Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002527.1 Hibiscus syriacus cultivar Beakdansim tig00005140_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64545

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
788--845
20
2.7
20
81
10
62
32
18
20
27
1.97
1142--1186
19
2.3
21
81
14
60
22
4
22
51
1.66
1303--1334
12
2.6
13
80
19
50
43
0
21
34
1.53
1729--1837
31
3.5
31
77
14
116
31
17
16
34
1.92
7024--7058
2
17.5
2
100
0
70
51
0
0
48
1.00
7762--7883
22
5.5
22
93
0
199
15
25
30
28
1.96
7872--7906
18
2.0
17
88
5
52
28
20
22
28
1.98
9624--9732
31
3.5
31
72
12
96
30
14
18
36
1.91
9630--9750
62
1.9
63
85
5
165
30
15
19
33
1.93
13076--13127
24
2.1
26
86
10
74
71
0
1
26
0.97
13096--13151
19
2.8
21
72
10
62
64
0
3
32
1.11
13835--13919
37
2.3
37
87
0
116
32
9
15
42
1.79
14681--15955
106
12.0
106
92
0
1985
22
17
24
34
1.96
16915--16970
22
2.5
22
91
0
94
26
10
25
37
1.88
17573--17625
26
2.1
25
85
3
70
1
13
5
79
0.99
22324--22402
24
3.2
26
72
18
78
65
0
3
30
1.10
22322--22370
13
3.7
14
84
10
59
69
0
2
28
1.00
22524--22549
13
2.0
13
100
0
52
69
0
7
23
1.14
22570--22618
21
2.2
21
82
10
53
61
0
4
34
1.15
24888--24916
15
2.0
15
93
6
51
75
6
6
10
1.17
28399--28687
145
2.0
147
80
8
331
52
4
11
31
1.59
28447--28754
149
2.1
145
77
9
304
53
4
11
30
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29249--29274
2
13.0
2
100
0
52
50
0
0
50
1.00
41597--41642
17
2.7
17
86
0
56
34
28
17
19
1.94
45425--45473
23
2.1
23
88
7
73
28
2
12
57
1.46
55640--55688
23
2.1
23
88
7
73
28
2
12
57
1.46
57219--57409
75
2.5
74
90
3
310
25
27
26
20
1.99
57618--57650
10
3.2
11
91
8
52
66
9
15
9
1.43
61697--61730
16
2.1
16
88
0
50
50
5
20
23
1.70

Tables:   1

The End!