genome.fa.s2534.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002534.1 Hibiscus syriacus cultivar Beakdansim tig00005150_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86927

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20329--20768	168	2.6	168	84	3	546	33	13	18	34	1.90
24937--25019	37	2.3	36	83	12	107	31	7	6	55	1.51
26935--26974	2	20.0	2	100	0	80	50	0	50	0	1.00
27594--28131	151	3.8	148	78	13	579	22	12	20	45	1.84
27779--28046	133	2.0	131	87	1	383	20	11	20	46	1.82
28219--28477	96	2.7	96	89	4	382	29	11	20	38	1.88
29447--29552	42	2.5	44	83	10	132	19	17	18	43	1.88
30990--31033	16	2.9	15	83	6	61	15	15	9	59	1.61
31050--31133	31	2.7	31	86	0	114	41	16	21	20	1.90
31726--31752	9	3.0	9	100	0	54	77	0	0	22	0.76
33340--33390	2	25.5	2	100	0	102	50	0	0	49	1.00
42720--42877	21	7.8	20	72	7	86	38	25	17	18	1.92
42844--43037	20	9.6	20	81	5	221	35	25	19	19	1.95
42844--43037	60	3.2	60	83	0	253	35	25	19	19	1.95
43418--43488	33	2.2	33	94	0	124	11	23	16	47	1.79
43568--43642	20	3.8	20	78	5	89	44	18	24	13	1.85
43568--43638	19	3.6	19	77	7	79	43	19	23	12	1.86
43561--43665	39	2.9	36	80	14	108	44	20	23	10	1.83
43683--43771	14	5.7	14	75	21	79	8	24	23	42	1.83
43661--43757	19	5.7	18	73	20	84	10	23	22	43	1.84
43666--43779	33	3.5	33	90	2	185	9	22	21	46	1.80
45476--45672	93	2.1	93	97	0	376	23	12	18	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45713--45841	19	7.3	19	72	17	107	44	27	17	10	1.80
45749--45841	33	2.8	32	88	4	141	45	27	18	8	1.78
45713--45841	52	2.5	52	72	14	122	44	27	17	10	1.80
45837--45971	19	7.6	19	73	16	119	11	17	23	46	1.81
45842--45934	33	2.8	33	91	0	150	11	18	21	48	1.80
47896--47931	14	2.6	14	95	0	63	33	0	22	44	1.53
48038--48135	19	5.4	19	84	13	143	45	17	22	14	1.84
48038--48154	53	2.2	53	98	1	227	44	17	23	13	1.85
50472--50496	12	2.1	12	100	0	50	0	28	0	72	0.86
50671--50717	24	2.0	24	87	8	69	38	21	14	25	1.92
51398--51647	20	12.5	20	87	1	268	19	18	24	37	1.94
51640--51735	21	4.7	20	75	12	88	27	15	23	33	1.95
51871--51908	2	19.0	2	100	0	76	50	0	0	50	1.00
55470--55567	8	11.6	8	70	21	51	48	3	3	44	1.33
55470--55567	21	4.6	21	77	6	108	48	3	3	44	1.33
55510--55562	25	2.1	25	86	6	72	49	3	1	45	1.31
55470--55567	44	2.3	41	84	8	117	48	3	3	44	1.33
62217--65265	382	8.0	381	94	1	5173	42	12	8	36	1.73
66528--66554	2	13.5	2	100	0	54	0	48	0	51	1.00
74750--74813	29	2.2	29	100	0	128	45	3	12	39	1.58
77095--77204	19	5.4	19	78	13	94	30	29	6	33	1.82
77838--78119	123	2.3	124	85	4	367	28	19	9	42	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78937--78990	2	27.0	2	100	0	108	50	0	0	50	1.00
79673--79730	21	2.8	21	78	5	55	24	36	29	10	1.88

Tables:   1

The End!