genome.fa.s2532.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002532.1 Hibiscus syriacus cultivar Beakdansim tig00005147_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96186

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
412--461	21	2.4	21	82	0	64	20	14	30	36	1.91
2400--2437	19	2.0	20	89	5	60	18	21	23	36	1.95
2723--2763	18	2.3	18	91	0	64	17	2	26	53	1.56
5000--5053	24	2.2	24	93	0	90	40	20	18	20	1.91
5000--5067	24	2.8	24	84	0	64	38	20	17	23	1.93
5925--6066	19	7.4	19	69	19	64	33	14	21	30	1.93
5943--6029	19	4.4	20	72	16	74	31	14	21	32	1.94
21071--21095	2	12.5	2	100	0	50	0	52	0	48	1.00
27765--27806	17	2.5	17	80	3	50	50	0	0	50	1.00
28073--28120	23	2.1	23	88	0	69	54	2	2	41	1.24
28493--28535	6	7.2	6	97	0	59	39	0	60	0	0.97
28690--28796	31	3.5	31	84	2	135	34	13	26	26	1.93
31357--31424	31	2.2	31	94	0	118	33	16	29	20	1.94
37418--37489	35	2.1	35	86	0	99	9	31	18	40	1.83
41912--41951	20	2.0	20	90	0	62	45	0	7	47	1.31
42976--43004	15	1.9	15	100	0	58	41	0	13	44	1.44
44215--44503	147	2.0	144	87	3	418	45	20	13	20	1.84
44958--44991	16	2.1	17	88	5	52	50	0	2	47	1.16
45195--45493	53	5.7	52	82	5	293	32	9	18	40	1.82
45206--45485	105	2.6	105	81	3	294	32	8	18	40	1.81
45204--45493	158	1.8	156	82	4	368	32	8	18	40	1.80
46906--46956	24	2.1	24	88	0	75	49	3	9	37	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51548--51603	2	28.0	2	100	0	112	50	0	0	50	1.00
51716--51765	15	3.4	15	73	15	59	46	8	6	40	1.58
51717--51776	29	2.1	29	87	0	84	45	8	11	35	1.71
52149--52256	20	5.3	20	89	2	162	26	26	22	24	2.00
52870--52976	20	5.4	20	80	7	103	14	15	22	46	1.83
56900--57205	149	2.1	148	91	0	495	26	15	22	35	1.94
57181--57241	23	2.7	22	87	2	86	21	26	26	26	1.99
62401--62461	23	2.7	23	92	2	97	21	27	26	24	1.99
63248--63297	18	2.8	18	100	0	100	32	20	6	42	1.76
63445--63492	20	2.4	20	92	0	78	33	27	20	18	1.96
63535--63581	20	2.5	19	89	6	69	14	19	27	38	1.91
64062--64103	21	2.2	19	87	12	59	21	35	19	23	1.96
64086--64167	42	2.0	42	85	4	112	23	36	18	21	1.95
65443--65504	14	4.3	14	77	6	61	37	1	14	46	1.54
65603--65656	20	2.7	20	79	0	63	44	24	18	12	1.85
65699--65949	20	12.9	20	82	6	309	27	18	23	31	1.97
65920--66329	140	2.9	140	96	0	766	42	14	13	29	1.84
66389--66424	18	2.0	18	94	0	63	16	2	25	55	1.55
69023--69076	24	2.2	24	93	0	90	40	20	18	20	1.91
69897--69964	20	3.4	20	79	0	82	25	19	26	29	1.98
84694--84755	2	31.0	2	96	0	115	50	1	0	48	1.10
87888--87933	23	2.0	22	83	8	56	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91007--91152	76	1.9	76	86	5	206	26	8	7	57	1.54
93646--93701	20	2.8	21	78	8	71	32	21	17	28	1.96
93719--93810	41	2.2	41	80	5	105	36	20	19	22	1.95
93832--93874	22	2.0	22	86	4	61	39	11	9	39	1.74
96052--96176	64	1.9	65	85	4	173	32	22	17	27	1.96

Tables:   1

The End!