Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002528.1 Hibiscus syriacus cultivar Beakdansim tig00005141_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86444

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4410--4441
2
16.5
2
93
6
57
53
0
0
46
1.00
4688--4722
2
17.5
2
100
0
70
48
0
51
0
1.00
10246--10291
23
2.0
24
83
12
60
39
2
10
47
1.51
10253--10305
27
2.0
27
82
14
65
41
3
7
47
1.50
11473--11514
18
2.4
17
80
15
50
35
9
0
54
1.33
11726--11759
15
2.2
16
89
5
52
17
8
0
73
1.08
22263--22328
8
8.7
7
84
12
78
81
4
13
0
0.83
22263--22328
23
2.9
21
82
14
78
81
4
13
0
0.83
22265--22325
31
2.0
31
84
12
81
80
4
14
0
0.87
23439--23696
110
2.4
107
83
6
299
34
23
17
25
1.96
25603--25648
8
5.9
8
82
14
60
26
0
2
71
0.97
25660--25719
18
3.4
17
80
15
52
40
6
0
53
1.27
25693--25720
2
14.0
2
100
0
56
50
0
0
50
1.00
25922--25956
16
2.1
17
89
5
54
17
8
0
74
1.06
26965--26999
18
1.9
18
100
0
70
51
5
2
40
1.40
30308--30349
20
2.0
21
86
4
59
23
21
28
26
1.99
30684--30756
36
2.0
35
86
5
101
49
4
0
46
1.21
31254--31303
26
1.9
26
88
8
75
44
0
4
52
1.20
42775--42993
64
3.4
64
79
3
201
33
19
18
28
1.95
49667--49890
64
3.5
64
82
3
229
33
19
17
29
1.95
50187--50235
24
2.0
24
84
7
64
34
4
20
40
1.71
50200--50235
12
3.0
12
91
0
63
33
5
25
36
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53847--53927
9
9.7
9
73
18
52
60
2
0
37
1.10
53854--53918
16
4.1
16
83
11
73
56
3
0
40
1.15
53867--53918
7
6.7
7
81
16
59
57
1
0
40
1.10
53867--53918
17
3.4
14
85
15
59
57
1
0
40
1.10
53880--53928
24
2.0
24
88
7
73
59
2
0
38
1.09
56102--56143
22
1.9
22
85
9
59
42
23
11
21
1.86
56684--56716
12
2.8
12
95
0
57
42
27
0
30
1.56
65283--65314
2
16.0
2
100
0
64
50
0
0
50
1.00
65893--65970
31
2.5
31
91
0
120
26
24
11
37
1.90
67582--67642
31
2.0
31
93
0
104
24
18
14
42
1.88
76256--76296
18
2.3
18
91
4
66
29
4
2
63
1.28
80207--80258
27
2.0
26
84
3
68
48
0
17
34
1.48
81199--81233
15
2.3
15
95
0
61
14
20
34
31
1.92
81452--81492
18
2.2
20
86
8
59
46
7
7
39
1.60
85775--85799
13
1.9
13
100
0
50
16
36
8
40
1.77

Tables:   1

The End!