Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002524.1 Hibiscus syriacus cultivar Beakdansim tig00005135_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96964

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3237--3277
21
2.0
21
100
0
82
24
19
12
43
1.85
9765--9821
6
9.7
6
98
1
107
31
50
17
0
1.46
10119--10202
19
4.2
19
77
15
80
32
29
4
33
1.78
12493--12545
25
2.1
25
82
6
63
50
7
5
35
1.54
17362--17406
2
22.5
2
100
0
90
51
0
0
48
1.00
17476--17538
23
2.6
24
73
14
67
26
6
3
63
1.34
19032--19078
16
2.8
17
80
6
60
59
0
0
40
0.97
19032--19066
17
2.1
17
89
5
54
62
0
0
37
0.95
21232--21268
19
1.9
19
94
0
65
29
18
18
32
1.96
21342--21478
36
3.8
36
90
0
202
19
25
19
35
1.96
22513--22549
19
1.9
19
94
0
65
29
18
18
32
1.96
23841--24065
109
2.1
109
95
0
407
38
17
12
31
1.87
35645--35713
34
2.1
31
89
7
102
21
31
15
30
1.95
35996--36035
21
1.9
21
94
0
71
25
32
22
20
1.98
36218--36308
31
3.0
31
96
3
168
42
17
6
32
1.75
38695--38729
2
17.5
2
100
0
70
51
0
0
48
1.00
45213--45268
25
2.3
25
90
3
96
14
19
35
30
1.91
45663--45696
17
2.0
17
94
0
59
17
20
23
38
1.93
46103--46402
151
2.0
151
96
1
557
31
25
17
26
1.97
50096--50185
45
2.0
45
100
0
180
37
17
22
22
1.94
55342--55372
15
2.1
15
93
0
53
19
12
25
41
1.87
57236--57346
32
3.7
31
76
15
115
24
16
17
42
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57809--57924
58
2.0
58
100
0
232
27
17
27
27
1.97
58648--58691
16
2.6
17
75
7
54
43
0
0
56
0.99
63105--63132
2
14.0
2
100
0
56
50
0
0
50
1.00
64906--65013
52
2.1
51
82
14
127
19
5
1
73
1.13
64934--64985
23
2.1
26
82
10
65
21
7
0
71
1.11
65031--65071
17
2.5
17
84
15
59
24
4
0
70
1.06
66230--66269
15
2.7
15
100
0
80
5
12
7
75
1.18
70444--71287
249
3.4
249
91
0
1309
30
24
20
25
1.98
70460--71451
165
6.0
162
79
6
750
30
24
19
25
1.98
70461--71469
84
12.2
82
76
6
876
30
24
19
25
1.98
73226--73274
16
3.1
17
80
13
61
24
6
0
69
1.11
73312--73353
2
21.0
2
85
0
57
45
2
2
50
1.27
73458--73486
6
4.8
6
100
0
58
48
0
0
51
1.00
76386--76612
116
2.0
116
80
8
257
47
6
15
29
1.71
76368--76612
58
4.2
56
77
11
221
47
6
16
28
1.72
90842--90879
20
1.9
20
94
0
67
34
18
21
26
1.96
92427--92488
23
2.7
23
82
0
79
17
25
25
30
1.97
93840--93866
3
9.0
3
100
0
54
66
0
0
33
0.92

Tables:   1

The End!