genome.fa.s2526.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002526.1 Hibiscus syriacus cultivar Beakdansim tig00005139_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  153185

Tables:   1   

This is table  1  of  1  ( 86 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5749--5870	63	2.0	62	82	7	151	45	4	5	43	1.49
7486--7607	63	1.9	63	81	6	149	43	4	5	45	1.49
10190--10220	12	2.6	12	89	0	53	51	0	0	48	1.00
10203--10502	22	13.7	20	79	6	170	43	0	9	46	1.39
10204--10502	44	6.8	44	90	1	402	43	0	9	46	1.39
10201--10502	66	4.6	66	85	1	426	44	0	9	46	1.39
10525--10584	31	1.9	31	93	0	102	45	8	5	41	1.56
14254--14295	22	1.9	22	90	0	66	33	26	14	26	1.94
24198--24224	2	13.5	2	100	0	54	48	0	0	51	1.00
41926--41958	2	16.5	2	100	0	66	51	0	48	0	1.00
43394--43429	18	2.0	18	94	0	63	47	16	13	22	1.82
44228--44372	72	2.0	72	95	0	263	31	9	23	35	1.87
45096--45152	22	2.5	22	86	8	71	21	17	22	38	1.93
46076--46144	34	2.0	34	100	0	138	43	20	5	30	1.75
47146--47226	36	2.2	36	95	0	144	19	19	23	37	1.95
47146--47258	36	3.3	33	82	10	97	22	20	23	34	1.97
54268--54319	21	2.5	21	81	3	61	38	19	25	17	1.93
54308--54421	20	5.7	20	83	6	113	31	25	18	24	1.97
54305--54421	61	1.9	61	85	0	162	33	24	17	23	1.97
54941--54997	20	2.8	20	78	7	71	50	22	15	10	1.74
54941--55008	20	3.5	19	76	6	64	50	25	14	10	1.74
55004--55188	19	10.1	19	77	14	165	12	22	21	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55004--55188	33	5.1	38	77	13	147	12	22	21	43	1.86
55131--55188	20	2.9	20	80	10	64	13	24	18	43	1.87
58834--58858	12	2.1	12	100	0	50	0	28	0	72	0.86
59033--59086	24	2.2	24	90	0	81	40	20	14	24	1.90
60144--60193	20	2.5	20	86	0	64	36	22	20	22	1.96
60156--60201	20	2.3	20	92	0	74	41	15	23	19	1.89
60225--60277	14	3.5	14	76	18	61	11	20	20	47	1.81
60220--60270	16	3.2	16	74	20	61	11	23	19	45	1.83
62266--62332	19	3.5	19	83	4	89	37	23	23	14	1.93
62321--62378	14	3.9	14	79	16	71	48	25	17	8	1.75
62305--62383	32	2.4	33	95	2	142	46	24	18	10	1.80
62412--62469	14	3.9	14	79	16	71	10	17	24	48	1.78
62395--62485	32	2.8	33	94	3	166	12	18	21	47	1.81
62472--62524	20	2.7	20	90	0	79	15	20	24	39	1.91
63985--64026	17	2.7	15	82	13	57	57	28	0	14	1.38
63989--64022	17	2.0	17	94	0	59	55	32	0	11	1.36
72550--72594	18	2.5	18	88	0	72	13	15	44	26	1.83
73908--73945	20	1.9	20	88	0	58	50	21	15	13	1.78
74438--74531	20	4.7	20	80	2	89	23	18	24	34	1.96
74418--74532	20	5.7	20	78	5	88	23	17	23	35	1.95
74521--74613	20	4.5	21	78	4	100	17	24	18	39	1.91
74460--74594	41	3.3	41	82	4	139	19	21	20	38	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74521--74613	41	2.3	41	100	0	186	17	24	18	39	1.91
77213--77258	2	23.0	2	100	0	92	0	50	0	50	1.00
78783--78819	19	1.9	19	100	0	74	10	29	5	54	1.57
80046--80580	133	4.0	134	88	2	763	46	14	16	22	1.83
80046--80580	269	2.0	266	88	1	800	46	14	16	22	1.83
83705--83742	19	2.0	19	89	0	58	18	21	28	31	1.97
84143--84255	46	2.5	46	90	4	169	40	5	19	34	1.74
84404--84499	38	2.5	38	86	0	138	26	22	26	25	2.00
84433--84497	17	3.6	17	73	15	58	21	23	27	27	1.99
96365--96395	2	15.5	2	100	0	62	0	48	0	51	1.00
97473--97506	16	2.1	16	88	0	50	50	0	2	47	1.16
97548--97581	16	2.0	18	88	11	54	26	2	5	64	1.30
98051--98298	130	1.9	130	92	0	415	36	12	14	35	1.85
98686--98761	35	2.2	35	92	0	125	35	1	23	39	1.63
99303--99343	14	3.2	12	83	16	55	56	2	0	41	1.13
110474--110543	23	3.0	23	76	12	79	31	24	24	20	1.98
110930--110980	20	2.4	21	81	15	61	33	15	0	50	1.44
111400--111500	45	2.2	45	85	3	132	26	19	18	34	1.95
115362--115412	20	2.4	21	81	15	61	33	15	0	50	1.44
121247--121539	30	10.1	29	79	11	228	54	0	7	37	1.33
121249--121511	86	3.0	87	76	11	216	54	0	6	37	1.32
121688--121721	15	2.4	14	90	5	50	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125734--125823	44	2.0	44	100	0	180	32	13	13	41	1.83
126763--126839	31	2.5	31	89	0	109	35	14	24	25	1.93
141654--141691	13	3.2	12	85	10	51	44	2	5	47	1.39
141870--141912	16	2.8	15	86	6	59	51	0	0	48	1.00
142005--142030	2	13.0	2	100	0	52	50	0	0	50	1.00
142221--142276	21	2.7	21	88	0	85	23	10	14	51	1.73
142551--142587	16	2.4	16	86	8	51	29	5	0	64	1.15
145633--145675	20	2.2	20	95	0	77	20	18	23	37	1.94
145798--145830	14	2.4	14	94	0	57	51	18	0	30	1.46
147178--147292	21	5.5	21	74	6	90	22	19	35	22	1.96
147178--147296	42	2.8	42	84	5	152	23	18	35	22	1.96
147436--147477	12	3.5	12	83	6	50	69	7	0	23	1.13
147574--147627	21	2.6	21	75	0	63	38	33	12	14	1.85
149758--149812	22	2.5	22	94	2	94	23	12	41	21	1.88
149983--150032	20	2.5	20	90	0	82	24	18	24	34	1.96
150297--150334	19	2.0	20	89	5	60	63	0	2	34	1.09
150302--150356	27	2.1	26	83	10	67	67	0	1	30	1.01
150320--150370	14	3.2	16	83	8	52	64	0	0	35	0.94
152897--152934	16	2.6	14	81	18	51	34	18	0	47	1.49
152901--152937	16	2.3	16	100	0	74	32	16	0	51	1.45

Tables:   1

The End!