genome.fa.s253.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000253.1 Hibiscus syriacus cultivar Beakdansim tig00000464_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106800

Tables:   1   

This is table  1  of  1  ( 100 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
341--562	112	2.0	110	93	4	385	49	21	7	22	1.73
1600--1663	2	33.0	2	93	6	114	51	0	0	48	1.00
1872--1921	18	2.7	18	79	14	57	20	6	2	72	1.16
7411--7435	2	12.5	2	100	0	50	48	0	0	52	1.00
8256--8295	16	2.5	16	87	0	62	50	25	0	25	1.50
8890--8942	15	3.5	15	75	10	54	20	20	15	43	1.88
8902--8974	30	2.4	30	97	0	137	23	20	13	42	1.88
10483--10520	16	2.2	18	86	9	53	28	5	15	50	1.66
17658--17720	33	1.9	33	83	6	83	15	34	19	30	1.93
19211--19244	16	2.1	17	94	5	61	35	23	2	38	1.70
21865--21916	26	1.9	27	81	14	63	48	1	0	50	1.12
26417--26454	2	19.0	2	100	0	76	50	0	0	50	1.00
27954--28024	3	24.0	3	79	2	54	57	4	0	38	1.18
27954--28024	21	3.5	20	80	7	72	57	4	0	38	1.18
28403--29336	177	5.3	177	90	0	1350	31	20	16	31	1.94
30810--30919	52	2.1	51	80	3	130	20	20	16	41	1.90
32437--32505	10	6.4	10	78	15	50	1	20	0	78	0.83
32438--32499	20	2.8	20	81	15	70	1	20	0	77	0.85
32438--32507	22	3.1	22	80	10	79	1	21	0	77	0.85
32440--32509	24	2.9	25	83	10	92	1	21	0	77	0.85
39724--39764	19	2.2	19	91	4	66	21	7	53	17	1.67
39939--40030	3	31.3	3	82	4	107	63	0	1	35	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39965--40011	17	2.8	17	93	0	76	68	0	0	31	0.90
44572--44607	2	18.0	2	100	0	72	50	0	0	50	1.00
46050--46120	3	24.0	3	79	2	54	57	4	0	38	1.18
46050--46120	21	3.5	20	80	7	72	57	4	0	38	1.18
46500--47432	177	5.3	177	88	1	1336	31	20	16	31	1.95
46500--47431	353	2.6	351	88	2	1375	31	20	16	31	1.95
48908--49051	52	2.8	51	78	5	148	23	20	16	39	1.92
50570--50649	6	13.3	6	72	17	60	1	21	0	77	0.84
50580--50649	22	3.0	22	86	10	95	0	21	0	78	0.75
50590--50649	16	3.8	16	95	2	104	0	20	0	80	0.72
50592--50651	8	7.6	8	81	3	77	0	18	0	81	0.69
50559--50651	16	6.2	15	81	8	93	1	20	0	78	0.81
50560--50651	24	3.8	23	75	13	64	1	20	0	78	0.82
56203--56856	347	1.9	347	99	0	1281	41	10	8	39	1.70
56847--56872	2	13.0	2	100	0	52	50	0	0	50	1.00
57905--57998	3	31.7	3	83	2	109	59	1	1	38	1.11
62923--63000	21	3.7	21	96	0	138	19	23	17	39	1.92
63026--63075	20	2.5	20	93	0	82	26	32	20	22	1.98
63894--63947	24	2.2	24	93	0	90	22	16	18	42	1.89
66423--66511	20	4.4	20	84	0	115	32	20	20	26	1.97
66549--66627	20	3.9	20	84	1	95	13	17	24	44	1.85
66747--66783	14	2.6	14	100	0	74	48	21	0	29	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68172--68241	21	3.3	21	77	0	77	20	20	37	22	1.95
68245--68290	21	2.4	19	80	16	58	30	15	28	26	1.96
68172--68293	42	2.9	41	76	4	118	23	18	35	22	1.96
68822--68873	20	2.6	20	100	0	104	30	21	19	28	1.97
68952--68988	19	1.9	19	94	0	65	8	16	27	48	1.74
68972--69002	14	2.2	14	94	0	53	12	19	16	51	1.76
68948--69019	19	4.0	19	70	18	64	12	16	20	50	1.78
68958--69032	33	2.3	33	85	0	105	13	20	21	45	1.84
69024--69072	20	2.5	20	90	6	73	18	22	26	32	1.97
69065--69103	20	1.9	21	94	5	71	15	10	23	51	1.73
71022--71144	20	6.2	20	80	1	131	42	22	16	18	1.89
71507--71594	22	4.0	22	87	0	113	19	11	44	25	1.84
71760--71805	20	2.3	20	96	0	83	23	17	30	28	1.97
71901--71946	19	2.4	19	85	3	56	23	15	28	32	1.95
71912--71948	19	1.9	19	94	0	65	24	13	27	35	1.93
72095--72131	18	2.1	18	90	10	58	59	5	5	29	1.42
72405--72497	21	4.5	21	75	4	91	39	17	24	18	1.91
72405--72497	41	2.3	41	98	0	177	39	17	24	18	1.91
72508--72560	20	2.7	20	90	0	79	26	28	18	26	1.98
73076--73156	19	4.5	19	73	16	73	46	24	17	11	1.80
73152--73336	19	10.1	19	75	14	165	11	21	22	44	1.85
73152--73336	33	5.1	38	78	12	165	11	21	22	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73279--73336	20	2.9	20	80	10	64	13	24	18	43	1.87
75393--75459	21	3.2	21	66	6	55	23	35	20	19	1.95
75338--75459	42	2.9	42	78	9	115	23	35	17	23	1.95
76823--76858	14	2.6	14	95	0	63	30	0	25	44	1.54
77041--77167	33	3.9	32	80	8	157	15	21	18	44	1.86
77034--77166	66	2.0	66	94	0	230	17	21	18	43	1.88
79657--79710	24	2.2	24	90	0	81	38	20	16	24	1.92
80770--80818	20	2.5	20	96	0	89	34	24	22	18	1.96
80833--80903	33	2.2	33	81	0	79	21	19	19	39	1.93
80851--80904	14	3.5	14	75	22	54	12	20	18	48	1.81
80846--80923	33	2.4	33	86	0	102	15	23	19	42	1.89
82896--83013	20	6.4	19	74	13	86	42	24	19	13	1.87
82970--83027	14	3.9	14	79	16	71	48	25	17	8	1.75
82954--83032	32	2.4	33	95	2	142	46	24	18	10	1.80
83060--83116	14	3.9	13	77	22	60	10	17	22	49	1.77
83044--83132	31	2.8	32	94	3	153	12	19	21	47	1.82
83117--83171	20	2.8	19	83	8	65	16	23	23	36	1.94
83653--83697	18	2.5	18	88	0	72	13	15	44	26	1.83
85017--85054	20	1.9	20	88	0	58	50	21	15	13	1.78
85318--85361	22	2.0	22	95	0	79	18	15	45	20	1.85
85549--85601	20	2.7	20	93	0	88	24	18	28	28	1.98
85628--85720	20	4.5	21	78	4	100	17	24	18	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85628--85720	41	2.3	41	100	0	186	17	24	18	39	1.91
89959--90033	24	3.1	25	79	11	77	64	4	0	32	1.12
90003--90059	28	2.0	28	83	12	73	64	5	1	28	1.25
92953--92998	19	2.4	19	96	0	83	52	0	10	36	1.37
96088--96116	2	14.5	2	100	0	58	48	0	0	51	1.00
97657--97728	3	23.7	3	94	2	126	34	0	0	65	0.93
102923--102952	15	1.9	15	93	6	51	33	3	0	63	1.11
104615--104640	4	6.5	4	100	0	52	23	0	0	76	0.78
105751--105782	16	2.0	16	93	0	55	65	0	9	25	1.22
106091--106347	45	5.8	44	72	11	143	38	8	13	39	1.75
106090--106341	89	2.8	91	78	8	218	39	8	13	38	1.76
106482--106648	57	2.9	57	80	10	187	37	7	13	41	1.73

Tables:   1

The End!