Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002522.1 Hibiscus syriacus cultivar Beakdansim tig00005133_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 171236
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Found at i:4924 original size:31 final size:31
Alignment explanation
Indices: 4884--4949 Score: 89
Period size: 31 Copynumber: 2.1 Consensus size: 31
4874 TTAAAATGAG
4884 TATAGTTAAATCAAC-ATCAAAATTTTATGTA
1 TATAGTTAAA-CAACAATCAAAATTTTATGTA
* * *
4915 TATATTTAAACCACAATTAAAATTTTATGTA
1 TATAGTTAAACAACAATCAAAATTTTATGTA
4946 TATA
1 TATA
4950 ATTGCATTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
30 3 0.10
31 28 0.90
ACGTcount: A:0.45, C:0.09, G:0.05, T:0.41
Consensus pattern (31 bp):
TATAGTTAAACAACAATCAAAATTTTATGTA
Found at i:5395 original size:32 final size:32
Alignment explanation
Indices: 5359--5467 Score: 177
Period size: 32 Copynumber: 3.4 Consensus size: 32
5349 ACAAGGGATA
*
5359 GGTTGATTTCTTTTAGTCTGGTTATGGATACT
1 GGTTGATTTCTTTTAGTCTGGTTATGGATGCT
5391 GGTTGATTTCTTTTAGTCTGGTTACT-GATGCT
1 GGTTGATTTCTTTTAGTCTGGTTA-TGGATGCT
5423 GGTTGATTTCTTTTAGTCTGGTTATGGATGCT
1 GGTTGATTTCTTTTAGTCTGGTTATGGATGCT
5455 GGTTGCA-TTCTTT
1 GGTTG-ATTTCTTT
5468 GTGGGAATGA
Statistics
Matches: 73, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
31 1 0.01
32 70 0.96
33 2 0.03
ACGTcount: A:0.13, C:0.11, G:0.26, T:0.50
Consensus pattern (32 bp):
GGTTGATTTCTTTTAGTCTGGTTATGGATGCT
Found at i:5413 original size:19 final size:19
Alignment explanation
Indices: 5389--5445 Score: 54
Period size: 19 Copynumber: 3.3 Consensus size: 19
5379 GTTATGGATA
5389 CTGGTTGATTTCTTTTAGT
1 CTGGTTGATTTCTTTTAGT
**
5408 CTGGTT-A---CTGAT-G-
1 CTGGTTGATTTCTTTTAGT
5421 CTGGTTGATTTCTTTTAGT
1 CTGGTTGATTTCTTTTAGT
5440 CTGGTT
1 CTGGTT
5446 ATGGATGCTG
Statistics
Matches: 28, Mismatches: 4, Indels: 12
0.64 0.09 0.27
Matches are distributed among these distances:
13 6 0.21
14 2 0.07
15 3 0.11
17 3 0.11
18 2 0.07
19 12 0.43
ACGTcount: A:0.11, C:0.12, G:0.25, T:0.53
Consensus pattern (19 bp):
CTGGTTGATTTCTTTTAGT
Found at i:7953 original size:24 final size:23
Alignment explanation
Indices: 7908--7953 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
7898 TTGTAAATAT
*
7908 GATAATAGAGATGTGATTGAGAG
1 GATAATAGAGATGTGATAGAGAG
7931 GATAAT-GAGTATGATGATAGAGA
1 GATAATAGAG-ATG-TGATAGAGA
7954 AGCAACTGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 3 0.15
23 9 0.45
24 8 0.40
ACGTcount: A:0.41, C:0.00, G:0.33, T:0.26
Consensus pattern (23 bp):
GATAATAGAGATGTGATAGAGAG
Found at i:10035 original size:15 final size:16
Alignment explanation
Indices: 9999--10037 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
9989 AGAGCCTCTG
*
9999 AATCATTCATCATTTA
1 AATCATTCAGCATTTA
10015 AATCATTCAGCATTT-
1 AATCATTCAGCATTTA
10030 AATCATTC
1 AATCATTC
10038 TGAAGTAAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 8 0.36
16 14 0.64
ACGTcount: A:0.36, C:0.21, G:0.03, T:0.41
Consensus pattern (16 bp):
AATCATTCAGCATTTA
Found at i:19275 original size:28 final size:29
Alignment explanation
Indices: 19244--19299 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
19234 ATTTCAAAAT
19244 TATAATTATAAA-AAAATATTAATTTATA
1 TATAATTATAAATAAAATATTAATTTATA
* *
19272 TATATTTATAAATAAAATATTTATTTAT
1 TATAATTATAAATAAAATATTAATTTAT
19300 TCAGAAATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 11 0.44
29 14 0.56
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (29 bp):
TATAATTATAAATAAAATATTAATTTATA
Found at i:19505 original size:118 final size:117
Alignment explanation
Indices: 19264--19498 Score: 305
Period size: 118 Copynumber: 2.0 Consensus size: 117
19254 AAAAAATATT
* * *
19264 AATTTATATATATTTATAAATAAAATATTTATTTATTCAGAAATATCAGAAAAGGACTTCTAGGT
1 AATTAATATA-ATTTATAAATAAAATATTTATTTATTCAAAAATATCAGAAAAGGACATCTAGGT
* *
19329 GCCTTAAGACAGCTCTTTTCTTTGATATTAAAAAATAAATAAATAATTAAAAC
65 GCCTTAAGACAGCTCCTTTCTTTAATATTAAAAAATAAATAAATAATTAAAAC
** * *
19382 AATTAATATAATTTATAAAATAGGATATTTATTTATTTAAAAATATCAGAAAATGGACATCTAGT
1 AATTAATATAATTTAT-AAATAAAATATTTATTTATTCAAAAATATCAGAAAA-GGACATCTAGG
** * *
19447 TGTTTTAAGACTGC-CCTTTC-TTAATATTGAAAAATAAATAAAT-ATTAAAAC
64 TGCCTTAAGACAGCTCCTTTCTTTAATATTAAAAAATAAATAAATAATTAAAAC
19498 A
1 A
19499 GGATTAAAAT
Statistics
Matches: 102, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
116 9 0.09
117 27 0.26
118 46 0.45
119 20 0.20
ACGTcount: A:0.46, C:0.09, G:0.09, T:0.37
Consensus pattern (117 bp):
AATTAATATAATTTATAAATAAAATATTTATTTATTCAAAAATATCAGAAAAGGACATCTAGGTG
CCTTAAGACAGCTCCTTTCTTTAATATTAAAAAATAAATAAATAATTAAAAC
Found at i:19574 original size:22 final size:18
Alignment explanation
Indices: 19529--19564 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
19519 TAATTAAATA
19529 AAATAAATATTATTTATT
1 AAATAAATATTATTTATT
*
19547 ATATAAATATATATTTAT
1 AAATAAATAT-TATTTAT
19565 GGCTAAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
AAATAAATATTATTTATT
Found at i:19614 original size:13 final size:13
Alignment explanation
Indices: 19596--19623 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
19586 ATAATAATTA
19596 AAAATTAACATAT
1 AAAATTAACATAT
19609 AAAATTAACATAT
1 AAAATTAACATAT
19622 AA
1 AA
19624 CTAAACAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.29
Consensus pattern (13 bp):
AAAATTAACATAT
Found at i:20809 original size:3 final size:3
Alignment explanation
Indices: 20801--20869 Score: 90
Period size: 3 Copynumber: 23.7 Consensus size: 3
20791 TAAAATTATT
* *
20801 TAA TAA TAA TAA T-A TAA TAA TAA TAA TAA TTA TAA TTA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
20848 TAA TAA TAA -AA T-A TAAA TAA TA
1 TAA TAA TAA TAA TAA T-AA TAA TA
20870 TTCAAATGAA
Statistics
Matches: 58, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
2 6 0.10
3 50 0.86
4 2 0.03
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:21343 original size:113 final size:113
Alignment explanation
Indices: 21208--21750 Score: 689
Period size: 113 Copynumber: 4.8 Consensus size: 113
21198 TAGAGTCATG
* * * *
21208 CAAAAGGTCGAACAAACTCTTCTCATTATGAACTTCTTATTCCTTCTTCAGATAAGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* * *
21273 TTATGAACTTTCTCTGGAAAAGTTGATCCATCTAGTGATGAATTTAAA
66 TTATGAACTTTCTCTGGAAAAGCTGATCCACCGAGTGATGAATTTAAA
* *
21321 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTTCTTCTTCAGATGAGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* ** * ** *
21386 TTATGAACTCTAACTGGCAGTGCTGATTCACCGAGTGATGAATTTAAA
66 TTATGAACTTTCTCTGGAAAAGCTGATCCACCGAGTGATGAATTTAAA
* *
21434 CAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTTTTCCTTCTTCAGATGAGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
** ** * * * *
21499 TTATGAACTCTAAT-TGGCACTA-CTGATTCACCGAATGATGAATTCAAG
66 TTATGAACT-TTCTCTGG-AAAAGCTGATCCACCGAGTGATGAATTTAAA
* * * * * *
21547 CGAAATGTTAAACAAGTTCTTCTTATTATGAACTTCTTCTTCCTTCTTCATATGAGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* * *
21612 TTATGAACTTTCTCTGGAAAAGTTGATCCATCAAGTGATGAATTTAAA
66 TTATGAACTTTCTCTGGAAAAGCTGATCCACCGAGTGATGAATTTAAA
* *
21660 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTTCTTCTTCAGATGAGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
*
21725 TTATGAA--TTCTTCTGGAAATGCTGAT
66 TTATGAACTTTC-TCTGGAAAAGCTGAT
21751 GACCCGAAGG
Statistics
Matches: 368, Mismatches: 57, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
111 3 0.01
112 17 0.05
113 347 0.94
114 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.13, T:0.39
Consensus pattern (113 bp):
CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
TTATGAACTTTCTCTGGAAAAGCTGATCCACCGAGTGATGAATTTAAA
Found at i:21600 original size:24 final size:23
Alignment explanation
Indices: 21565--21609 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
21555 TAAACAAGTT
21565 CTTCTTATTATGAACTTCTTCTTC
1 CTTCTTATTATG-ACTTCTTCTTC
*
21589 CTTCTTCA-TATGAGTTCTTCT
1 CTTCTT-ATTATGACTTCTTCT
21610 CATTATGAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 8 0.42
24 10 0.53
25 1 0.05
ACGTcount: A:0.16, C:0.24, G:0.07, T:0.53
Consensus pattern (23 bp):
CTTCTTATTATGACTTCTTCTTC
Found at i:21874 original size:76 final size:76
Alignment explanation
Indices: 21748--22055 Score: 526
Period size: 76 Copynumber: 4.1 Consensus size: 76
21738 TGGAAATGCT
* * * **
21748 GATGACCCGAAGGTTTTGAAAACATCAAAAAGCTCCCAAAGGCTTTTTGGAAACATCAAACACTG
1 GATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTG
21813 TAGGACTTACA
66 TAGGACTTACA
*
21824 GATGACCCTAAGACTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTG
1 GATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTG
21889 TAGGACTTACA
66 TAGGACTTACA
* * *
21900 GATGACGCTAAGGCTTTAAAAACATCAAAAAGCTCCCGAATGCTTTTTGGAAACATCATGCACTG
1 GATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTG
21965 TAGGACTTACA
66 TAGGACTTACA
*
21976 GATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGAAAACATCATGCACTG
1 GATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTG
22041 TAGGACTTACA
66 TAGGACTTACA
22052 GATG
1 GATG
22056 TGGGAAATAG
Statistics
Matches: 218, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
76 218 1.00
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.24
Consensus pattern (76 bp):
GATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTG
TAGGACTTACA
Found at i:22757 original size:22 final size:22
Alignment explanation
Indices: 22732--22791 Score: 93
Period size: 22 Copynumber: 2.7 Consensus size: 22
22722 AATAAAGCTT
*
22732 TCATTTTTGAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
* *
22754 TCATCTTTAAAAAGATAATCTA
1 TCATCTTTGAAAAGAGAATCTA
22776 TCATCTTTGAAAAGAG
1 TCATCTTTGAAAAGAG
22792 TATAGATGTA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.35
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAATCTA
Found at i:25090 original size:114 final size:114
Alignment explanation
Indices: 24890--25115 Score: 380
Period size: 114 Copynumber: 2.0 Consensus size: 114
24880 GATCATGCAG
* * *
24890 TTCATCTTTCAATTCCAATGATTGGTTCTGGGGTTCCTACCGAACCAGATCAGATAACTCAAAGA
1 TTCATCTTTCAAATCCAATGATTGGTTCTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGA
*
24955 ACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTATGAGAAAA
66 ACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTACGAGAAAA
* *
25004 TTCATCTTTCAAATCCAATGATTGGTTTTGGGGTTCATACCAAATCAGATCAGATAACTCAAAGA
1 TTCATCTTTCAAATCCAATGATTGGTTCTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGA
* *
25069 ATACTTCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTACGAGAA
66 ACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTACGAGAA
25116 CGTGGCACTT
Statistics
Matches: 104, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
114 104 1.00
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (114 bp):
TTCATCTTTCAAATCCAATGATTGGTTCTGGGGTTCATACCAAACCAGATCAGATAACTCAAAGA
ACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTACGAGAAAA
Found at i:28622 original size:45 final size:47
Alignment explanation
Indices: 28549--28654 Score: 162
Period size: 45 Copynumber: 2.3 Consensus size: 47
28539 TTTATTTTCG
*
28549 TTTTTCGAATAAATGCATGCGAACTAGATATCATGCGGTTAGG-TTTA
1 TTTTTTGAAT-AATGCATGCGAACTAGATATCATGCGGTTAGGATTTA
*
28596 TTTTTTGAATAA-GCATGCGAATTAGATATCATGCGGTTAGGATTTA
1 TTTTTTGAATAATGCATGCGAACTAGATATCATGCGGTTAGGATTTA
28642 TTTTTGTGAATAA
1 TTTTT-TGAATAA
28655 CAAAGCATGG
Statistics
Matches: 55, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
45 28 0.51
46 11 0.20
47 16 0.29
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (47 bp):
TTTTTTGAATAATGCATGCGAACTAGATATCATGCGGTTAGGATTTA
Found at i:38271 original size:7 final size:7
Alignment explanation
Indices: 38254--38424 Score: 57
Period size: 7 Copynumber: 22.6 Consensus size: 7
38244 AAGAAGAAAT
38254 AAAAGAGA
1 AAAAGA-A
38262 AAAAGAA
1 AAAAGAA
38269 AAAATGAA
1 AAAA-GAA
*
38277 AAAA-TA
1 AAAAGAA
* *
38283 ATAATAA
1 AAAAGAA
*
38290 AAATGAGA
1 AAAAGA-A
*
38298 AGAAG-A
1 AAAAGAA
38304 AAAAGAA
1 AAAAGAA
38311 GAAAAGAA
1 -AAAAGAA
38319 AAATGAGAA
1 AAA--AGAA
*
38328 AACAGAA
1 AAAAGAA
38335 AAATGATGGAA
1 AAA--A--GAA
38346 AAAACGAA
1 AAAA-GAA
38354 AAGAA-AA
1 AA-AAGAA
38361 AAGAAGAA
1 AA-AAGAA
38369 AAAATGGAA
1 AAAA--GAA
38378 AATGGAAGAA
1 AA---AAGAA
38388 AAAATG-A
1 AAAA-GAA
38395 AAAAG-A
1 AAAAGAA
38401 AAAA-AA
1 AAAAGAA
*
38407 AAGAGAA
1 AAAAGAA
*
38414 AAATGAA
1 AAAAGAA
38421 AAAA
1 AAAA
38425 TAAAGAAAAA
Statistics
Matches: 126, Mismatches: 16, Indels: 43
0.68 0.09 0.23
Matches are distributed among these distances:
6 19 0.15
7 45 0.36
8 34 0.27
9 15 0.12
10 5 0.04
11 6 0.05
12 2 0.02
ACGTcount: A:0.74, C:0.01, G:0.18, T:0.07
Consensus pattern (7 bp):
AAAAGAA
Found at i:38398 original size:19 final size:18
Alignment explanation
Indices: 38352--38435 Score: 82
Period size: 18 Copynumber: 4.6 Consensus size: 18
38342 GGAAAAAACG
*
38352 AAAAGAAAAAAGAAGAAA
1 AAAAGAAAAATGAAGAAA
* *
38370 AAATGGAAAATGGAAGAAA
1 AAAAGAAAAAT-GAAGAAA
* *
38389 AAATGAAAAA-GAAAAAA
1 AAAAGAAAAATGAAGAAA
38406 AAAGAGAAAAATGAA-AAA
1 AAA-AGAAAAATGAAGAAA
38424 ATAAAGAAAAAT
1 A-AAAGAAAAAT
38436 AAAAGGGGGG
Statistics
Matches: 56, Mismatches: 6, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
17 9 0.16
18 26 0.46
19 21 0.38
ACGTcount: A:0.76, C:0.00, G:0.17, T:0.07
Consensus pattern (18 bp):
AAAAGAAAAATGAAGAAA
Found at i:39772 original size:37 final size:36
Alignment explanation
Indices: 39716--39787 Score: 108
Period size: 37 Copynumber: 2.0 Consensus size: 36
39706 AAACAAGTCA
*
39716 ATCTTAAGCCTTCATGGAAGAGTAGTAAAGCAAACC
1 ATCTTAAGCCTTCACGGAAGAGTAGTAAAGCAAACC
* *
39752 ATCTGTAAGCCTTCACGGAAGATTAGTGAAGCAAAC
1 ATCT-TAAGCCTTCACGGAAGAGTAGTAAAGCAAAC
39788 TCATTTTATG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
36 4 0.12
37 28 0.88
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.22
Consensus pattern (36 bp):
ATCTTAAGCCTTCACGGAAGAGTAGTAAAGCAAACC
Found at i:40276 original size:55 final size:55
Alignment explanation
Indices: 39802--40276 Score: 585
Period size: 55 Copynumber: 8.7 Consensus size: 55
39792 TTTATGAAGA
* * * * * *
39802 TCGAGTCCTATACTCTCTGAAGGAATAGGGAGTGGACACGTTTGT-TAAAGA---T
1 TCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCCATTT-TATGAAGATTGT
* * *
39854 T-GAGTCCTATACTCTCTGAAGGAATAGGGAGCGGA--CTTGTTTATTGAAGATT-T
1 TCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCCAT-TTTA-TGAAGATTGT
*
39907 TCCGAGTTCTATACTCTCTGAATGAATAGAGAGCGGACCCATTTTATGAAGATTGT
1 T-CGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCCATTTTATGAAGATTGT
* *
39963 TCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACTCGTTTGT-TGAAGATTGT
1 TCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCCATTT-TATGAAGATTGT
* * * *
40018 TCGAGTTCCATACTTTCTGAAGGAATAGAGAGCGGACCCGTTTTATTAAAGATTGT
1 TCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCCATTTTA-TGAAGATTGT
* * *
40074 TCGAGTTCTATACTCTCTGAAGGAATATAGAGCGGACTCGTTTGT-TGAAGATTGT
1 TCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCCATTT-TATGAAGATTGT
*
40129 TCGAGTTCCATACTCTCTGAAGGAATAGAGAGCGGACCCATTTTATGAAGATTGT
1 TCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCCATTTTATGAAGATTGT
*
40184 TCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCCATTTTATGAAAATTGT
1 TCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCCATTTTATGAAGATTGT
* * *
40239 TCGAGTTCTATACTCCCTG-AGCGGATAGGGAGCGGACC
1 TCGAGTTCTATACTCTCTGAAG-GAATAGAGAGCGGACC
40277 TATCATTTGA
Statistics
Matches: 379, Mismatches: 28, Indels: 29
0.87 0.06 0.07
Matches are distributed among these distances:
49 3 0.01
50 2 0.01
51 38 0.10
52 1 0.00
53 2 0.01
54 4 0.01
55 271 0.72
56 55 0.15
57 3 0.01
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (55 bp):
TCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCCATTTTATGAAGATTGT
Found at i:40276 original size:221 final size:216
Alignment explanation
Indices: 39802--40276 Score: 686
Period size: 221 Copynumber: 2.2 Consensus size: 216
39792 TTTATGAAGA
* * * *
39802 TCGAGTCCTATACTCTCTGAAGGAATAGGGAGTGGACACGTTTGTTAAAGATTGAGTCCTATACT
1 TCGAGTTCTATACTCTCTGAAGGAATAGGGAGCGGACCCGTTTATTAAAGATTGAGTCCTATACT
* * * *
39867 CTCTGAAGGAATAGGGAGCGGACTTGTTTATTGAAGATTTTCCGAGTTCTATACTCTCTGAATGA
66 CTCTGAAGGAATAGAGAGCGGACTCGTTTATTGAAGATTTTCCGAGTTCCATACTCTCTGAAGGA
39932 ATAGAGAGCGGACCCATTTTATGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCG
131 ATAGAGAGCGGACCCATTTTATGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCG
* * *
39997 GACTCGTTTGTTGAAGATTGT
196 GACCCATTTGTTGAAAATTGT
* * * *
40018 TCGAGTTCCATACTTTCTGAAGGAATAGAGAGCGGACCCGTTTTATTAAAGATTGTTCGAGTTCT
1 TCGAGTTCTATACTCTCTGAAGGAATAGGGAGCGGACCCG-TTTATTAAAGA---TT-GAGTCCT
* *
40083 ATACTCTCTGAAGGAATATAGAGCGGACTCGTTTGTTGAAGATTGTT-CGAGTTCCATACTCTCT
61 ATACTCTCTGAAGGAATAGAGAGCGGACTCGTTTATTGAAGATT-TTCCGAGTTCCATACTCTCT
40147 GAAGGAATAGAGAGCGGACCCATTTTATGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAG
125 GAAGGAATAGAGAGCGGACCCATTTTATGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAG
40212 AGAGCGGACCCATTT-TATGAAAATTGT
190 AGAGCGGACCCATTTGT-TGAAAATTGT
* *
40239 TCGAGTTCTATACTCCCTG-AGCGGATAGGGAGCGGACC
1 TCGAGTTCTATACTCTCTGAAG-GAATAGGGAGCGGACC
40277 TATCATTTGA
Statistics
Matches: 229, Mismatches: 22, Indels: 11
0.87 0.08 0.04
Matches are distributed among these distances:
216 34 0.15
217 10 0.04
220 5 0.02
221 178 0.78
222 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (216 bp):
TCGAGTTCTATACTCTCTGAAGGAATAGGGAGCGGACCCGTTTATTAAAGATTGAGTCCTATACT
CTCTGAAGGAATAGAGAGCGGACTCGTTTATTGAAGATTTTCCGAGTTCCATACTCTCTGAAGGA
ATAGAGAGCGGACCCATTTTATGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCG
GACCCATTTGTTGAAAATTGT
Found at i:44867 original size:18 final size:16
Alignment explanation
Indices: 44812--44871 Score: 50
Period size: 18 Copynumber: 3.6 Consensus size: 16
44802 ATTTCTCTCC
*
44812 TTTTTCTTTTTTCCTTTT
1 TTTTTC-TTTTT-CTCTT
*
44830 TTTTTCTTTTT-TCTC
1 TTTTTCTTTTTCTCTT
*
44845 ATTTTCATTTTTCATCTT
1 TTTTTC-TTTTTC-TCTT
44863 TTTTTCTTT
1 TTTTTCTTT
44872 CTTTGCTGGA
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
15 7 0.21
16 5 0.15
17 8 0.24
18 14 0.41
ACGTcount: A:0.05, C:0.17, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTTTCTTTTTCTCTT
Found at i:44886 original size:22 final size:22
Alignment explanation
Indices: 44861--44904 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
44851 ATTTTTCATC
44861 TTTTTTTCTTTCTTTGCTGGAT
1 TTTTTTTCTTTCTTTGCTGGAT
44883 TTTTTTTCTTTCTTTGCTGGAT
1 TTTTTTTCTTTCTTTGCTGGAT
44905 GAGTATAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.05, C:0.14, G:0.14, T:0.68
Consensus pattern (22 bp):
TTTTTTTCTTTCTTTGCTGGAT
Found at i:47723 original size:12 final size:12
Alignment explanation
Indices: 47706--47756 Score: 57
Period size: 12 Copynumber: 4.0 Consensus size: 12
47696 TGGAAATATG
47706 CAAATGTAAATA
1 CAAATGTAAATA
*
47718 CAAATGTAAAAAATG
1 CAAATGT---AAATA
*
47733 CAAATGTAAATG
1 CAAATGTAAATA
47745 CAAATGTAAATA
1 CAAATGTAAATA
47757 TATGAATGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
12 23 0.68
15 11 0.32
ACGTcount: A:0.57, C:0.08, G:0.12, T:0.24
Consensus pattern (12 bp):
CAAATGTAAATA
Found at i:47733 original size:27 final size:27
Alignment explanation
Indices: 47703--47754 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
47693 TTATGGAAAT
47703 ATGCAAATGTAAATACAAATGTAAAAA
1 ATGCAAATGTAAATACAAATGTAAAAA
*
47730 ATGCAAATGTAAATGCAAATGTAAA
1 ATGCAAATGTAAATACAAATGTAAA
47755 TATATGAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.56, C:0.08, G:0.13, T:0.23
Consensus pattern (27 bp):
ATGCAAATGTAAATACAAATGTAAAAA
Found at i:47848 original size:7 final size:7
Alignment explanation
Indices: 47814--47855 Score: 50
Period size: 7 Copynumber: 6.0 Consensus size: 7
47804 ATAAGAGTAT
47814 AAATGCA
1 AAATGCA
* *
47821 CAATGAA
1 AAATGCA
47828 AAATGCA
1 AAATGCA
47835 AAGATGCA
1 AA-ATGCA
47843 AAATGC-
1 AAATGCA
47849 AAATGCA
1 AAATGCA
47856 TGTATGAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
6 6 0.21
7 16 0.55
8 7 0.24
ACGTcount: A:0.55, C:0.14, G:0.17, T:0.14
Consensus pattern (7 bp):
AAATGCA
Found at i:49351 original size:33 final size:33
Alignment explanation
Indices: 49309--49376 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 33
49299 CTCTGACAGA
*
49309 AAAATAAATAATGAAATA-AAATACT-TGCAAAT
1 AAAATAAATAAT-AAATATAAATACTATGAAAAT
*
49341 AAAATGAAATAATATATATAAATACTATGAAAAT
1 AAAAT-AAATAATAAATATAAATACTATGAAAAT
49375 AA
1 AA
49377 TAAGTATAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
32 9 0.29
33 14 0.45
34 8 0.26
ACGTcount: A:0.63, C:0.04, G:0.06, T:0.26
Consensus pattern (33 bp):
AAAATAAATAATAAATATAAATACTATGAAAAT
Found at i:49363 original size:23 final size:24
Alignment explanation
Indices: 49337--49386 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
49327 AAATACTTGC
49337 AAATAAAATG-AAATAATATA-TAT
1 AAATAAAATGAAAATAATA-AGTAT
**
49360 AAATACTATGAAAATAATAAGTAT
1 AAATAAAATGAAAATAATAAGTAT
49384 AAA
1 AAA
49387 AAATTTGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 9 0.39
24 14 0.61
ACGTcount: A:0.64, C:0.02, G:0.06, T:0.28
Consensus pattern (24 bp):
AAATAAAATGAAAATAATAAGTAT
Found at i:49896 original size:29 final size:29
Alignment explanation
Indices: 49864--49920 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
49854 ATTTCAAAAT
49864 TATAATTATAAAAAAAATATTAATTTATA
1 TATAATTATAAAAAAAATATTAATTTATA
* * *
49893 TATATTTATAAATAAAATATTTATTTAT
1 TATAATTATAAAAAAAATATTAATTTAT
49921 TTAGAAATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (29 bp):
TATAATTATAAAAAAAATATTAATTTATA
Found at i:50126 original size:118 final size:117
Alignment explanation
Indices: 49885--50119 Score: 314
Period size: 118 Copynumber: 2.0 Consensus size: 117
49875 AAAAAATATT
* * *
49885 AATTTATATATATTTATAAATAAAATATTTATTTATTTAGAAATATCAGAAAAGGACTTCTAGGT
1 AATTAATATA-ATTTATAAATAAAATATTTATTTATTTAAAAATATCAGAAAAGGACATCTAGGT
* *
49950 GCCTTAAGACAGCTCTTTTCTTTGATATTAAAAAATAAATAAATAATTAAAAC
65 GCCTTAAGACAGCTCATTTCTTTAATATTAAAAAATAAATAAATAATTAAAAC
** *
50003 AATTAATATAATTTATAAAATAGGATATTTATTTATTTAAAAATATCAGAAAATGGACATCTAGT
1 AATTAATATAATTTAT-AAATAAAATATTTATTTATTTAAAAATATCAGAAAA-GGACATCTAGG
** * *
50068 TGTTTTAAGACTGC-CATTTC-TTAATATTGAAAAATAAATAAAT-ATTAAAAC
64 TGCCTTAAGACAGCTCATTTCTTTAATATTAAAAAATAAATAAATAATTAAAAC
50119 A
1 A
50120 GGATTAAAAT
Statistics
Matches: 103, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
116 9 0.09
117 27 0.26
118 47 0.46
119 20 0.19
ACGTcount: A:0.46, C:0.08, G:0.09, T:0.38
Consensus pattern (117 bp):
AATTAATATAATTTATAAATAAAATATTTATTTATTTAAAAATATCAGAAAAGGACATCTAGGTG
CCTTAAGACAGCTCATTTCTTTAATATTAAAAAATAAATAAATAATTAAAAC
Found at i:50195 original size:22 final size:18
Alignment explanation
Indices: 50150--50185 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
50140 TAATTAAATA
50150 AAATAAATATTATTTATT
1 AAATAAATATTATTTATT
*
50168 ATATAAATATATATTTAT
1 AAATAAATAT-TATTTAT
50186 GGCTAAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
AAATAAATATTATTTATT
Found at i:50232 original size:13 final size:13
Alignment explanation
Indices: 50214--50241 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
50204 ATAATAATTA
50214 AAAATTAACATAT
1 AAAATTAACATAT
50227 AAAATTAACATAT
1 AAAATTAACATAT
50240 AA
1 AA
50242 CTAAACAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.29
Consensus pattern (13 bp):
AAAATTAACATAT
Found at i:51473 original size:3 final size:3
Alignment explanation
Indices: 51465--51527 Score: 96
Period size: 3 Copynumber: 21.7 Consensus size: 3
51455 TAAAATTATT
51465 TAA TAA TAA TAA T-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
51512 TAA -AA T-A TAAA TAA TA
1 TAA TAA TAA T-AA TAA TA
51528 TTCAAATGAA
Statistics
Matches: 56, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
2 6 0.11
3 48 0.86
4 2 0.04
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:53178 original size:7 final size:7
Alignment explanation
Indices: 53166--53193 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
53156 TTTTTCTTAT
53166 GTCCTGA
1 GTCCTGA
53173 GTCCTGA
1 GTCCTGA
53180 GTCCTGA
1 GTCCTGA
53187 GTCCTGA
1 GTCCTGA
53194 CTCGATTCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.14, C:0.29, G:0.29, T:0.29
Consensus pattern (7 bp):
GTCCTGA
Found at i:58046 original size:23 final size:23
Alignment explanation
Indices: 58010--58082 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
58000 ATACTTTACA
* *
58010 ATATAAGCACTACCTATTACATT
1 ATATAAACGCTACCTATTACATT
*
58033 ATATAAACGTTACCTATTACATT
1 ATATAAACGCTACCTATTACATT
* *
58056 ATATAAGCGCTACCTATTACATC
1 ATATAAACGCTACCTATTACATT
58079 ATAT
1 ATAT
58083 TTTTACCTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.36
Consensus pattern (23 bp):
ATATAAACGCTACCTATTACATT
Found at i:58535 original size:23 final size:23
Alignment explanation
Indices: 58500--58572 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
58490 ATACTTTACA
*
58500 ATATAAGCACTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
58523 ATATAAACGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
58546 ATATAAGCGCTACCTATTACATC
1 ATATAAGCGCTACCTATTACATT
58569 ATAT
1 ATAT
58573 TTTTACCTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.38, C:0.22, G:0.05, T:0.34
Consensus pattern (23 bp):
ATATAAGCGCTACCTATTACATT
Found at i:58624 original size:22 final size:22
Alignment explanation
Indices: 58590--58634 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
58580 TATTATATTG
*
58590 AAAGTATCCATACTTTTTATAA
1 AAAGGATCCATACTTTTTATAA
* *
58612 AAAGGATCGATACTTTTTTTAA
1 AAAGGATCCATACTTTTTATAA
58634 A
1 A
58635 GTTATGTAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.40, C:0.11, G:0.09, T:0.40
Consensus pattern (22 bp):
AAAGGATCCATACTTTTTATAA
Found at i:58928 original size:978 final size:976
Alignment explanation
Indices: 57608--59973 Score: 4291
Period size: 978 Copynumber: 2.4 Consensus size: 976
57598 TTATAATATG
*
57608 TTGAAAGTGTCTATACTTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGT
1 TTGAAAGTGTCCATAC-TTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGT
57673 TTCAATTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACAC
65 TTCAATTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACAC
* *
57738 AAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAAAAACATT
130 AAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATT
*
57803 AACCAAAGATAATAATAAATATGTAATATATATGTTTATTTTTTTTAATTTAATAATAATATATA
195 AACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATA
*
57868 CCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTATTAAATTAATATCTTAAAACTCACTC
260 CCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTC
* *
57933 AAAAGATAACATTAAATTAATGTTTTCCACAGTGAAAAAAATATGGACACTTTTATAAAAAGGAT
325 AAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGAT
*
57998 AAATACTTTACAATATAAGCACTACCTATTACATTATATAAACGTTACCTATTACATTATATAAG
390 AAATACTTTACAATATAAGCACTACCTATTACATTATATAAACGATACCTATTACATTATATAAG
*
58063 CGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAATGA
455 CGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGA
58128 TCGATACTTTTTTTAAAATTATGTAATTTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCC
520 TCGATACTTTTTTTAAAATTATGTAATTTATGTTTCAA-TTTTTTAATAGTGTTTCATGTTTTCC
* * *
58193 ACCTACAATATTAATTTAATAATTTCATTTGCAGAAACAATTATTTGATTGTTTTGATATTTTAT
584 ACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTAATTGTTTTGATATTTTAT
* *
58258 AAAATATTATTTAGTATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTAATATAT
649 AAAATAATATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTAATATAT
58323 ATGTTTATTGTTTTTTAATTTAATGATAATATATACCGTAACGTAAAAAATAAATCATTAGATAC
714 ATGTTTATTG-TTTTTAATTTAATGATAATATATACCGTAACGTAAAAAATAAATCATTAGATAC
* * *
58388 ATATAATTACTAAATTGATGTCTTAAAACTCACTCAAAAGATAACATTAAATTAATGTTTTCCAC
778 ATATAATTACTAAATTGATATCTTAAAACTCACTCAAAAGATAACATTAAATTAATATTTTACAC
58453 AGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTACCTATT
843 AGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTACCTATT
58518 ACATTATATAAACGCTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTAT
908 ACATTATATAAACGCTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTAT
58583 TATA
973 TATA
*
58587 TTGAAAGTATCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
58652 TCAATTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACA
66 TCAATTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACA
* *
58717 AAAAATTATTTAATTGTTTTAATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTA
131 AAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTA
* *
58782 ACCAAAGATAATAATAAATATGTATTATATATGTTTATTGTTTTTAATTTAATAATAATATATGC
196 ACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATAC
* * *
58847 CGCAACGTAAAAATTAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTAA
261 CGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCA
* * *
58912 AAAAATAACCTTAAATTAATATTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAATGATA
326 AAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATA
* *
58977 AATACTTTACAATATAAGCGCTACCTATTACATTATATAAACGATACCTATTATATTATATAAGC
391 AATACTTTACAATATAAGCACTACCTATTACATTATATAAACGATACCTATTACATTATATAAGC
59042 GCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGAT
456 GCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGAT
*
59107 CGATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTAATAGTGTTTCATGTTTTCCAC
521 CGATACTTTTTTTAAAATTATGTAATTTATGTTTCAATTTTTTAATAGTGTTTCATGTTTTCCAC
*
59172 CTACAATATTAATTTAATAATTTCATTTGTACAAAAAATTATTTAATTGTTTTGATATTTTATAA
586 CTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTAATTGTTTTGATATTTTATAA
59237 AATAATATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTAATATATAT
651 AATAATATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTAATATATAT
59302 GTTTATTGTTTTTAATTTAATGATAATATATACCGTAACGTAAAAAATAAATCATTAGATACATA
716 GTTTATTGTTTTTAATTTAATGATAATATATACCGTAACGTAAAAAATAAATCATTAGATACATA
*
59367 TAATTACTAAATTGATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATATTTTACACAGT
781 TAATTACTAAATTGATATCTTAAAACTCACTCAAAAGATAACATTAAATTAATATTTTACACAGT
* * *
59432 GAAAAAAGTATTGTCACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTATCTATTACA
846 GAAAAAAGTATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTACCTATTACA
59497 TTATATAAACGCTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTAT
911 TTATATAAACGCTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTAT
59562 A
976 A
59563 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAAGTTATGTAATTTATGT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTT-AAAGTTATGTAATTTATGT
* * *
59628 TTCAATTTTTTTTAACAATGTTTCATATTTTCCACCTACAATATTAATTTAATAATTTCATTTAC
65 TTCAA--TTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTAC
*
59693 ACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATA
128 ACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATA
*
59758 TTAACCAAAGATAATAATAAATATGTAATATATATTTTTATTGTTTTTAATTTAATAATAATATA
193 TTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATA
59823 TACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCAC
258 TACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCAC
59888 TCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGGAAAAAAGTATGGACACTTTTATAAAAAG
323 TCAAAAGATAACCTTAAATTAATGTTTTCCACAGT-GAAAAAAGTATGGACACTTTTATAAAAAG
*
59953 GATAAATATTTTACAATATAA
387 GATAAATACTTTACAATATAA
59974 CAGGTAAAAA
Statistics
Matches: 1330, Mismatches: 53, Indels: 7
0.96 0.04 0.01
Matches are distributed among these distances:
976 290 0.22
977 184 0.14
978 520 0.39
979 288 0.22
980 48 0.04
ACGTcount: A:0.41, C:0.11, G:0.07, T:0.41
Consensus pattern (976 bp):
TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
TCAATTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACA
AAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTA
ACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATAC
CGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCA
AAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATA
AATACTTTACAATATAAGCACTACCTATTACATTATATAAACGATACCTATTACATTATATAAGC
GCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGAT
CGATACTTTTTTTAAAATTATGTAATTTATGTTTCAATTTTTTAATAGTGTTTCATGTTTTCCAC
CTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTAATTGTTTTGATATTTTATAA
AATAATATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTAATATATAT
GTTTATTGTTTTTAATTTAATGATAATATATACCGTAACGTAAAAAATAAATCATTAGATACATA
TAATTACTAAATTGATATCTTAAAACTCACTCAAAAGATAACATTAAATTAATATTTTACACAGT
GAAAAAAGTATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTACCTATTACA
TTATATAAACGCTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTAT
A
Found at i:59024 original size:23 final size:23
Alignment explanation
Indices: 58988--59060 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
58978 ATACTTTACA
58988 ATATAAGCGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
* * *
59011 ATATAAACGATACCTATTATATT
1 ATATAAGCGCTACCTATTACATT
*
59034 ATATAAGCGCTACCTATTACATC
1 ATATAAGCGCTACCTATTACATT
59057 ATAT
1 ATAT
59061 TTTTACCTAT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 43 1.00
ACGTcount: A:0.38, C:0.19, G:0.07, T:0.36
Consensus pattern (23 bp):
ATATAAGCGCTACCTATTACATT
Found at i:59027 original size:488 final size:488
Alignment explanation
Indices: 57608--59973 Score: 4156
Period size: 488 Copynumber: 4.8 Consensus size: 488
57598 TTATAATATG
*
57608 TTGAAAGTGTCTATACTTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGT
1 TTGAAAGTGTCCATAC-TTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGT
57673 TTCAATTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACAC
65 TTCAATTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACAC
* *
57738 AAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAAAAACATT
130 AAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATT
*
57803 AACCAAAGATAATAATAAATATGTAATATATATGTTTATTTTTTTTAATTTAATAATAATATATA
195 AACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATA
*
57868 CCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTATTAAATTAATATCTTAAAACTCACTC
260 CCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTC
* *
57933 AAAAGATAACATTAAATTAATGTTTTCCACAGTGAAAAAAATATGGACACTTTTATAAAAAGGAT
325 AAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGAT
*
57998 AAATACTTTACAATATAAGCACTACCTATTACATTATATAAACGTTACCTATTACATTATATAAG
390 AAATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAAG
58063 CGCTACCTATTACATCATATTTTTACCTATTATA
455 CGCTACCTATTACATCATATTTTTACCTATTATA
* *
58097 TTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTTTTTTAAAATTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
* *
58162 TCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCAG
66 TCAA-TTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACAC
* *
58227 AAACAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATATT
130 AAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATT
*
58292 AACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTTAATTTAATGATAATATAT
195 AACCAAAGATAATAATAAATATGTAATATATATGTTTATTG-TTTTTAATTTAATAATAATATAT
** * * *
58357 ACCGTAACGTAAAAAATAAATCATTAGATACATATAATTACTAAATTGATGTCTTAAAACTCACT
259 ACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
*
58422 CAAAAGATAACATTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGA
324 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGA
*
58487 TAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAA
389 TAAATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAA
58552 GCGCTACCTATTACATCATATTTTTACCTATTATA
454 GCGCTACCTATTACATCATATTTTTACCTATTATA
*
58587 TTGAAAGTATCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
58652 TCAATTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACA
66 TCAATTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACA
* *
58717 AAAAATTATTTAATTGTTTTAATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTA
131 AAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTA
* *
58782 ACCAAAGATAATAATAAATATGTATTATATATGTTTATTGTTTTTAATTTAATAATAATATATGC
196 ACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATAC
* * *
58847 CGCAACGTAAAAATTAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTAA
261 CGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCA
* * *
58912 AAAAATAACCTTAAATTAATATTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAATGATA
326 AAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATA
* * *
58977 AATACTTTACAATATAAGCGCTACCTATTACATTATATAAACGATACCTATTATATTATATAAGC
391 AATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAAGC
59042 GCTACCTATTACATCATATTTTTACCTATTATA
456 GCTACCTATTACATCATATTTTTACCTATTATA
59075 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
**
59140 TCAATTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGTACA
66 TCAATTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACA
* *
59205 AAAAATTATTTAATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATATTA
131 AAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTA
*
59270 ACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATGATAATATATAC
196 ACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATAC
** * *
59335 CGTAACGTAAAAAATAAATCATTAGATACATATAATTACTAAATTGATATCTTAAAACTCACTCA
261 CGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCA
* * * *
59400 AAAGATAACCTTAAATTAATATTTTACACAGTGAAAAAAGTATTGTCACTTTTATAAAAAGGATA
326 AAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATA
* *
59465 GATACTTTACAATATAAGCACTATCTATTACATTATATAAACGCTACCTATTACATTATATAAGC
391 AATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAAGC
59530 GCTACCTATTACATCATATTTTTACCTATTATA
456 GCTACCTATTACATCATATTTTTACCTATTATA
59563 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAAGTTATGTAATTTATGT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTT-AAAGTTATGTAATTTATGT
* * *
59628 TTCAATTTTTTTTAACAATGTTTCATATTTTCCACCTACAATATTAATTTAATAATTTCATTTAC
65 TTCAA--TTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTAC
*
59693 ACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATA
128 ACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATA
*
59758 TTAACCAAAGATAATAATAAATATGTAATATATATTTTTATTGTTTTTAATTTAATAATAATATA
193 TTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATA
59823 TACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCAC
258 TACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCAC
59888 TCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGGAAAAAAGTATGGACACTTTTATAAAAAG
323 TCAAAAGATAACCTTAAATTAATGTTTTCCACAGT-GAAAAAAGTATGGACACTTTTATAAAAAG
*
59953 GATAAATATTTTACAATATAA
387 GATAAATACTTTACAATATAA
59974 CAGGTAAAAA
Statistics
Matches: 1778, Mismatches: 93, Indels: 9
0.95 0.05 0.00
Matches are distributed among these distances:
488 794 0.45
489 357 0.20
490 309 0.17
491 272 0.15
492 46 0.03
ACGTcount: A:0.41, C:0.11, G:0.07, T:0.41
Consensus pattern (488 bp):
TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
TCAATTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACA
AAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTA
ACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATAC
CGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCA
AAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATA
AATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAAGC
GCTACCTATTACATCATATTTTTACCTATTATA
Found at i:59501 original size:21 final size:23
Alignment explanation
Indices: 59476--59548 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
59466 ATACTTTACA
* *
59476 ATATAAGCACTATCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
59499 ATATAAACGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
59522 ATATAAGCGCTACCTATTACATC
1 ATATAAGCGCTACCTATTACATT
59545 ATAT
1 ATAT
59549 TTTTACCTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.36
Consensus pattern (23 bp):
ATATAAGCGCTACCTATTACATT
Found at i:64166 original size:2 final size:2
Alignment explanation
Indices: 64161--64187 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
64151 TGTGTGTGTG
64161 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
64188 TCCCATTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:67380 original size:25 final size:25
Alignment explanation
Indices: 67347--67400 Score: 108
Period size: 25 Copynumber: 2.2 Consensus size: 25
67337 TGCTAAGTAC
67347 AAAAACTAACAAGGTAAAGGAAAAG
1 AAAAACTAACAAGGTAAAGGAAAAG
67372 AAAAACTAACAAGGTAAAGGAAAAG
1 AAAAACTAACAAGGTAAAGGAAAAG
67397 AAAA
1 AAAA
67401 CAAGGGATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.67, C:0.07, G:0.19, T:0.07
Consensus pattern (25 bp):
AAAAACTAACAAGGTAAAGGAAAAG
Found at i:67995 original size:23 final size:23
Alignment explanation
Indices: 67969--68019 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
67959 AATAACATAT
* * **
67969 TAGGTATCGTTTATATAATGTAA
1 TAGGTAGCGCTTATATAATAAAA
67992 TAGGTAGCGCTTATATAATAAAA
1 TAGGTAGCGCTTATATAATAAAA
68015 TAGGT
1 TAGGT
68020 TAATTACTGC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.37, C:0.06, G:0.20, T:0.37
Consensus pattern (23 bp):
TAGGTAGCGCTTATATAATAAAA
Found at i:68073 original size:23 final size:23
Alignment explanation
Indices: 68047--68106 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 23
68037 ATCAAGCACA
*
68047 ATAATATATTAGGTAAAACTTAT
1 ATAATATAATAGGTAAAACTTAT
* ***
68070 ATAATGTAATAGGTAGTGCTTAT
1 ATAATATAATAGGTAAAACTTAT
*
68093 ATAATAAAATAGGT
1 ATAATATAATAGGT
68107 TAATTACTGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.45, C:0.03, G:0.15, T:0.37
Consensus pattern (23 bp):
ATAATATAATAGGTAAAACTTAT
Found at i:68093 original size:87 final size:87
Alignment explanation
Indices: 67947--68199 Score: 344
Period size: 87 Copynumber: 2.9 Consensus size: 87
67937 AACCGGAAAT
* * * * ** *
67947 ATTATCAAACATAATAACATATTAGGTATCGTTTATATAATGTAATAGGTAGCGCTTATATAATA
1 ATTATCAAGCACAATAATATATTAGGTAACACTTATATAATGTAATAGGTAGTGCTTATATAATA
*
68012 AAATAGGTTAATTACTGCAACC
66 AAATAGGTTAATTACTGCAAAC
*
68034 ATTATCAAGCACAATAATATATTAGGTAAAACTTATATAATGTAATAGGTAGTGCTTATATAATA
1 ATTATCAAGCACAATAATATATTAGGTAACACTTATATAATGTAATAGGTAGTGCTTATATAATA
* *
68099 AAATAGGTTAATTACTGGAAAT
66 AAATAGGTTAATTACTGCAAAC
* * * ** *
68121 ATTATCAAGCACAATAATATATTATGTAGCACTTATATAACGTAATAATTAGTGTTTATATAATA
1 ATTATCAAGCACAATAATATATTAGGTAACACTTATATAATGTAATAGGTAGTGCTTATATAATA
*
68186 AAATATGTTAATTA
66 AAATAGGTTAATTA
68200 TTTAATTTGT
Statistics
Matches: 147, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
87 147 1.00
ACGTcount: A:0.43, C:0.09, G:0.12, T:0.36
Consensus pattern (87 bp):
ATTATCAAGCACAATAATATATTAGGTAACACTTATATAATGTAATAGGTAGTGCTTATATAATA
AAATAGGTTAATTACTGCAAAC
Found at i:68625 original size:23 final size:23
Alignment explanation
Indices: 68575--68619 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
68565 AACATATTTT
* *
68575 ATTATATAAGTGCTACCTATTAC
1 ATTATATAAGCGCTACCTAATAC
*
68598 ATTATATAAGCGGTACCTAATA
1 ATTATATAAGCGCTACCTAATA
68620 TGTTATTATG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.36
Consensus pattern (23 bp):
ATTATATAAGCGCTACCTAATAC
Found at i:68679 original size:23 final size:23
Alignment explanation
Indices: 68653--68737 Score: 134
Period size: 23 Copynumber: 3.7 Consensus size: 23
68643 CTAATAATTA
**
68653 ACCTATTTTATTATATAAGCGCT
1 ACCTATTACATTATATAAGCGCT
68676 ACCTATTACATTATATAAGCGCT
1 ACCTATTACATTATATAAGCGCT
*
68699 ACATATTACATTATATAAGCGCT
1 ACCTATTACATTATATAAGCGCT
*
68722 ACCTATTACATCATAT
1 ACCTATTACATTATAT
68738 TTTTACCTGT
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 57 1.00
ACGTcount: A:0.35, C:0.20, G:0.07, T:0.38
Consensus pattern (23 bp):
ACCTATTACATTATATAAGCGCT
Found at i:69419 original size:11 final size:11
Alignment explanation
Indices: 69400--69433 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
69390 ATCCGGTAAT
69400 GCCGTATATTA
1 GCCGTATATTA
*
69411 GCTGTATATTA
1 GCCGTATATTA
*
69422 ACCGTATATTA
1 GCCGTATATTA
69433 G
1 G
69434 TCATCTTTCC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (11 bp):
GCCGTATATTA
Found at i:73803 original size:10 final size:10
Alignment explanation
Indices: 73790--73817 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
73780 AACACAAGCG
73790 AACGAACATA
1 AACGAACATA
73800 AACGAACATA
1 AACGAACATA
73810 AACGAACA
1 AACGAACA
73818 CAATAAACGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.61, C:0.21, G:0.11, T:0.07
Consensus pattern (10 bp):
AACGAACATA
Found at i:73805 original size:24 final size:23
Alignment explanation
Indices: 73773--73847 Score: 73
Period size: 24 Copynumber: 3.3 Consensus size: 23
73763 CATTTAAATG
*
73773 ATAAACGAACACAAGCGAACGA-A
1 ATAAACGAACACAAACGAAC-ACA
*
73796 CATAAACGAACATAAACGAACACA
1 -ATAAACGAACACAAACGAACACA
* *
73820 ATAAACGAACA-AGACAAACACA
1 ATAAACGAACACAAACGAACACA
*
73842 AAAAAC
1 ATAAAC
73848 AAACTTATTC
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
22 14 0.31
23 12 0.27
24 19 0.42
ACGTcount: A:0.61, C:0.23, G:0.11, T:0.05
Consensus pattern (23 bp):
ATAAACGAACACAAACGAACACA
Found at i:73842 original size:22 final size:23
Alignment explanation
Indices: 73797--73865 Score: 68
Period size: 23 Copynumber: 3.0 Consensus size: 23
73787 GCGAACGAAC
*
73797 ATAAACGAACATAAACGAACACA
1 ATAAACGAACATAAACAAACACA
*
73820 ATAAACGAACA-AGACAAACACA
1 ATAAACGAACATAAACAAACACA
* * * **
73842 AAAAACAAACTTATTCAAACACA
1 ATAAACGAACATAAACAAACACA
73865 A
1 A
73866 CAAATGAATG
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
22 17 0.45
23 21 0.55
ACGTcount: A:0.62, C:0.22, G:0.06, T:0.10
Consensus pattern (23 bp):
ATAAACGAACATAAACAAACACA
Found at i:76791 original size:3 final size:3
Alignment explanation
Indices: 76785--76852 Score: 91
Period size: 3 Copynumber: 22.0 Consensus size: 3
76775 ATTTTAAAAT
* *
76785 TTA TTA TTA TTA TTA TTA TTA TTA TTA TAA TTA TTA TTA TTA TTA ATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
76833 TATA TTA TTTA TTA ATA TTA
1 T-TA TTA -TTA TTA TTA TTA
76853 CAAAACCCAA
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
3 51 0.89
4 6 0.11
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:78415 original size:10 final size:10
Alignment explanation
Indices: 78395--78430 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
78385 CTAGTATTTT
78395 AAAAT-TAAA
1 AAAATATAAA
*
78404 AAAGTATAAA
1 AAAATATAAA
78414 AAAATATAAA
1 AAAATATAAA
78424 AAAATAT
1 AAAATAT
78431 TATTTAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
9 4 0.17
10 20 0.83
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (10 bp):
AAAATATAAA
Found at i:80536 original size:26 final size:27
Alignment explanation
Indices: 80502--80556 Score: 85
Period size: 26 Copynumber: 2.0 Consensus size: 27
80492 TTTGCATTTG
*
80502 TACATTTTTACGTTTG-TATTTACATT
1 TACATTTTTACCTTTGATATTTACATT
80528 TACATTTTTACCTTTGCATATTTACATT
1 TACATTTTTACCTTTG-ATATTTACATT
80556 T
1 T
80557 GGCATCTTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 15 0.58
28 11 0.42
ACGTcount: A:0.24, C:0.15, G:0.05, T:0.56
Consensus pattern (27 bp):
TACATTTTTACCTTTGATATTTACATT
Found at i:80557 original size:14 final size:14
Alignment explanation
Indices: 80518--80571 Score: 54
Period size: 14 Copynumber: 3.8 Consensus size: 14
80508 TTTACGTTTG
*
80518 TATTTACATTTACA
1 TATTTACATTTGCA
* *
80532 TTTTTACCTTTGCA
1 TATTTACATTTGCA
80546 TATTTACATTTGGCA
1 TATTTACATTT-GCA
* *
80561 TCTTTGCATTT
1 TATTTACATTT
80572 TTTATGTCAT
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
14 20 0.62
15 12 0.38
ACGTcount: A:0.22, C:0.17, G:0.07, T:0.54
Consensus pattern (14 bp):
TATTTACATTTGCA
Found at i:83148 original size:16 final size:16
Alignment explanation
Indices: 83114--83160 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
83104 CTCATCCAAC
83114 AAAGAAAGAA-GAAAGAA
1 AAAGAAA-AAGGAAA-AA
*
83131 AAA-AAAAGGGAAAAA
1 AAAGAAAAAGGAAAAA
83146 AAAGAAAAAGGAAAA
1 AAAGAAAAAGGAAAA
83161 TTGAATCAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
15 6 0.23
16 17 0.65
17 3 0.12
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (16 bp):
AAAGAAAAAGGAAAAA
Found at i:85698 original size:92 final size:92
Alignment explanation
Indices: 85429--85687 Score: 455
Period size: 92 Copynumber: 2.8 Consensus size: 92
85419 AGGAGACCCA
* *
85429 ATAGCATCTTCTCGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCACAAAACCAAT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCACAGAACCAAT
*
85494 CATTGAATTTGGAAGATAAATGTGCTC
66 CATTGAATTTGGAAGATGAATGTGCTC
* *
85521 ATAGCATCTTTTGGAAGTGTTCTTTGAGTTATCTGATCTAGTTTGGTATGAACCACAGAACCAAT
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCACAGAACCAAT
85586 CATTGAATTTGGAAGATGAATGTGCTC
66 CATTGAATTTGGAAGATGAATGTGCTC
*
85613 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCACAGAACCAAC
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCACAGAACCAAT
85678 CATTGGAATT
66 CATT-GAATT
85688 AAAAGATGAA
Statistics
Matches: 158, Mismatches: 8, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
92 153 0.97
93 5 0.03
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.35
Consensus pattern (92 bp):
ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCACAGAACCAAT
CATTGAATTTGGAAGATGAATGTGCTC
Found at i:86611 original size:41 final size:40
Alignment explanation
Indices: 86561--86670 Score: 105
Period size: 42 Copynumber: 2.6 Consensus size: 40
86551 ACATTGAGAG
86561 TCAACCAGAAACAGAATATTGGGGCATCTCGAA-AGCCCATT
1 TCAACCAGAAA-AGAATATTGGGGCATCTCGAAGA-CCCATT
* * ** * * *
86602 TCAAACAGAAATGTTTCATGTGGGACATCTTGAGGACCCATT
1 TCAACCAGAAAAGAAT-AT-TGGGGCATCTCGAAGACCCATT
86644 TCAACCAGAAATAGAATATTGGGGCAT
1 TCAACCAGAAA-AGAATATTGGGGCAT
86671 TTTGAAGGCT
Statistics
Matches: 53, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
40 2 0.04
41 19 0.36
42 29 0.55
43 3 0.06
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (40 bp):
TCAACCAGAAAAGAATATTGGGGCATCTCGAAGACCCATT
Found at i:88007 original size:50 final size:53
Alignment explanation
Indices: 87892--88038 Score: 203
Period size: 54 Copynumber: 2.8 Consensus size: 53
87882 AGAAATCTTG
87892 GCAGAAGCCACAGAAAAGGATGAATGTGTTGTCAAATGTTTTACAAACGTCTGA
1 GCAGAAGCCACAGAAAA-GATGAATGTGTTGTCAAATGTTTTACAAACGTCTGA
* *
87946 GCAGAAGCCACAGAAAAGAATGAATGTGTTGTCAAGTGTTTTAC-ATC-TC-GA
1 GCAGAAGCCACAGAAAAG-ATGAATGTGTTGTCAAATGTTTTACAAACGTCTGA
* *
87997 -CAGAAACCACAGGAAAAGATGAATGTATTGTCAAATGTTTTA
1 GCAGAAGCCACA-GAAAAGATGAATGTGTTGTCAAATGTTTTA
88039 TGAACCAGTG
Statistics
Matches: 86, Mismatches: 5, Indels: 8
0.87 0.05 0.08
Matches are distributed among these distances:
50 32 0.37
51 8 0.09
52 2 0.02
53 3 0.03
54 41 0.48
ACGTcount: A:0.38, C:0.14, G:0.22, T:0.25
Consensus pattern (53 bp):
GCAGAAGCCACAGAAAAGATGAATGTGTTGTCAAATGTTTTACAAACGTCTGA
Found at i:88439 original size:22 final size:22
Alignment explanation
Indices: 88410--88464 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
88400 ATCTACACTC
*
88410 TTCAAAGATGATAGATTCTCTT
1 TTCAAAGATGACAGATTCTCTT
* *
88432 TTTAAAGATAACAGATTCTCTT
1 TTCAAAGATGACAGATTCTCTT
88454 TTCAAAGATGA
1 TTCAAAGATGA
88465 AAACTTTATG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (22 bp):
TTCAAAGATGACAGATTCTCTT
Found at i:89062 original size:113 final size:113
Alignment explanation
Indices: 88864--89767 Score: 1691
Period size: 113 Copynumber: 8.0 Consensus size: 113
88854 TAGCAAAGAT
88864 TCAAATCCATCATCTGATGGATCAGCTTTTCCAGAAAAAGTTCATAATGAGAAGAACTCATCTGA
1 TCAAATCCATCATCTGATGGATCAGCTTTTCCAGAAAAAGTTCATAATGAGAAGAACTCATCTGA
88929 AGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGC
66 AGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGC
*
88977 TCAAATCTATCATCTGATGGATCAGCTTTTCCAGAAAAAGTTCATAATGAGAAGAACTCATCTGA
1 TCAAATCCATCATCTGATGGATCAGCTTTTCCAGAAAAAGTTCATAATGAGAAGAACTCATCTGA
89042 AGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGC
66 AGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGC
89090 TCAAATCCATCATCTGATGGATCAGCTTTTCCAGAAAAAGTTCATAATGAGAAGAACTCATCTGA
1 TCAAATCCATCATCTGATGGATCAGCTTTTCCAGAAAAAGTTCATAATGAGAAGAACTCATCTGA
* *
89155 ATAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTTAACCTTTTGC
66 AGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGC
89203 TCAAATCCATCATCTGATGGATCAGCTTTTCCAGAAAAAGTTCATAATGAGAAGAACTCATCTGA
1 TCAAATCCATCATCTGATGGATCAGCTTTTCCAGAAAAAGTTCATAATGAGAAGAACTCATCTGA
89268 AGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGC
66 AGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGC
89316 TCAAATCCATCATCTGATGGATCAGCTTTTCCAGAAAAAGTTCATAATGAGAAGAACTCATCTGA
1 TCAAATCCATCATCTGATGGATCAGCTTTTCCAGAAAAAGTTCATAATGAGAAGAACTCATCTGA
89381 AGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGC
66 AGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGC
89429 TCAAATCCATCATCTGATGGATCAGCTTTTCCAGAAAAAGTTCATAATGAGAAGAACTCATCTGA
1 TCAAATCCATCATCTGATGGATCAGCTTTTCCAGAAAAAGTTCATAATGAGAAGAACTCATCTGA
* *
89494 AGAAGGAATAAGAAATTCATAATGAGAAGAATTTGTTTAACCTTTTGC
66 AGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGC
* *
89542 TCAAATCCATCATCTGATGGATCAGCTTTTCCCGAAAAAGTTCATAATGAGAAGAACTTATCTGA
1 TCAAATCCATCATCTGATGGATCAGCTTTTCCAGAAAAAGTTCATAATGAGAAGAACTCATCTGA
*
89607 TGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGC
66 AGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGC
* * *
89655 TCAAATCCATCATCTGATGGATCAACTTTTCCAGAGAAAGTTCATAATAAGAAGAACTCATCTGA
1 TCAAATCCATCATCTGATGGATCAGCTTTTCCAGAAAAAGTTCATAATGAGAAGAACTCATCTGA
* *
89720 AGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGC
66 AGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGC
89768 ATAATTCTAT
Statistics
Matches: 770, Mismatches: 21, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
113 770 1.00
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Consensus pattern (113 bp):
TCAAATCCATCATCTGATGGATCAGCTTTTCCAGAAAAAGTTCATAATGAGAAGAACTCATCTGA
AGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGC
Found at i:89901 original size:124 final size:124
Alignment explanation
Indices: 89675--89908 Score: 369
Period size: 124 Copynumber: 1.9 Consensus size: 124
89665 CATCTGATGG
* * *
89675 ATCAACTTTTCCAGAGAAAGTTCATAATAAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCAT
1 ATCAACCTTTCCAGAGAAAGTTCATAATAAGAAGAACTCATCTGAAGAAGAAAGAAAAAGTTCAT
* * * * *
89740 AATGAGAAGAACTTGTTCAACCTTTTGCATAATTCTATTACAGAAAGAGATAGATTAGC
66 AATGAAAAGAACTTATTCAACCTTTTGAATAACTCTATCACAGAAAGAGATAGATTAGC
* *
89799 ATCAACCTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGGAGAAAGAAAAAGTTCAT
1 ATCAACCTTTCCAGAGAAAGTTCATAATAAGAAGAACTCATCTGAAGAAGAAAGAAAAAGTTCAT
*
89864 AATGAAAAGAACTTATTCAACCTTTTGAATGACTCTATCACAGAA
66 AATGAAAAGAACTTATTCAACCTTTTGAATAACTCTATCACAGAA
89909 GGAAATAGGT
Statistics
Matches: 99, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
124 99 1.00
ACGTcount: A:0.43, C:0.15, G:0.17, T:0.26
Consensus pattern (124 bp):
ATCAACCTTTCCAGAGAAAGTTCATAATAAGAAGAACTCATCTGAAGAAGAAAGAAAAAGTTCAT
AATGAAAAGAACTTATTCAACCTTTTGAATAACTCTATCACAGAAAGAGATAGATTAGC
Found at i:89926 original size:124 final size:124
Alignment explanation
Indices: 89675--89956 Score: 363
Period size: 124 Copynumber: 2.3 Consensus size: 124
89665 CATCTGATGG
* * * *
89675 ATCAACTTTTCCAGAGAAAGTTCATAATAAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCAT
1 ATCAACCTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAAGAAAAAGTTCAT
* * * * * * * *
89740 AATGAGAAGAACTTGTTCAACCTTTTGCATAATTCTATTACAGAAAGAGATAGATTAGC
66 AATGAAAAGAACTTATTCAACCTTTTGAATAACTCTATCACAGAAAGAAATAGATCAAC
*
89799 ATCAACCTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGGAGAAAGAAAAAGTTCAT
1 ATCAACCTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAAGAAAAAGTTCAT
* * *
89864 AATGAAAAGAACTTATTCAACCTTTTGAATGACTCTATCACAGAAGGAAATAGGTCAAC
66 AATGAAAAGAACTTATTCAACCTTTTGAATAACTCTATCACAGAAAGAAATAGATCAAC
* *
89923 ATCATCC---CCAGCGGAAAAGTTCATAATGAGAAGA
1 ATCAACCTTTCCAG-AG-AAAGTTCATAATGAGAAGA
89957 GCTAATCCCA
Statistics
Matches: 138, Mismatches: 18, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
121 4 0.03
122 1 0.01
123 19 0.14
124 114 0.83
ACGTcount: A:0.43, C:0.16, G:0.18, T:0.24
Consensus pattern (124 bp):
ATCAACCTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAAGAAAAAGTTCAT
AATGAAAAGAACTTATTCAACCTTTTGAATAACTCTATCACAGAAAGAAATAGATCAAC
Found at i:90119 original size:3 final size:3
Alignment explanation
Indices: 90113--90168 Score: 67
Period size: 3 Copynumber: 18.0 Consensus size: 3
90103 ATTTTAAAAT
* *
90113 TTA TTA TTA TTA TTA TTA TTA TAA TTA TTA TTA ATA TATA TTA TTTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA -TTA
*
90160 TTA ATA TTA
1 TTA TTA TTA
90169 CACAACCCAA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
3 39 0.87
4 6 0.13
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:91713 original size:10 final size:10
Alignment explanation
Indices: 91695--91724 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
91685 GTATTTTAAA
91695 ATAAAAAAAGT
1 ATAAAAAAA-T
91706 ATAAAAAAAT
1 ATAAAAAAAT
91716 ATAAAAAAA
1 ATAAAAAAA
91725 ATATTATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.53
11 9 0.47
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (10 bp):
ATAAAAAAAT
Found at i:91725 original size:11 final size:11
Alignment explanation
Indices: 91695--91728 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
91685 GTATTTTAAA
*
91695 ATAAAAAAAGT
1 ATAAAAAAAAT
91706 AT-AAAAAAAT
1 ATAAAAAAAAT
91716 ATAAAAAAAAT
1 ATAAAAAAAAT
91727 AT
1 AT
91729 TATTTAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 9 0.43
11 12 0.57
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (11 bp):
ATAAAAAAAAT
Found at i:105049 original size:11 final size:12
Alignment explanation
Indices: 105028--105060 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
105018 GAAAATAAAT
105028 TTTTTTATTATA
1 TTTTTTATTATA
105040 TTTTTT-TTATA
1 TTTTTTATTATA
105051 TTTTATTATT
1 TTTT-TTATT
105061 TGACTAACCT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 9 0.47
12 8 0.42
13 2 0.11
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTTTTATTATA
Found at i:106722 original size:25 final size:25
Alignment explanation
Indices: 106693--106740 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 25
106683 TAATTAGGCC
106693 AATAATTCATG-TTAGT-TTAATATAT
1 AATAATT-ATGATT-GTCTTAATATAT
106718 AATAATTATGATTGTCTTAATAT
1 AATAATTATGATTGTCTTAATAT
106741 GGGAAAAGCA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 5 0.24
25 16 0.76
ACGTcount: A:0.40, C:0.04, G:0.08, T:0.48
Consensus pattern (25 bp):
AATAATTATGATTGTCTTAATATAT
Found at i:108812 original size:2 final size:2
Alignment explanation
Indices: 108805--108833 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
108795 TGCCCATCGT
108805 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
108834 TAATAATAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:114515 original size:21 final size:21
Alignment explanation
Indices: 114491--114530 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
114481 CTTTAGGAGA
*
114491 AGGGATCGATCATTTTCATCG
1 AGGGATCAATCATTTTCATCG
114512 AGGGATCAATCATTTTCAT
1 AGGGATCAATCATTTTCAT
114531 TGATAGATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (21 bp):
AGGGATCAATCATTTTCATCG
Found at i:114558 original size:254 final size:254
Alignment explanation
Indices: 114109--114582 Score: 760
Period size: 254 Copynumber: 1.9 Consensus size: 254
114099 TCATTAATGG
* *
114109 TCAATTATAGTCGTTACTTATAGTTAAAAACAACATTTAAACACAATGGATCAACTCTTTTGTGA
1 TCAATTATAGTCGTTACCTATAGTTAAAAACAACATTTAAACACAAGGGATCAACTCTTTTGTGA
*
114174 AAGGGATTGATTATTTTTCAAATAATTCGACCGTTACAAGAAATGGATTGATCCTTTAGGAGAAT
66 AAGGGATTGATCATTTTTCAAATAATTCGACCGTTACAAGAAATGGATTGATCCTTTAGGAGAAT
* *
114239 GGGTCGATTCTTTTCACCGAGGGATCAATCCTATTCATTGATAGATTGATAATTTTATGAAATGA
131 GGGTCGATTCTTTTCACCGAGGGATCAATCATATTCATTGATAGATTGATAATTTGATGAAATGA
114304 TTAATCCAAAACTTACTAGAATCCATTACACAAGGGATTGATTATTTAGTCGTTGAGGT
196 TTAATCCAAAACTTACTAGAATCCATTACACAAGGGATTGATTATTTAGTCGTTGAGGT
114363 TCAATTATAGTCGTTACCTATAGTTAAAAACAACATTTAATACACAAGGGATCAA-TCCTTTTGT
1 TCAATTATAGTCGTTACCTATAGTTAAAAACAACATTTAA-ACACAAGGGATCAACT-CTTTTGT
* *
114427 GAAAGGGATTGATCATTTTTCAAATAATTCGATCGTTACAATAAA-GTGATTGAT-CTTTAGGAG
64 GAAAGGGATTGATCATTTTTCAAATAATTCGACCGTTACAAGAAATG-GATTGATCCTTTAGGAG
* * ** *
114490 AA-GGGATCGA-TCATTTTCATCGAGGGATCAATCATTTTCATTGATAGATTGATTCTTTGGTGA
128 AATGGG-TCGATTC-TTTTCACCGAGGGATCAATCATATTCATTGATAGATTGATAATTTGATGA
114553 AATGATTAATCCAAAACTTACTAGAATCCA
191 AATGATTAATCCAAAACTTACTAGAATCCA
114583 AGGGATCGAT
Statistics
Matches: 203, Mismatches: 12, Indels: 10
0.90 0.05 0.04
Matches are distributed among these distances:
253 5 0.02
254 129 0.64
255 69 0.34
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.35
Consensus pattern (254 bp):
TCAATTATAGTCGTTACCTATAGTTAAAAACAACATTTAAACACAAGGGATCAACTCTTTTGTGA
AAGGGATTGATCATTTTTCAAATAATTCGACCGTTACAAGAAATGGATTGATCCTTTAGGAGAAT
GGGTCGATTCTTTTCACCGAGGGATCAATCATATTCATTGATAGATTGATAATTTGATGAAATGA
TTAATCCAAAACTTACTAGAATCCATTACACAAGGGATTGATTATTTAGTCGTTGAGGT
Found at i:114778 original size:205 final size:204
Alignment explanation
Indices: 114405--114787 Score: 626
Period size: 205 Copynumber: 1.9 Consensus size: 204
114395 ACATTTAATA
* *
114405 CACAAGGGATCAATCCTTTTGTGAAAGGGATTGATCATTTTTCAAATAATTCGATCGTTACAATA
1 CACAAGGGATCAATCCTTTTGTGAAAGGGATTGATCATTTTTCAAATAATTCGACCGTTACAAGA
* * *
114470 AAGTGATTGATCTTTAGGAGAAGGGATCGATCATTTTCATCGAGGGATCAATCATTTTCATTGAT
66 AAGGGATTGATCTTTAGGAGAAGGGATCGATCATTTTCACCGAGGGATCAAACATTTTCATTGAT
*
114535 AGATTGATTCTTTGGTGAAATGATTAATCCAAAACTTACTAGAATCCAAGGGATCGATCATTTGA
131 AGATTGATTCTTTGATGAAATGATTAATCCAAAACTTACTAGAATCCAAGGGATCGATCATTTGA
114600 GCAAACAAT
196 GCAAACAAT
* *
114609 CACAAGGGATCAATTCTTTTGTGAAAGGGATTGATTATTTTTCAAATAATTCGACCGTTACAAGA
1 CACAAGGGATCAATCCTTTTGTGAAAGGGATTGATCATTTTTCAAATAATTCGACCGTTACAAGA
* *
114674 AAGGGATTGATATTTTAGGAGAATGGG-TCGATCTTTTTCACCGAGGGATCAAACATTTTCATTG
66 AAGGGATTGAT-CTTTAGGAGAA-GGGATCGATCATTTTCACCGAGGGATCAAACATTTTCATTG
*
114738 ATAGATTGATTAGTTT-ATGAAATGATTAATCCAAAACTTACTAGAATCCA
129 ATAGATTGATT-CTTTGATGAAATGATTAATCCAAAACTTACTAGAATCCA
114788 TTACACAAGG
Statistics
Matches: 165, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
204 71 0.43
205 88 0.53
206 6 0.04
ACGTcount: A:0.34, C:0.14, G:0.19, T:0.33
Consensus pattern (204 bp):
CACAAGGGATCAATCCTTTTGTGAAAGGGATTGATCATTTTTCAAATAATTCGACCGTTACAAGA
AAGGGATTGATCTTTAGGAGAAGGGATCGATCATTTTCACCGAGGGATCAAACATTTTCATTGAT
AGATTGATTCTTTGATGAAATGATTAATCCAAAACTTACTAGAATCCAAGGGATCGATCATTTGA
GCAAACAAT
Found at i:115951 original size:22 final size:20
Alignment explanation
Indices: 115926--115968 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 20
115916 TCATGATGAG
115926 ATATGGAAGATAAAGATGGTTT
1 ATATGG-AGATAAAG-TGGTTT
*
115948 ATATGGATATAAAGTGGTTT
1 ATATGGAGATAAAGTGGTTT
115968 A
1 A
115969 AGCATGTGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 7 0.35
21 7 0.35
22 6 0.30
ACGTcount: A:0.40, C:0.00, G:0.26, T:0.35
Consensus pattern (20 bp):
ATATGGAGATAAAGTGGTTT
Found at i:116238 original size:64 final size:65
Alignment explanation
Indices: 116135--116291 Score: 167
Period size: 64 Copynumber: 2.4 Consensus size: 65
116125 TTCAATGTGT
* * * * * *
116135 ATCGAGGCACAAGAAGTGCATCGATGCA-CCCATTAAAAATGGAAACATTGAATGCAATTAGTGC
1 ATCGATGCATAAGTAGTGCATCGATGCACCCCATTAAAAATGAAAACATCGAAGGCAATTAGTGC
* ** *
116199 ATCGATGCATAAAG-AGTGCATCGATGCACCCCCTT-AAAATGAAAACATCGAAGGTGATTTGTG
1 ATCGATGCAT-AAGTAGTGCATCGATGCACCCCATTAAAAATGAAAACATCGAAGGCAATTAGTG
*
116262 T
65 C
**
116263 ATCGATGCATGGGTAGTGCATCGATGCAC
1 ATCGATGCATAAGTAGTGCATCGATGCAC
116292 ATGATAAAGA
Statistics
Matches: 78, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
63 1 0.01
64 69 0.88
65 8 0.10
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.23
Consensus pattern (65 bp):
ATCGATGCATAAGTAGTGCATCGATGCACCCCATTAAAAATGAAAACATCGAAGGCAATTAGTGC
Found at i:116324 original size:20 final size:23
Alignment explanation
Indices: 116279--116332 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 23
116269 GCATGGGTAG
116279 TGCATCGATGCACATGATAAAGAA
1 TGCATCGATGCACATGAT-AAGAA
116303 TGCATCGATGCAC-T-AT-AGAA
1 TGCATCGATGCACATGATAAGAA
116323 TGCATCGATG
1 TGCATCGATG
116333 AACTTCAAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
20 14 0.47
22 2 0.07
23 1 0.03
24 13 0.43
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (23 bp):
TGCATCGATGCACATGATAAGAA
Found at i:116736 original size:9 final size:9
Alignment explanation
Indices: 116706--116744 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
116696 GAATATGAAA
116706 ATGATATAT
1 ATGATATAT
*
116715 AT-ACATAT
1 ATGATATAT
*
116723 GTGATATAT
1 ATGATATAT
116732 ATGATATAT
1 ATGATATAT
116741 ATGA
1 ATGA
116745 GCATATATCA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
8 6 0.24
9 19 0.76
ACGTcount: A:0.44, C:0.03, G:0.13, T:0.41
Consensus pattern (9 bp):
ATGATATAT
Found at i:117734 original size:20 final size:20
Alignment explanation
Indices: 117688--117744 Score: 80
Period size: 20 Copynumber: 2.9 Consensus size: 20
117678 GTAGCCATTT
117688 TCAGTATCGATAC-AAAGGG
1 TCAGTATCGATACTAAAGGG
* * *
117707 TGAGTATCGATACTCAAGTG
1 TCAGTATCGATACTAAAGGG
117727 TCAGTATCGATACTAAAG
1 TCAGTATCGATACTAAAG
117745 AGCTTTATAT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
19 12 0.38
20 20 0.62
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.26
Consensus pattern (20 bp):
TCAGTATCGATACTAAAGGG
Found at i:118323 original size:20 final size:20
Alignment explanation
Indices: 118268--118325 Score: 55
Period size: 20 Copynumber: 2.8 Consensus size: 20
118258 AGGGTGTCAA
118268 AGTGCATCCATGCACCTGCCACT
1 AGTGCATCCATGCACCTG---CT
* *
118291 AGTGTATCGATGCACCATG-T
1 AGTGCATCCATGCACC-TGCT
118311 AGTGCATCCATGCAC
1 AGTGCATCCATGCAC
118326 TCCATTTCGA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
20 14 0.47
23 14 0.47
24 2 0.07
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (20 bp):
AGTGCATCCATGCACCTGCT
Found at i:118379 original size:20 final size:20
Alignment explanation
Indices: 118356--118399 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
118346 TGCATAGATG
* *
118356 CACCTTGCTTTGCATCCATA
1 CACCCTGCTGTGCATCCATA
*
118376 CACCCTGCTGTGCATCCATG
1 CACCCTGCTGTGCATCCATA
118396 CACC
1 CACC
118400 AAGATTGCAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.18, C:0.41, G:0.14, T:0.27
Consensus pattern (20 bp):
CACCCTGCTGTGCATCCATA
Found at i:119682 original size:19 final size:19
Alignment explanation
Indices: 119646--119682 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
119636 TGAAAATGAT
*
119646 TTGATTTTGAAAGCCAAAG
1 TTGATTTTGAAAACCAAAG
*
119665 TTGATTTTGAAAATCAAA
1 TTGATTTTGAAAACCAAA
119683 ATGAAATTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.08, G:0.16, T:0.35
Consensus pattern (19 bp):
TTGATTTTGAAAACCAAAG
Found at i:120498 original size:20 final size:20
Alignment explanation
Indices: 120475--120512 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
120465 AAATGCATTT
*
120475 AATTTTAACAATCGGTATCA
1 AATTTCAACAATCGGTATCA
*
120495 AATTTCAACAATTGGTAT
1 AATTTCAACAATCGGTAT
120513 TGCATAAAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.39, C:0.13, G:0.11, T:0.37
Consensus pattern (20 bp):
AATTTCAACAATCGGTATCA
Found at i:120866 original size:21 final size:21
Alignment explanation
Indices: 120840--120879 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
120830 AAACAATTGG
120840 TAACAATTGATATCATTTTGT
1 TAACAATTGATATCATTTTGT
* *
120861 TAACAATTGGTATCTTTTT
1 TAACAATTGATATCATTTT
120880 CATTAAACAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.10, G:0.10, T:0.50
Consensus pattern (21 bp):
TAACAATTGATATCATTTTGT
Found at i:121152 original size:23 final size:21
Alignment explanation
Indices: 121102--121180 Score: 72
Period size: 21 Copynumber: 3.7 Consensus size: 21
121092 AGGGTGTCAA
121102 AGTGCATCCATGCACCCCTAC
1 AGTGCATCCATGCACCCCTAC
*
121123 AGTGCATCTATGCACCTGCC-AC
1 AGTGCATCCATGCACC--CCTAC
* * **
121145 TAGTGCATCGATGCA-CCATGT
1 -AGTGCATCCATGCACCCCTAC
121166 AGTGCATCCATGCAC
1 AGTGCATCCATGCAC
121181 TCCATTTCGA
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
20 14 0.30
21 15 0.32
22 3 0.06
23 15 0.32
ACGTcount: A:0.24, C:0.34, G:0.19, T:0.23
Consensus pattern (21 bp):
AGTGCATCCATGCACCCCTAC
Found at i:126280 original size:14 final size:14
Alignment explanation
Indices: 126261--126299 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
126251 TAAGAAATCA
*
126261 GGACCCACACAGAG
1 GGACCCACACAAAG
*
126275 GGACCCACATAAAG
1 GGACCCACACAAAG
*
126289 GGCCCCACACA
1 GGACCCACACA
126300 TTATATGTTC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.36, C:0.38, G:0.23, T:0.03
Consensus pattern (14 bp):
GGACCCACACAAAG
Found at i:127361 original size:15 final size:15
Alignment explanation
Indices: 127341--127377 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
127331 TGAGACATTA
*
127341 CCCGCCCCGCATCCG
1 CCCGCCCCACATCCG
*
127356 CCCGCCTCACATCCG
1 CCCGCCCCACATCCG
127371 CCCGCCC
1 CCCGCCC
127378 AACTAAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.08, C:0.68, G:0.16, T:0.08
Consensus pattern (15 bp):
CCCGCCCCACATCCG
Found at i:132324 original size:29 final size:29
Alignment explanation
Indices: 132282--132364 Score: 132
Period size: 29 Copynumber: 2.9 Consensus size: 29
132272 TTCCATTTGT
*
132282 TCATGTA-CTCATGTCATTTCTCTTATGA
1 TCATGTAGCTCATGTCATTTCTCATATGA
*
132310 TCATGTAGCTCATGTCATTTCTCATGTGA
1 TCATGTAGCTCATGTCATTTCTCATATGA
132339 TCATGTAGCTCATGTCATGTTCTCAT
1 TCATGTAGCTCATGTCAT-TTCTCAT
132365 GTCACATATC
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
28 7 0.14
29 37 0.73
30 7 0.14
ACGTcount: A:0.20, C:0.22, G:0.14, T:0.43
Consensus pattern (29 bp):
TCATGTAGCTCATGTCATTTCTCATATGA
Found at i:132381 original size:12 final size:12
Alignment explanation
Indices: 132361--132396 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
132351 TGTCATGTTC
*
132361 TCATGTCACATA
1 TCATATCACATA
132373 TCATATCACATA
1 TCATATCACATA
132385 TCATATCACATA
1 TCATATCACATA
132397 GGTATTTGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.39, C:0.25, G:0.03, T:0.33
Consensus pattern (12 bp):
TCATATCACATA
Found at i:132822 original size:64 final size:64
Alignment explanation
Indices: 132753--132907 Score: 158
Period size: 64 Copynumber: 2.4 Consensus size: 64
132743 TAATGAAGGT
*
132753 ATGCATCGATGCACTACTTGTGCATCGG-TGCA-TAAAATGCATTCGAT-GTTTTATTATTAATG
1 ATGCATCGATGCACTACTTGTGCATCGGATGCACT-AAATGCATTCGATCGTTTTATT-TTAA-A
*
132815 GG
63 AG
* * * *
132817 ATGCATCGATGCA-TGCCTTATGCAT-GGATGCACTAATTGCATTCGATCTTTTTATTTTAAAAG
1 ATGCATCGATGCACT-ACTTGTGCATCGGATGCACTAAATGCATTCGATCGTTTTATTTTAAAAG
* *
132880 AGTGCATTGATGCACTACCTGTGCATCG
1 A-TGCATCGATGCACTACTTGTGCATCG
132908 ATACACCTTC
Statistics
Matches: 74, Mismatches: 10, Indels: 13
0.76 0.10 0.13
Matches are distributed among these distances:
63 5 0.07
64 59 0.80
65 10 0.14
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.35
Consensus pattern (64 bp):
ATGCATCGATGCACTACTTGTGCATCGGATGCACTAAATGCATTCGATCGTTTTATTTTAAAAG
Found at i:132969 original size:21 final size:21
Alignment explanation
Indices: 132943--133020 Score: 156
Period size: 21 Copynumber: 3.7 Consensus size: 21
132933 TTTAACCTTG
132943 ATGCATCGATGCACTATGAAT
1 ATGCATCGATGCACTATGAAT
132964 ATGCATCGATGCACTATGAAT
1 ATGCATCGATGCACTATGAAT
132985 ATGCATCGATGCACTATGAAT
1 ATGCATCGATGCACTATGAAT
133006 ATGCATCGATGCACT
1 ATGCATCGATGCACT
133021 CTGCCCAGAA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 57 1.00
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (21 bp):
ATGCATCGATGCACTATGAAT
Found at i:137151 original size:23 final size:23
Alignment explanation
Indices: 137125--137168 Score: 72
Period size: 23 Copynumber: 1.9 Consensus size: 23
137115 TTCAACAATG
137125 CATGTCA-CACTCTTATTAGAACA
1 CATGTCATCA-TCTTATTAGAACA
137148 CATGTCATCATCTTATTAGAA
1 CATGTCATCATCTTATTAGAA
137169 GATTATTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 18 0.90
24 2 0.10
ACGTcount: A:0.34, C:0.23, G:0.09, T:0.34
Consensus pattern (23 bp):
CATGTCATCATCTTATTAGAACA
Found at i:137606 original size:15 final size:16
Alignment explanation
Indices: 137578--137607 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
137568 AATAATAAAA
137578 TAATAAACATTATTTT
1 TAATAAACATTATTTT
137594 TAATAAA-ATTATTT
1 TAATAAACATTATTT
137608 AATTTTTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (16 bp):
TAATAAACATTATTTT
Found at i:137626 original size:20 final size:20
Alignment explanation
Indices: 137603--137647 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
137593 TTAATAAAAT
137603 TATT-TAATTTTTTATTTTAA
1 TATTATAATTTTTTATTTT-A
**
137623 TATTATGTTTTTTTATTTTA
1 TATTATAATTTTTTATTTTA
137643 TATTA
1 TATTA
137648 AAAAGTTAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 10 0.45
21 12 0.55
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (20 bp):
TATTATAATTTTTTATTTTA
Found at i:141538 original size:11 final size:11
Alignment explanation
Indices: 141522--141546 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
141512 AAAAAAACAT
141522 GGGCTGCTAAG
1 GGGCTGCTAAG
141533 GGGCTGCTAAG
1 GGGCTGCTAAG
141544 GGG
1 GGG
141547 TATTTTTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.16, G:0.52, T:0.16
Consensus pattern (11 bp):
GGGCTGCTAAG
Found at i:141935 original size:16 final size:16
Alignment explanation
Indices: 141902--141935 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
141892 TTACTATTCA
* *
141902 CGTGAATAGTGAATTT
1 CGTGAATAGTAAAATT
141918 CGTGAATAGTAAAATT
1 CGTGAATAGTAAAATT
141934 CG
1 CG
141936 GTCGGCGATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.35, C:0.09, G:0.24, T:0.32
Consensus pattern (16 bp):
CGTGAATAGTAAAATT
Found at i:142707 original size:15 final size:16
Alignment explanation
Indices: 142687--142718 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
142677 TGGCAGATCC
142687 AAATCCAG-ACGGGAA
1 AAATCCAGAACGGGAA
142702 AAATCCAGAACGGGAA
1 AAATCCAGAACGGGAA
142718 A
1 A
142719 GAAAGATACC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.50, C:0.19, G:0.25, T:0.06
Consensus pattern (16 bp):
AAATCCAGAACGGGAA
Found at i:145956 original size:11 final size:11
Alignment explanation
Indices: 145940--145964 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
145930 AAAAAAACAT
145940 GGGCTGCTAAG
1 GGGCTGCTAAG
145951 GGGCTGCTAAG
1 GGGCTGCTAAG
145962 GGG
1 GGG
145965 TATTTTTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.16, G:0.52, T:0.16
Consensus pattern (11 bp):
GGGCTGCTAAG
Found at i:153759 original size:31 final size:31
Alignment explanation
Indices: 153719--153801 Score: 123
Period size: 31 Copynumber: 2.7 Consensus size: 31
153709 AGTCGATAGA
*
153719 TCCCAAAGAACTTAGGTAAACAGTCCATATG
1 TCCCGAAGAACTTAGGTAAACAGTCCATATG
*
153750 TCCCGAAGAA-TATAGGTAAACAGTTCATATG
1 TCCCGAAGAACT-TAGGTAAACAGTCCATATG
*
153781 TCCCGAAGAACATAGGTAAAC
1 TCCCGAAGAACTTAGGTAAAC
153802 CCTCGACCCT
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
30 1 0.02
31 46 0.98
ACGTcount: A:0.40, C:0.20, G:0.18, T:0.22
Consensus pattern (31 bp):
TCCCGAAGAACTTAGGTAAACAGTCCATATG
Found at i:154591 original size:64 final size:64
Alignment explanation
Indices: 154453--154614 Score: 202
Period size: 64 Copynumber: 2.5 Consensus size: 64
154443 TCTTTCAATG
* *
154453 AAAGTATGCATCGATGCACTACTGATGCATCGGTGCATAAAATGCATTCGATGTTGTATTATTA
1 AAAGTATGCATCGATGCACTACTAATGCATCGATGCATAAAATGCATTCGATGTTGTATTATTA
*** * * * *
154517 CTGGTATGCATCGATGCACTACTTATGCATCGATGCATGAATTGCATTCGATGTTTTTATT-TTA
1 AAAGTATGCATCGATGCACTACTAATGCATCGATGCATAAAATGCATTCGATG-TTGTATTATTA
*
154581 AAAG-AGTGCATCGATGCACTACCAATGCATCGAT
1 AAAGTA-TGCATCGATGCACTACTAATGCATCGAT
154615 ACACCTTCAA
Statistics
Matches: 83, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
63 1 0.01
64 76 0.92
65 6 0.07
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (64 bp):
AAAGTATGCATCGATGCACTACTAATGCATCGATGCATAAAATGCATTCGATGTTGTATTATTA
Found at i:155010 original size:19 final size:20
Alignment explanation
Indices: 154986--155023 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
154976 GAAACTCATT
*
154986 TTCTTTAATCTTT-CATAAC
1 TTCTTTAAGCTTTCCATAAC
155005 TTCTTTAAGCTTTCCATAA
1 TTCTTTAAGCTTTCCATAA
155024 GCTTAAGTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.26, C:0.21, G:0.03, T:0.50
Consensus pattern (20 bp):
TTCTTTAAGCTTTCCATAAC
Found at i:155137 original size:3 final size:3
Alignment explanation
Indices: 155129--155160 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
155119 TCTCGTACAT
155129 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
155161 TGATGATGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:158292 original size:31 final size:31
Alignment explanation
Indices: 158255--158386 Score: 142
Period size: 31 Copynumber: 4.2 Consensus size: 31
158245 GATCCTCGGT
* *
158255 AACTGTCCATAGGTTCCGAAGAACCTAGGTA
1 AACTGTCCATATGTTCCGAAGAACATAGGTA
**
158286 AACTGTCCATATGTTCCTTAGAACATAGGTA
1 AACTGTCCATATGTTCCGAAGAACATAGGTA
* *
158317 TACTATCCATATG-TCTCGAA-AGACATAGGTA
1 AACTGTCCATATGTTC-CGAAGA-ACATAGGTA
* *
158348 ATTCTGTCCATATGTTCCGTAGAACATAGGTA
1 A-ACTGTCCATATGTTCCGAAGAACATAGGTA
*
158380 TACTGTC
1 AACTGTC
158387 AACTCTTGGC
Statistics
Matches: 82, Mismatches: 14, Indels: 10
0.77 0.13 0.09
Matches are distributed among these distances:
30 3 0.04
31 54 0.66
32 22 0.27
33 3 0.04
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.30
Consensus pattern (31 bp):
AACTGTCCATATGTTCCGAAGAACATAGGTA
Found at i:161338 original size:31 final size:32
Alignment explanation
Indices: 161295--161385 Score: 134
Period size: 31 Copynumber: 2.9 Consensus size: 32
161285 GAAGGACCAG
*
161295 TCCATA-GATCCCGAAGAACCTAGGTAAACA-T
1 TCCATATG-TCCCGAAGAACATAGGTAAACAGT
161326 TCCATATGTCCCGAAGAACATAGGTAAACAGT
1 TCCATATGTCCCGAAGAACATAGGTAAACAGT
*
161358 T-CATATGTCACGAAGAACATAGGTAAAC
1 TCCATATGTCCCGAAGAACATAGGTAAAC
161386 CCTCGACCCT
Statistics
Matches: 56, Mismatches: 2, Indels: 4
0.90 0.03 0.06
Matches are distributed among these distances:
31 53 0.95
32 3 0.05
ACGTcount: A:0.40, C:0.22, G:0.18, T:0.21
Consensus pattern (32 bp):
TCCATATGTCCCGAAGAACATAGGTAAACAGT
Found at i:162175 original size:64 final size:64
Alignment explanation
Indices: 162037--162198 Score: 193
Period size: 64 Copynumber: 2.5 Consensus size: 64
162027 TCTTTCAATG
* * *
162037 AAAGTATACATCGATGCACTACTGATGCATCGGTGCATAAAATGCATTCGATGTTGTATTATTA
1 AAAGTATGCATCGATGCACTACTAATGCATCGATGCATAAAATGCATTCGATGTTGTATTATTA
*** * * * *
162101 CTGGTATGCATCGATGCACTACTTATGCATCGATGCATGAATTGCATTCGATGTTTTTATT-TTA
1 AAAGTATGCATCGATGCACTACTAATGCATCGATGCATAAAATGCATTCGATG-TTGTATTATTA
*
162165 AAAG-AGTGCATCGATGCACTACCAATGCATCGAT
1 AAAGTA-TGCATCGATGCACTACTAATGCATCGAT
162199 ACACCTTCAA
Statistics
Matches: 82, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
63 1 0.01
64 75 0.91
65 6 0.07
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (64 bp):
AAAGTATGCATCGATGCACTACTAATGCATCGATGCATAAAATGCATTCGATGTTGTATTATTA
Found at i:165196 original size:13 final size:13
Alignment explanation
Indices: 165178--165203 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
165168 AACTTTCAAA
165178 ACTTACATTTTGG
1 ACTTACATTTTGG
165191 ACTTACATTTTGG
1 ACTTACATTTTGG
165204 TCACCAGCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.15, G:0.15, T:0.46
Consensus pattern (13 bp):
ACTTACATTTTGG
Done.