0	2	88	5	58	48	2	0	48	1.15
64988--65013	6	4.3	6	100	0	52	50	0	0	50	1.00
68315--70197	105	18.0	105	94	1	3221	33	24	18	23	1.97
70755--70809	2	28.0	2	92	3	94	49	1	0	49	1.11
73175--73267	29	3.2	29	63	19	77	34	5	8	51	1.55
73187--73273	28	3.2	26	63	15	66	36	5	10	47	1.62
73164--73275	57	1.9	58	94	5	201	35	4	8	50	1.54
88969--89046	38	2.1	38	100	0	156	23	7	26	42	1.81
93212--93259	19	2.5	19	75	0	51	43	0	4	52	1.20
95533--95575	6	7.2	6	100	0	86	16	51	0	32	1.45
95579--95611	6	5.5	6	100	0	66	15	51	0	33	1.43

Tables:   1

The End!