genome.fa.s2537.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002537.1 Hibiscus syriacus cultivar Beakdansim tig00005153_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82594

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1327--1380	24	2.4	22	87	6	72	29	18	22	29	1.97
1339--1442	24	4.4	23	73	10	93	28	21	19	30	1.97
1327--1463	11	11.6	11	73	11	85	27	21	21	29	1.98
1347--1461	60	1.9	60	84	8	153	28	20	20	30	1.98
2394--2421	14	2.0	14	100	0	56	50	7	0	42	1.30
4305--4514	37	5.9	37	76	13	183	41	13	19	25	1.88
4372--4514	36	4.0	36	87	1	189	43	15	18	23	1.87
4372--4514	73	2.0	71	86	2	196	43	15	18	23	1.87
5134--5355	93	2.3	95	83	7	274	31	18	18	31	1.95
8207--8252	21	2.1	22	88	11	69	78	0	6	15	0.95
11991--12152	80	2.0	79	97	1	306	56	3	10	29	1.48
13622--13691	31	2.3	31	84	0	86	38	10	11	40	1.75
23918--23964	23	2.0	23	91	0	76	38	0	0	61	0.96
29128--29363	12	19.1	11	65	20	53	14	8	2	74	1.16
29128--29161	16	2.1	16	88	0	50	14	2	2	79	0.97
29138--29336	9	22.4	9	68	16	64	15	7	3	74	1.16
29083--29333	12	19.2	13	67	20	82	17	7	2	72	1.19
29118--29184	27	2.4	27	78	7	64	20	4	2	71	1.17
29184--29300	32	3.4	36	76	17	122	13	7	3	75	1.15
29128--29333	5	40.4	5	67	20	51	15	7	2	74	1.16
29221--29304	10	8.1	10	71	11	62	11	5	3	78	1.05
29219--29336	62	1.9	61	81	16	145	12	8	2	76	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29287--29356	32	2.3	29	82	7	77	11	12	0	75	1.04
31533--31635	30	3.4	30	89	2	136	32	26	20	21	1.98
31608--31685	31	2.5	31	85	4	95	34	23	20	21	1.97
32912--32956	21	2.1	21	87	0	63	15	24	28	31	1.96
36265--36367	30	3.4	30	91	2	154	32	26	20	21	1.98
36340--36417	31	2.5	31	85	4	95	34	23	20	21	1.97
37641--37685	21	2.1	21	87	0	63	15	24	28	31	1.96
42068--42143	23	3.3	23	94	0	134	21	26	26	26	1.99
42259--42304	2	23.0	2	100	0	92	50	0	0	50	1.00
42439--42473	18	1.9	18	94	0	61	57	0	8	34	1.29
42442--42479	15	2.8	13	88	11	51	57	0	7	34	1.28
47010--47045	14	2.6	14	100	0	72	41	0	25	33	1.55
47251--47334	23	3.7	23	91	0	132	21	26	26	26	1.99
47442--47469	2	14.0	2	100	0	56	50	0	0	50	1.00
47604--47638	18	1.9	18	94	0	61	57	0	8	34	1.29
47607--47644	15	2.8	13	88	11	51	57	0	7	34	1.28
49108--49286	95	1.9	95	89	2	279	32	18	18	30	1.95
50611--50712	32	2.9	36	78	11	113	26	19	12	41	1.87
50611--50848	36	6.9	36	73	16	209	27	19	12	40	1.87
50637--51269	102	6.3	95	78	10	413	27	19	12	40	1.87
50670--50979	65	4.7	65	80	10	367	30	18	11	40	1.86
50861--51016	36	4.5	36	69	18	132	28	19	12	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51030--51210	36	5.2	35	73	17	153	24	21	12	41	1.87
50758--51078	167	1.9	163	93	1	446	28	19	11	41	1.86
52061--53012	482	2.0	467	93	3	1607	35	22	20	21	1.96
53525--53765	4	57.2	4	70	21	65	18	6	1	73	1.11
53526--53854	9	36.3	9	70	19	129	16	6	2	74	1.13
53569--53665	29	3.3	28	78	15	81	18	4	1	76	1.01
53582--53851	5	53.8	5	69	20	88	15	7	2	75	1.11
53526--53764	83	2.8	84	78	11	206	17	6	1	74	1.10
53583--53823	88	2.8	87	78	10	228	15	6	2	75	1.10
53579--53777	19	10.2	19	72	19	67	16	6	1	76	1.04
53581--53873	28	10.4	29	68	21	94	14	7	2	75	1.12
53720--53813	23	4.0	23	75	9	91	14	4	5	75	1.13
53720--53854	71	1.9	69	85	11	186	14	5	3	75	1.13
53692--53804	48	2.3	48	80	10	133	15	6	2	75	1.12
55409--55442	11	3.2	11	83	8	52	67	2	0	29	1.05
56098--56197	17	5.8	17	78	3	101	43	12	10	35	1.75
56098--56199	34	2.9	34	80	8	125	42	11	9	36	1.75
68120--68169	13	3.8	13	81	2	64	72	12	0	16	1.13
68157--68199	21	2.0	21	82	8	52	69	9	2	18	1.26
74858--74917	28	2.1	28	96	0	111	10	23	8	58	1.57
80616--80668	19	2.8	19	72	27	58	37	1	9	50	1.46
82271--82594	74	4.5	73	83	5	390	32	12	14	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82274--82554	147	1.9	148	85	5	390	33	13	13	39	1.83

Tables:   1

The End!