Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002536.1 Hibiscus syriacus cultivar Beakdansim tig00005152_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91686

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2693--3166
237
2.0
234
88
4
704
39
12
14
32
1.84
4611--4675
33
2.0
33
84
0
85
38
23
13
24
1.91
4644--4839
70
2.8
69
88
1
266
27
18
24
29
1.98
6014--6093
35
2.3
35
86
4
117
45
22
0
32
1.53
6014--6109
35
2.7
35
82
6
88
42
26
2
29
1.66
6278--6709
148
2.9
147
92
2
688
37
8
9
45
1.66
8444--8524
28
2.9
28
92
0
126
17
20
27
34
1.95
9795--9874
35
2.3
35
88
0
124
33
0
25
41
1.56
11362--11394
2
16.5
2
100
0
66
51
0
0
48
1.00
11431--11467
15
2.6
14
91
8
58
59
5
0
35
1.20
11343--11551
12
18.9
11
69
19
100
51
5
3
39
1.42
11475--11549
22
3.3
22
76
18
73
49
6
2
41
1.43
12203--12260
25
2.2
25
79
11
64
50
1
3
44
1.29
12215--12262
23
2.0
25
88
8
73
54
2
4
39
1.32
12267--12301
2
17.5
2
100
0
70
51
0
0
48
1.00
12230--12307
20
4.0
20
74
14
72
51
0
2
46
1.14
18107--18187
2
40.5
2
100
0
162
49
0
0
50
1.00
18284--18319
14
2.6
14
86
0
54
61
0
13
25
1.33
19790--19880
39
2.3
40
83
7
116
21
16
10
50
1.76
19894--20177
129
2.2
129
83
5
351
27
19
16
36
1.93
19930--20217
129
2.2
128
80
6
314
29
19
15
35
1.93
20221--20536
160
2.0
160
89
3
485
28
20
16
35
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20829--21078
101
2.5
100
79
4
234
40
10
17
31
1.84
23134--23269
34
4.0
35
75
18
108
5
16
0
77
0.93
23134--23268
67
2.0
68
81
12
163
5
16
0
78
0.92
23148--23265
45
2.6
48
81
10
124
5
15
0
78
0.93
29692--29770
37
2.1
38
83
2
97
69
2
10
17
1.27
30953--31340
163
2.4
163
85
3
496
29
20
14
35
1.92
33349--33393
23
1.9
23
86
4
63
48
4
13
33
1.62
33457--33618
83
2.0
82
90
6
256
43
13
3
38
1.62
35406--35469
30
2.1
31
91
2
103
46
7
17
28
1.75
59035--59097
28
2.3
27
83
5
72
77
0
14
7
0.97
60302--60417
37
3.2
37
87
4
166
37
17
23
21
1.93
60313--60421
35
3.0
36
88
5
159
37
18
22
22
1.94
60425--60627
55
3.7
55
75
7
162
30
17
23
28
1.97
61031--61055
11
2.3
11
100
0
50
56
0
24
20
1.43
63168--63234
30
2.2
30
83
0
80
38
4
17
38
1.70
63315--63356
17
2.5
17
96
0
75
47
4
26
21
1.70
64213--64251
20
1.9
21
89
5
62
30
5
28
35
1.79
64213--64263
20
2.5
20
84
12
61
31
3
29
35
1.76
65490--65534
22
2.0
22
95
0
81
35
2
13
48
1.54
69305--69344
21
1.9
21
89
0
62
55
7
7
30
1.56
72819--72945
47
2.8
45
87
7
175
32
22
7
37
1.83
73054--73182
59
2.2
59
85
2
170
30
24
17
27
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
76990--77049
17
3.5
17
95
0
102
40
6
18
35
1.77
76987--77067
34
2.4
34
82
0
99
39
11
16
33
1.83
84660--84758
50
2.0
50
84
7
130
35
23
21
20
1.96
89383--89432
19
2.5
20
84
9
68
30
16
0
54
1.42

Tables:   1

The End!