genome.fa.s2531.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002531.1 Hibiscus syriacus cultivar Beakdansim tig00005145_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116010

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1172--1402	85	2.7	84	79	2	237	35	17	22	24	1.95
1170--1432	43	6.1	43	82	2	208	34	18	22	25	1.96
1539--1588	23	2.2	22	79	10	57	56	6	0	38	1.24
3855--3981	2	64.5	2	84	6	170	0	5	48	45	1.25
4434--4517	43	2.0	42	88	2	123	54	14	19	11	1.70
7159--7201	20	2.2	20	91	0	68	34	20	11	32	1.89
8242--8397	61	2.6	61	89	6	228	27	22	20	29	1.98
21068--21159	32	2.9	31	79	7	96	32	16	18	32	1.93
21067--21190	31	4.0	31	75	5	115	29	16	19	34	1.94
23167--23220	22	2.5	22	96	0	99	42	9	22	25	1.83
26867--26917	23	2.2	23	85	0	66	21	31	19	27	1.97
31600--31714	27	4.3	27	94	0	185	37	10	23	28	1.88
37260--37302	17	2.5	17	82	14	52	44	2	9	44	1.49
39057--39108	20	2.6	20	96	0	95	38	26	13	21	1.90
39099--39196	21	4.8	20	74	10	65	36	21	19	22	1.95
39164--39532	20	18.5	20	84	4	449	34	26	18	20	1.95
40215--40261	24	2.0	24	83	8	60	27	14	19	38	1.91
42736--43057	19	18.4	19	79	17	378	46	18	20	14	1.84
42736--43038	121	2.5	123	85	11	421	46	18	20	14	1.84
42736--43079	121	2.8	113	80	17	317	46	18	20	14	1.84
42803--43095	70	4.2	71	86	6	429	45	17	20	16	1.85
43086--43168	19	4.6	19	79	15	104	15	22	18	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43275--43311	14	2.6	14	91	0	65	45	21	0	32	1.52
45232--45352	19	6.6	19	81	10	126	46	25	18	9	1.80
45232--45352	38	3.3	38	86	9	153	46	25	18	9	1.80
45348--45476	19	7.3	19	75	17	125	8	17	28	45	1.77
45348--45439	33	2.8	33	93	3	150	7	18	28	45	1.76
45520--46264	184	4.0	186	97	1	1425	46	19	12	21	1.83
45520--46264	93	8.1	93	97	2	1425	46	19	12	21	1.83
45520--46264	277	2.7	278	98	1	1430	46	19	12	21	1.83
47964--48053	14	5.7	14	74	23	81	42	23	25	8	1.83
47956--48070	33	3.5	33	95	0	212	45	20	24	9	1.81
47963--48075	19	6.8	18	72	23	88	43	22	24	9	1.83
48087--48141	14	3.6	14	73	21	56	9	25	23	41	1.83
48071--48141	33	2.2	33	94	0	124	8	22	25	43	1.81
48082--48163	33	2.5	33	89	2	119	9	25	21	42	1.84
48094--48182	20	4.8	20	72	19	75	12	24	19	43	1.85
48262--48332	33	2.2	33	92	0	115	47	18	22	11	1.80
48513--48567	22	2.5	22	81	0	74	20	16	40	23	1.91
48710--48902	20	9.6	20	82	5	219	19	19	25	35	1.95
48710--48902	60	3.2	60	83	0	251	19	19	25	35	1.95
48958--49009	20	2.6	20	93	0	86	21	13	25	40	1.89
50336--50416	31	2.6	31	94	3	137	19	7	24	48	1.75
55897--55932	2	18.5	2	94	5	65	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56005--56058	23	2.3	23	100	0	108	48	7	3	40	1.49
59066--59131	27	2.5	26	80	4	78	28	10	4	56	1.53
60065--60101	15	2.3	17	86	9	51	13	5	5	75	1.15
74219--74662	222	2.0	222	99	0	870	43	9	12	35	1.74
76858--76906	18	2.7	18	96	0	89	18	24	30	26	1.98
79913--79957	21	2.1	21	87	0	63	31	28	24	15	1.96
79983--80027	22	2.0	22	82	4	54	31	31	26	11	1.91
80632--80785	31	5.0	31	95	1	265	19	19	22	38	1.93
84438--84482	21	2.1	21	87	0	63	31	28	24	15	1.96
84508--84552	22	2.0	22	82	4	54	31	31	26	11	1.91
85157--85310	31	5.0	31	95	1	256	20	18	22	38	1.93
88777--88861	10	8.7	10	75	19	90	58	21	10	9	1.59
88781--88845	16	4.1	16	91	0	112	58	23	10	7	1.57
92933--92987	24	2.3	25	87	6	78	54	18	9	18	1.69
107251--107301	18	2.8	18	87	0	84	17	23	31	27	1.97
109192--109216	11	2.3	11	100	0	50	8	20	8	64	1.46
109942--110017	32	2.4	32	84	4	91	42	15	14	27	1.86
115221--115310	31	3.1	31	78	18	120	26	13	7	52	1.67
115227--115285	25	2.3	26	91	8	104	27	11	6	54	1.62

Tables:   1

The End!