genome.fa.s2525.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002525.1 Hibiscus syriacus cultivar Beakdansim tig00005138_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88918

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6310--6336	13	2.1	13	100	0	54	44	0	0	55	0.99
14848--14924	14	6.0	12	69	22	50	44	0	0	55	0.99
14894--14946	21	2.6	21	85	5	65	39	1	0	58	1.09
14884--14950	16	4.4	15	75	14	57	40	1	0	58	1.07
18308--18439	60	2.1	62	81	10	146	51	4	10	33	1.57
18623--18658	14	2.6	14	100	0	72	16	25	5	52	1.65
19120--19217	45	2.2	45	83	3	117	24	13	36	25	1.92
19628--19927	39	7.7	39	86	1	413	21	24	12	43	1.86
19628--19927	78	3.8	78	92	0	492	21	24	12	43	1.86
19932--20192	73	3.6	73	92	2	425	39	11	16	32	1.85
20881--20935	22	2.5	22	90	0	92	41	12	10	34	1.78
21304--21452	54	2.8	54	90	0	226	28	21	14	35	1.92
23641--23679	13	2.9	13	82	17	53	0	23	0	76	0.78
23635--23721	6	14.7	6	68	23	51	3	17	1	78	0.96
26662--26692	16	1.9	16	93	0	53	29	3	16	51	1.59
28524--28659	63	2.1	63	81	6	150	50	4	12	32	1.60
30433--30477	18	2.5	18	96	0	81	15	71	6	6	1.29
37834--37871	20	1.9	20	88	0	58	15	7	13	63	1.51
38665--38768	50	2.1	50	81	0	118	24	27	22	25	1.99
39579--39635	20	2.8	19	82	15	62	57	3	1	36	1.26
39732--39780	13	3.6	14	74	20	50	67	2	0	30	1.02
40029--40085	29	1.9	30	82	7	71	35	7	14	43	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40434--40500	31	2.2	31	88	0	98	40	17	10	31	1.84
45878--45909	11	2.9	11	100	0	64	43	28	9	18	1.81
48726--48791	28	2.4	28	100	0	132	24	24	22	28	1.99
58132--58768	348	1.8	348	88	3	981	35	14	11	38	1.82
60554--60646	21	4.5	21	78	4	100	39	18	24	17	1.91
60554--60646	41	2.3	41	100	0	186	39	18	24	17	1.91
60573--60707	41	3.3	41	82	6	132	38	20	21	19	1.94
60635--60729	20	4.7	20	80	2	91	34	24	17	23	1.96
60917--60960	22	2.0	22	95	0	79	20	45	15	18	1.85
62578--62622	18	2.5	18	88	0	72	26	44	15	13	1.83
63104--63169	20	3.4	20	81	4	73	37	24	22	15	1.92
63159--63215	14	3.8	14	80	17	69	49	22	17	10	1.77
63143--63232	32	2.8	32	94	1	153	47	21	18	12	1.81
63249--63306	14	3.9	14	77	16	62	10	15	25	48	1.77
63244--63322	32	2.4	33	93	2	133	11	17	24	46	1.81
63307--63361	20	2.8	19	89	5	83	16	25	23	34	1.95
65366--65433	19	3.8	19	81	14	92	48	17	20	13	1.80
65452--65509	20	2.9	20	94	0	98	17	22	22	37	1.93
66569--66622	24	2.2	24	90	0	81	24	16	20	38	1.92
66797--66821	12	2.1	12	100	0	50	72	0	28	0	0.86
69107--69171	19	3.7	19	74	19	77	44	20	23	12	1.84
69087--69169	33	2.3	36	78	18	100	40	21	22	14	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69167--69210	20	2.2	20	88	4	63	15	15	22	45	1.85
69172--69211	20	2.0	20	95	0	71	12	15	20	52	1.74
69350--69386	14	2.6	14	91	0	65	45	24	0	29	1.53
70745--70811	21	3.2	21	68	4	55	19	20	35	23	1.95
72893--72991	33	3.0	33	89	1	144	39	26	23	11	1.88
72868--73052	19	10.1	19	75	14	156	43	21	22	12	1.86
72963--73052	39	2.3	38	92	1	144	46	21	20	12	1.82
73048--73148	20	5.5	19	79	12	77	12	16	23	46	1.82
73095--73145	20	2.5	20	93	0	84	15	19	23	41	1.90
73668--73720	20	2.7	20	84	0	70	24	22	26	26	2.00
73731--73843	41	2.8	41	90	2	138	19	22	20	38	1.94
73751--73843	20	4.6	20	78	4	96	17	23	19	39	1.92
78914--78939	13	2.0	13	100	0	52	46	15	15	23	1.83
81858--81913	21	2.7	21	100	0	112	28	23	21	26	1.99
81948--82106	64	2.5	64	84	4	187	33	19	18	28	1.95
82761--82851	31	2.9	31	90	6	132	20	17	21	39	1.92
84587--84653	18	3.7	19	78	11	70	29	20	20	28	1.98
85725--85859	31	4.4	31	79	10	150	30	19	20	30	1.97
85810--85868	31	1.9	31	86	3	75	27	20	23	28	1.99

Tables:   1

The End!