genome.fa.s2529.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002529.1 Hibiscus syriacus cultivar Beakdansim tig00005142_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67149

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
210--241	17	1.9	17	93	6	57	34	15	0	50	1.45
473--526	28	1.9	28	85	7	74	14	0	37	48	1.45
1539--1672	60	2.2	60	78	5	153	32	22	6	38	1.80
1734--1878	60	2.4	59	79	5	166	33	6	26	33	1.81
1771--1858	29	3.0	29	68	15	72	39	7	18	34	1.80
2392--2423	16	1.9	17	93	6	57	71	0	0	28	0.86
4411--4495	24	3.5	25	74	18	72	45	0	0	54	1.00
4465--4502	2	19.5	2	94	5	69	50	0	0	50	1.00
4600--4655	24	2.3	24	100	0	112	19	44	12	23	1.84
22052--22080	3	9.7	3	100	0	58	68	0	0	31	0.89
22969--23088	35	3.3	36	84	5	163	41	20	5	31	1.76
23020--23080	21	3.2	21	61	29	55	39	22	6	31	1.80
27568--27687	35	3.3	36	87	5	172	41	20	5	31	1.76
27619--27679	21	3.2	21	61	29	55	40	21	6	31	1.78
32608--32649	18	2.3	19	80	19	54	57	4	0	38	1.20
35530--35625	18	5.4	18	79	7	90	33	7	13	45	1.71
35530--35625	35	2.7	35	76	6	106	33	7	13	45	1.71
38257--38297	11	3.7	11	87	9	57	39	2	2	56	1.26
40378--40456	42	1.9	42	82	7	99	27	21	18	31	1.97
43648--43691	18	2.4	18	81	7	54	29	4	4	61	1.36
44713--44764	23	2.2	24	79	10	61	53	19	15	11	1.71
44722--44774	23	2.3	23	87	3	72	54	13	16	15	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47895--47928	2	16.5	2	87	6	50	52	0	44	2	1.16
50904--50949	16	2.9	16	80	0	56	6	15	0	78	0.95
51515--51593	2	39.5	2	100	0	158	0	50	0	49	1.00
51868--51900	2	16.5	2	100	0	66	48	0	0	51	1.00
52245--52319	29	2.6	29	97	0	141	20	42	28	9	1.82
52329--52364	19	2.0	18	89	10	56	30	38	19	11	1.86
52378--52433	28	2.0	28	100	0	112	35	32	28	3	1.74
52416--52472	28	2.0	28	93	0	96	26	31	33	8	1.87
52461--52555	29	3.3	29	95	0	163	13	30	32	23	1.93
52564--52600	19	1.9	19	100	0	74	27	43	18	10	1.83
52598--52698	49	2.1	48	92	5	168	19	38	18	22	1.93
52909--52947	16	2.3	18	86	8	55	38	0	5	56	1.22
53052--53141	45	2.0	47	85	12	125	40	0	11	48	1.39
53170--53222	12	4.3	12	81	11	63	30	0	16	52	1.44
53203--53278	33	2.3	32	82	12	93	40	0	11	47	1.40
55515--55547	17	1.9	17	100	0	66	48	9	6	36	1.60
55514--55564	14	3.4	14	82	12	57	45	7	7	39	1.62
55542--55585	21	2.1	21	86	0	61	45	4	9	40	1.56
55552--55585	11	3.2	11	83	8	52	47	5	8	38	1.59
55532--55596	14	5.2	13	76	17	50	46	7	7	38	1.61
55703--55729	7	3.9	7	100	0	54	14	14	14	55	1.70
55802--55849	14	3.6	14	81	16	66	47	16	0	35	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55821--55931	48	2.3	48	92	4	179	47	10	0	41	1.38
55918--56005	21	4.3	21	66	18	60	44	15	0	39	1.47
55870--56057	59	3.2	59	93	5	335	45	14	0	39	1.46
59105--59165	28	2.2	28	93	0	104	55	13	0	31	1.38
59142--59190	21	2.3	21	85	3	71	53	16	0	30	1.43
59801--59903	30	3.4	30	87	0	161	10	17	47	24	1.79
59821--59914	20	4.7	20	70	15	77	11	19	46	22	1.81
59881--59913	10	3.3	10	100	0	66	9	18	51	21	1.73
59927--60037	57	1.9	58	94	1	197	9	27	43	19	1.81
59927--60037	29	3.9	29	95	2	197	9	27	43	19	1.81
60254--60365	29	3.9	29	97	0	206	19	43	27	8	1.81
60379--60471	10	9.3	10	70	17	68	22	47	19	10	1.80
60389--60491	30	3.4	30	87	0	161	24	47	17	10	1.79
61108--61151	21	2.1	21	91	0	70	29	0	15	54	1.42
61128--61181	28	1.9	28	96	0	99	29	0	12	57	1.36
64267--64354	25	3.2	25	66	25	70	38	0	17	44	1.49
64276--64360	11	7.6	11	69	16	50	40	0	16	43	1.48
64225--64458	57	4.3	56	83	12	292	39	0	14	46	1.44
64336--64454	47	2.6	47	87	11	167	41	0	11	47	1.40
64368--64472	37	2.9	36	68	19	85	39	0	12	48	1.41
64212--64459	115	2.2	112	81	11	297	39	0	13	47	1.43
64428--64472	12	3.6	13	80	19	60	37	0	17	44	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64287--64489	104	2.0	104	80	11	229	40	1	14	43	1.54
64577--64615	11	3.5	11	85	3	51	51	2	5	41	1.38
64723--64755	17	1.9	17	100	0	66	36	6	9	48	1.60
66623--66678	26	2.1	27	83	3	69	58	10	1	28	1.41
67040--67117	39	1.9	41	82	12	99	51	10	1	37	1.44

Tables:   1

The End!