genome.fa.s2523.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002523.1 Hibiscus syriacus cultivar Beakdansim tig00005134_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80695

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4577--4617	8	5.2	8	82	5	57	34	0	29	36	1.58
4694--5818	128	8.8	128	96	1	1962	22	24	21	31	1.98
6218--6317	33	3.0	34	83	2	139	39	1	4	56	1.25
6837--6906	21	3.3	20	90	5	95	18	27	35	18	1.94
8679--8767	34	2.7	31	81	6	97	59	2	0	38	1.10
8688--8756	31	2.2	32	79	10	79	59	1	0	39	1.06
9700--10189	228	2.1	228	96	0	901	44	7	8	39	1.63
10224--10284	20	3.1	19	82	13	70	55	14	14	14	1.69
10229--10423	106	1.8	106	93	0	336	44	13	16	25	1.84
12598--12641	21	2.1	21	91	0	70	40	11	31	15	1.83
12675--12740	33	2.0	33	90	0	105	28	0	48	22	1.51
14534--14582	19	2.6	19	90	6	73	32	2	10	55	1.45
14701--17272	200	12.9	200	98	0	4954	36	14	17	31	1.90
14701--17272	799	3.2	800	98	0	4954	36	14	17	31	1.90
18738--18792	12	4.6	12	75	8	58	34	14	34	16	1.89
18738--18796	24	2.5	24	77	5	66	35	13	33	16	1.88
18786--18830	3	15.0	3	85	0	63	37	2	33	26	1.69
18746--18830	12	7.1	12	79	0	71	35	9	32	22	1.86
20317--20811	184	2.7	182	92	2	837	34	14	16	33	1.90
23445--23509	23	2.8	23	88	0	94	33	4	21	40	1.74
23866--23938	23	3.2	23	90	0	110	34	2	21	41	1.68
24184--24227	21	2.0	22	82	4	54	68	6	4	20	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38029--38077	22	2.2	22	85	3	62	57	12	0	30	1.36
38017--38675	54	11.8	54	69	14	376	52	12	0	34	1.40
38049--38690	32	22.4	32	69	25	317	52	12	0	34	1.41
38151--38204	14	3.6	14	72	18	54	57	5	0	37	1.22
38247--38289	22	2.0	22	95	0	77	48	13	2	34	1.56
38372--38407	15	2.5	15	95	4	65	58	0	0	41	0.98
38332--38460	22	5.5	22	67	12	78	52	10	0	36	1.37
38508--38550	22	2.0	22	100	0	86	51	13	0	34	1.42
38510--38558	22	2.2	22	88	3	71	55	14	0	30	1.40
38564--38638	22	3.2	23	75	17	82	54	17	0	28	1.43
38072--38705	315	2.0	311	88	6	935	52	11	0	35	1.40
38661--38705	15	3.0	15	96	0	81	51	0	0	48	1.00
38702--38746	23	2.0	23	81	0	54	48	2	0	48	1.13
38836--38903	33	2.1	33	97	0	127	33	22	16	27	1.95
43696--43735	11	3.4	11	81	18	53	25	7	7	60	1.50
43692--43733	14	3.2	14	80	19	63	26	7	7	59	1.50
48453--48583	67	2.0	67	96	0	244	45	10	15	28	1.79
52437--52528	41	2.3	40	78	10	98	55	2	1	41	1.19
52430--52825	184	2.1	188	91	2	640	43	3	7	45	1.49
52906--52945	21	1.9	21	94	0	71	25	27	25	22	2.00
63689--63729	17	2.4	17	91	0	64	46	0	9	43	1.36
64541--64588	24	2.0	24	84	8	62	50	4	8	37	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66603--66661	31	1.9	30	89	3	91	50	18	0	30	1.47
66611--66705	34	2.9	34	87	4	124	52	15	1	30	1.50
71395--71484	29	3.1	29	81	9	96	57	4	3	34	1.35
72084--72142	31	1.9	31	86	6	84	35	3	6	54	1.44
73216--73253	15	2.4	16	86	8	60	13	15	31	39	1.86
74710--74762	23	2.3	23	74	6	54	39	13	5	41	1.68
74886--74930	21	2.1	21	83	0	54	46	4	15	33	1.66
76404--76432	2	14.5	2	100	0	58	48	0	0	51	1.00
78533--78562	2	15.5	2	93	6	53	53	0	0	46	1.00

Tables:   1

The End!