Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002535.1 Hibiscus syriacus cultivar Beakdansim tig00005151_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63838

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
939--965
13
2.1
13
100
0
54
29
40
0
29
1.57
2002--2076
22
3.5
21
87
5
98
12
17
16
54
1.70
6716--6770
3
17.7
3
88
3
74
36
0
0
63
0.95
7157--7182
13
2.0
13
100
0
52
23
30
38
7
1.83
10713--10751
20
2.0
20
84
0
51
30
15
2
51
1.57
10732--10760
12
2.3
13
94
5
51
27
13
6
51
1.66
17431--17504
22
3.4
22
94
0
130
36
9
14
39
1.79
18180--18969
76
10.4
76
97
0
1454
23
19
22
34
1.97
19102--19155
3
17.7
3
96
3
99
35
0
0
64
0.94
23300--23356
2
28.5
2
100
0
114
50
0
0
49
1.00
26145--26213
30
2.2
31
94
5
122
20
28
10
40
1.85
27291--27366
30
2.5
31
86
4
109
18
28
10
42
1.83
28098--28206
55
2.0
55
85
0
146
49
11
23
15
1.76
28684--28751
32
2.2
31
92
5
111
42
11
27
17
1.84
28676--28755
30
2.7
29
86
7
99
41
11
28
18
1.85
29798--29906
55
2.0
55
85
0
146
49
11
23
15
1.76
29825--29909
26
3.2
26
70
15
73
50
10
21
17
1.76
36352--36376
2
12.5
2
100
0
50
52
0
0
48
1.00
39182--39223
22
2.0
21
85
4
57
50
0
7
42
1.30
46716--46752
18
2.0
19
89
5
58
27
8
2
62
1.37
46946--46983
20
1.9
20
94
0
67
57
13
2
26
1.49
48161--48226
20
3.1
21
75
12
71
15
13
16
54
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49743--49788
23
2.0
23
100
0
92
34
21
8
34
1.84
50638--50709
2
36.0
2
78
10
58
41
4
2
51
1.35
51013--51066
23
2.3
23
81
6
65
27
24
22
25
2.00
51310--51380
32
2.2
33
87
5
101
42
15
8
33
1.77
58519--58562
20
2.1
21
87
4
63
31
29
22
15
1.95
59971--60277
146
2.1
146
93
3
519
28
15
21
34
1.94
61688--61736
22
2.2
23
85
3
64
38
8
22
30
1.83
61765--61810
21
2.1
21
84
8
56
39
8
17
34
1.80

Tables:   1

The End!