Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002538.1 Hibiscus syriacus cultivar Beakdansim tig00005154_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 352938
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
File 1 of 2
Found at i:974 original size:12 final size:12
Alignment explanation
Indices: 957--983 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
947 ATAACATTGT
957 CAAAATTGTAAA
1 CAAAATTGTAAA
969 CAAAATTGTAAA
1 CAAAATTGTAAA
981 CAA
1 CAA
984 CTTTTTTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.59, C:0.11, G:0.07, T:0.22
Consensus pattern (12 bp):
CAAAATTGTAAA
Found at i:1106 original size:22 final size:23
Alignment explanation
Indices: 1062--1111 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
1052 CGATTAAAGT
*
1062 TCAAATTTAAGCTCGATTTAAAC
1 TCAAATTTAAGCTCGATTCAAAC
* *
1085 TCAAATTT-TGCTTGATTCAAAC
1 TCAAATTTAAGCTCGATTCAAAC
1107 TCAAA
1 TCAAA
1112 CTCAAAGTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
22 16 0.67
23 8 0.33
ACGTcount: A:0.38, C:0.18, G:0.08, T:0.36
Consensus pattern (23 bp):
TCAAATTTAAGCTCGATTCAAAC
Found at i:2442 original size:37 final size:38
Alignment explanation
Indices: 2401--2481 Score: 110
Period size: 37 Copynumber: 2.1 Consensus size: 38
2391 ACAAATTGTT
* *
2401 GTTTCATCCGCCATAGTTTTTAAG-TTCTTTTCTATAC
1 GTTTCATCCACCATAGTTTTCAAGTTTCTTTTCTATAC
* *
2438 GTTTCATCCACCATTGTTTTCAAGTTTTCTTTTCTATAT
1 GTTTCATCCACCATAGTTTTCAAG-TTTCTTTTCTATAC
2477 GTTTC
1 GTTTC
2482 TTGTTACATA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 21 0.55
39 17 0.45
ACGTcount: A:0.17, C:0.21, G:0.10, T:0.52
Consensus pattern (38 bp):
GTTTCATCCACCATAGTTTTCAAGTTTCTTTTCTATAC
Found at i:3909 original size:14 final size:14
Alignment explanation
Indices: 3890--3918 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
3880 ATCAACTAAA
3890 AATATTAATATTTT
1 AATATTAATATTTT
3904 AATATTAATATTTT
1 AATATTAATATTTT
3918 A
1 A
3919 GGTTGCGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
AATATTAATATTTT
Found at i:9216 original size:30 final size:30
Alignment explanation
Indices: 9125--9216 Score: 89
Period size: 30 Copynumber: 3.1 Consensus size: 30
9115 TTGCTACAGT
* * *
9125 GACCACCATAGGT-TCCAAGAGTACACGGC
1 GACCTCCATAGGTCTCCAAGAGCACACGAC
* *
9154 GACCTCCAAAGGTCTCC-AGCAGCACACAAC
1 GACCTCCATAGGTCTCCAAG-AGCACACGAC
** *
9184 GACCTTTATAGGTCTCCAAGAGCATACGAC
1 GACCTCCATAGGTCTCCAAGAGCACACGAC
9214 GAC
1 GAC
9217 TTATGGAGCA
Statistics
Matches: 50, Mismatches: 10, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
29 13 0.26
30 35 0.70
31 2 0.04
ACGTcount: A:0.32, C:0.33, G:0.21, T:0.15
Consensus pattern (30 bp):
GACCTCCATAGGTCTCCAAGAGCACACGAC
Found at i:10859 original size:26 final size:25
Alignment explanation
Indices: 10829--10887 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 25
10819 TTTTTTTAAA
* *
10829 ATTTAAAATGATTAATGGTATTAATT
1 ATTTAAAATAATTAATGATATT-ATT
* *
10855 ATTTATATTAATTAATGATATTATT
1 ATTTAAAATAATTAATGATATTATT
10880 ATATTAAA
1 AT-TTAAA
10888 TAAAAACAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
25 5 0.19
26 22 0.81
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.49
Consensus pattern (25 bp):
ATTTAAAATAATTAATGATATTATT
Found at i:11311 original size:35 final size:35
Alignment explanation
Indices: 11272--11348 Score: 136
Period size: 35 Copynumber: 2.2 Consensus size: 35
11262 TCTAAACCTT
11272 AAATTGAAATATTTTAGAATTTAGAGTTTAGAATG
1 AAATTGAAATATTTTAGAATTTAGAGTTTAGAATG
* *
11307 AAATTGAATTATTTTAGAATTTAGGGTTTAGAATG
1 AAATTGAAATATTTTAGAATTTAGAGTTTAGAATG
11342 AAATTGA
1 AAATTGA
11349 GGATTATTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 40 1.00
ACGTcount: A:0.42, C:0.00, G:0.18, T:0.40
Consensus pattern (35 bp):
AAATTGAAATATTTTAGAATTTAGAGTTTAGAATG
Found at i:11857 original size:18 final size:18
Alignment explanation
Indices: 11834--11873 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
11824 CATTACTAGC
11834 ACCAACCGATAAACAAGT
1 ACCAACCGATAAACAAGT
11852 ACCAACCGATAAACAAGT
1 ACCAACCGATAAACAAGT
11870 ACCA
1 ACCA
11874 GTCTCTCTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.50, C:0.30, G:0.10, T:0.10
Consensus pattern (18 bp):
ACCAACCGATAAACAAGT
Found at i:15253 original size:29 final size:29
Alignment explanation
Indices: 15211--15281 Score: 124
Period size: 29 Copynumber: 2.4 Consensus size: 29
15201 ACAAGAAGAG
*
15211 GCCTTTTCTCAACTCCATAAAGTAATGAA
1 GCCTTTTCTCAACTCCATAAAGCAATGAA
*
15240 GCCTTTTCTCAACTCCATAAAGCAATGGA
1 GCCTTTTCTCAACTCCATAAAGCAATGAA
15269 GCCTTTTCTCAAC
1 GCCTTTTCTCAAC
15282 CCCTAACTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.30, C:0.28, G:0.11, T:0.31
Consensus pattern (29 bp):
GCCTTTTCTCAACTCCATAAAGCAATGAA
Found at i:20279 original size:18 final size:18
Alignment explanation
Indices: 20248--20285 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
20238 TATGTGACAT
20248 AAGAAACAAGGAAATTAA
1 AAGAAACAAGGAAATTAA
* *
20266 AAGAAGCAATGAAATTAA
1 AAGAAACAAGGAAATTAA
20284 AA
1 AA
20286 AAAAAACTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.66, C:0.05, G:0.16, T:0.13
Consensus pattern (18 bp):
AAGAAACAAGGAAATTAA
Found at i:42679 original size:85 final size:83
Alignment explanation
Indices: 42445--42815 Score: 371
Period size: 85 Copynumber: 4.4 Consensus size: 83
42435 AACCAGGGGC
* * * *
42445 CTCAATTATAAAGATAGAAAGTGAGATTG-AAAAAA-AG-GGTCTCAATTATAAAGATAAAAAGT
1 CTCAATTATAAAGGTA-AAAATGAGATTGAAAAAAATAGAGG-CTCAATTATAAAGGTAAAATGT
* **
42507 GAGATTAAAAAAATTAA-AA
64 GAGATTACAAAAATTAAGGG
* * * * * *
42526 CATCAATTGTAAAGGTAAAAAGTGGGATTG-AAAAAAGAGGGGTTTAATTATAAAGGTAAAATGT
1 C-TCAATTATAAAGGTAAAAA-TGAGATTGAAAAAAATAGAGGCTCAATTATAAAGGTAAAATGT
42590 GAGATTAC-AAAATTAAGGG
64 GAGATTACAAAAATTAAGGG
* *
42609 TCTCAATTATAAAGGTAAAAATTGTGATTGAAAAAAAATAGAGGCTCAATTATAAAGGTAAATTG
1 -CTCAATTATAAAGGTAAAAA-TGAGATTG-AAAAAAATAGAGGCTCAATTATAAAGGTAAAATG
*
42674 TGAGATTACAAAAATTAGGGG
63 TGAGATTACAAAAATTAAGGG
* * * **
42695 CCTCCATTATAAAGGTAAACAATGAAATTGAAAGAAATA-AGAGCTCGGTTATAAAGGTAAAATG
1 -CTCAATTATAAAGGTAAA-AATGAGATTGAAAAAAATAGAG-GCTCAATTATAAAGGTAAAATG
*
42759 TGAGATTACAAAAATGAAGGG
63 TGAGATTACAAAAATTAAGGG
*
42780 CTCAATTATAAAAGT-AAAATGTTAGATTGAAAAAAA
1 CTCAATTATAAAGGTAAAAATG--AGATTGAAAAAAA
42816 ATTAAAAACT
Statistics
Matches: 243, Mismatches: 34, Indels: 23
0.81 0.11 0.08
Matches are distributed among these distances:
81 4 0.02
82 38 0.16
83 54 0.22
84 29 0.12
85 83 0.34
86 33 0.14
87 2 0.01
ACGTcount: A:0.49, C:0.06, G:0.20, T:0.25
Consensus pattern (83 bp):
CTCAATTATAAAGGTAAAAATGAGATTGAAAAAAATAGAGGCTCAATTATAAAGGTAAAATGTGA
GATTACAAAAATTAAGGG
Found at i:42814 original size:42 final size:42
Alignment explanation
Indices: 42445--42814 Score: 298
Period size: 42 Copynumber: 8.8 Consensus size: 42
42435 AACCAGGGGC
*
42445 CTCAATTATAAAGATAGAAA-GTGAGATTG-AAAAA--AAGGG
1 CTCAATTATAAAGGTA-AAATGTGAGATTGAAAAAATTAAGGG
* * * **
42484 TCTCAATTATAAAGATAAAAAGTGAGATTAAAAAAATTAA-AA
1 -CTCAATTATAAAGGTAAAATGTGAGATTGAAAAAATTAAGGG
* * * * *
42526 CATCAATTGTAAAGGTAAAAAGTGGGATTGAAAAAA-GAGGGG
1 C-TCAATTATAAAGGTAAAATGTGAGATTGAAAAAATTAAGGG
* * *
42568 TTTAATTATAAAGGTAAAATGTGAGATT-ACAAAATTAAGGG
1 CTCAATTATAAAGGTAAAATGTGAGATTGAAAAAATTAAGGG
* *
42609 TCTCAATTATAAAGGTAAAAAT-TGTGATTGAAAAAA-AATAGAGG
1 -CTCAATTATAAAGGT-AAAATGTGAGATTGAAAAAATTA-AG-GG
* *
42653 CTCAATTATAAAGGTAAATTGTGAGATT-ACAAAAATTAGGGG
1 CTCAATTATAAAGGTAAAATGTGAGATTGA-AAAAATTAAGGG
* * * *
42695 CCTCCATTATAAAGGTAAACA-ATGAAATTGAAAGAAA-TAAGAG
1 -CTCAATTATAAAGGTAAA-ATGTGAGATTGAAA-AAATTAAGGG
** *
42738 CTCGGTTATAAAGGTAAAATGTGAGATT-ACAAAAATGAAGGG
1 CTCAATTATAAAGGTAAAATGTGAGATTGA-AAAAATTAAGGG
* *
42780 CTCAATTATAAAAGTAAAATGTTAGATTGAAAAAA
1 CTCAATTATAAAGGTAAAATGTGAGATTGAAAAAA
42815 AATTAAAAAC
Statistics
Matches: 263, Mismatches: 44, Indels: 44
0.75 0.13 0.13
Matches are distributed among these distances:
39 3 0.01
40 29 0.11
41 39 0.15
42 114 0.43
43 71 0.27
44 7 0.03
ACGTcount: A:0.49, C:0.06, G:0.20, T:0.25
Consensus pattern (42 bp):
CTCAATTATAAAGGTAAAATGTGAGATTGAAAAAATTAAGGG
Found at i:45374 original size:20 final size:20
Alignment explanation
Indices: 45349--45397 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
45339 ATATATTATA
45349 TTTTCGAGTTGTTCACGAGC
1 TTTTCGAGTTGTTCACGAGC
45369 TTTTCGAGTTGTTCACGAGC
1 TTTTCGAGTTGTTCACGAGC
45389 TTTTCGAGT
1 TTTTCGAGT
45398 CGAATATCGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.14, C:0.18, G:0.24, T:0.43
Consensus pattern (20 bp):
TTTTCGAGTTGTTCACGAGC
Found at i:50016 original size:62 final size:62
Alignment explanation
Indices: 49919--50042 Score: 248
Period size: 62 Copynumber: 2.0 Consensus size: 62
49909 ACTAACAGGA
49919 ACTTAGATTAGAAATGGTCATGGTTAGAAGTTCAAGGAACTGCATTACAGCCAAGTACATAT
1 ACTTAGATTAGAAATGGTCATGGTTAGAAGTTCAAGGAACTGCATTACAGCCAAGTACATAT
49981 ACTTAGATTAGAAATGGTCATGGTTAGAAGTTCAAGGAACTGCATTACAGCCAAGTACATAT
1 ACTTAGATTAGAAATGGTCATGGTTAGAAGTTCAAGGAACTGCATTACAGCCAAGTACATAT
50043 CCAATCTCTA
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 62 1.00
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.27
Consensus pattern (62 bp):
ACTTAGATTAGAAATGGTCATGGTTAGAAGTTCAAGGAACTGCATTACAGCCAAGTACATAT
Found at i:53972 original size:30 final size:30
Alignment explanation
Indices: 53936--53992 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
53926 CTGTGTGATA
53936 GCTTAGCGTGTGTTCCATAGAGCATGGTCC
1 GCTTAGCGTGTGTTCCATAGAGCATGGTCC
53966 GCTTAGCGTGTGTTCCATAGAGCATGG
1 GCTTAGCGTGTGTTCCATAGAGCATGG
53993 CCCATTTAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.18, C:0.21, G:0.32, T:0.30
Consensus pattern (30 bp):
GCTTAGCGTGTGTTCCATAGAGCATGGTCC
Found at i:57127 original size:21 final size:21
Alignment explanation
Indices: 57098--57150 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
57088 ATTCTGACTA
57098 TCGCATTGCGATTTCCCAAAT
1 TCGCATTGCGATTTCCCAAAT
* * *
57119 TCGCGTTGCGATTTTCCTAAT
1 TCGCATTGCGATTTCCCAAAT
*
57140 TCGCAATGCGA
1 TCGCATTGCGA
57151 ATACGTAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTCCCAAAT
Found at i:57165 original size:20 final size:20
Alignment explanation
Indices: 57140--57233 Score: 152
Period size: 20 Copynumber: 4.7 Consensus size: 20
57130 TTTTCCTAAT
57140 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
*
57160 TCGCAATGCGATTACGTAAA
1 TCGCAATGCGAATACGTAAA
* *
57180 TCGCAATGCGAATTAGGAAAA
1 TCGCAATGCGAA-TACGTAAA
57201 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
57221 TCGCAATGCGAAT
1 TCGCAATGCGAAT
57234 CTGACTATCG
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
20 49 0.73
21 18 0.27
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.21
Consensus pattern (20 bp):
TCGCAATGCGAATACGTAAA
Found at i:57170 original size:41 final size:40
Alignment explanation
Indices: 57140--57233 Score: 152
Period size: 41 Copynumber: 2.3 Consensus size: 40
57130 TTTTCCTAAT
57140 TCGCAATGCGAATACGTAAATCGCAATGCGATTACGTAAA
1 TCGCAATGCGAATACGTAAATCGCAATGCGATTACGTAAA
* * *
57180 TCGCAATGCGAATTAGGAAAATCGCAATGCGAATACGTAAA
1 TCGCAATGCGAA-TACGTAAATCGCAATGCGATTACGTAAA
57221 TCGCAATGCGAAT
1 TCGCAATGCGAAT
57234 CTGACTATCG
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
40 13 0.26
41 37 0.74
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.21
Consensus pattern (40 bp):
TCGCAATGCGAATACGTAAATCGCAATGCGATTACGTAAA
Found at i:57839 original size:21 final size:21
Alignment explanation
Indices: 57778--57856 Score: 85
Period size: 20 Copynumber: 3.9 Consensus size: 21
57768 TTCTAAACTT
57778 AAAATCGCAAC-ATGA-AAATG
1 AAAATCGCAACGA-GAGAAATG
57798 AAAATCGCAAC-ACGA-AAATG
1 AAAATCGCAACGA-GAGAAATG
**
57818 ACTATCGCAACGAGAGAAATG
1 AAAATCGCAACGAGAGAAATG
*
57839 AAAATTGCAACGAGAGAA
1 AAAATCGCAACGAGAGAA
57857 TCGCAACGCG
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
20 30 0.59
21 21 0.41
ACGTcount: A:0.52, C:0.16, G:0.19, T:0.13
Consensus pattern (21 bp):
AAAATCGCAACGAGAGAAATG
Found at i:57874 original size:33 final size:33
Alignment explanation
Indices: 57833--57902 Score: 122
Period size: 33 Copynumber: 2.1 Consensus size: 33
57823 CGCAACGAGA
57833 GAAATGAAAATTGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATTGCAACGAGAGAATCGCAACGC
* *
57866 GAAATGAAAATTGCAACGATATAATCGCAACGC
1 GAAATGAAAATTGCAACGAGAGAATCGCAACGC
57899 GAAA
1 GAAA
57903 CCAAAATCGC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.47, C:0.17, G:0.21, T:0.14
Consensus pattern (33 bp):
GAAATGAAAATTGCAACGAGAGAATCGCAACGC
Found at i:57962 original size:33 final size:33
Alignment explanation
Indices: 57918--57995 Score: 129
Period size: 33 Copynumber: 2.4 Consensus size: 33
57908 ATCGCATTGT
57918 GATTTTCATTTCGCGCTGAGATTCTCTCGTTGC
1 GATTTTCATTTCGCGCTGAGATTCTCTCGTTGC
* * *
57951 GATTTTAATTTCGCGTTGCGATTCTCTCGTTGC
1 GATTTTCATTTCGCGCTGAGATTCTCTCGTTGC
57984 GATTTTCATTTC
1 GATTTTCATTTC
57996 AACCAAAAGA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.13, C:0.22, G:0.19, T:0.46
Consensus pattern (33 bp):
GATTTTCATTTCGCGCTGAGATTCTCTCGTTGC
Found at i:59913 original size:94 final size:93
Alignment explanation
Indices: 59681--60053 Score: 542
Period size: 94 Copynumber: 4.1 Consensus size: 93
59671 TATATTGCTT
* *
59681 AGTAAATTTATTCGGTTGCTGCCAATACTGCTAAAC--TGT-TT-ATTAACACTGTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
*
59742 ATTTGTCTTT-TGTTGTCTTTTGGTTGA
66 ATTTGTCTTTGTTTTGTCTTTTGGTTGA
* *
59769 AGTAAATTTATTCAGTTACTG-CAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
59833 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 ATTTGTCTTTGTTTTGTCTTTTGGTTG-A
* * *
59862 AGTAAATTTGTTCGGTTGCTGTCAATTCTGCTAAATTGTGTATTCTTTAACACTGTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
*
59927 ATTTGTCTTTGTTTTATCTTTTGGTTGAA
66 ATTTGTCTTTGTTTTGTCTTTTGGTTG-A
* * * * * *
59956 AGTAAATTTGTCCGTTTGCTGCCAATTTTGCTAAACTGTGTATTCTTTAATACTCTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
*
60021 ATTGGTCTTTGTTTTGTCTTTTGGTTGA
66 ATTTGTCTTTGTTTTGTCTTTTGGTTGA
60049 AGTAA
1 AGTAA
60054 TGCAATACAT
Statistics
Matches: 259, Mismatches: 19, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
87 13 0.05
88 19 0.07
89 3 0.01
90 2 0.01
91 29 0.11
92 15 0.06
93 25 0.10
94 153 0.59
ACGTcount: A:0.22, C:0.12, G:0.19, T:0.47
Consensus pattern (93 bp):
AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
ATTTGTCTTTGTTTTGTCTTTTGGTTGA
Found at i:60179 original size:20 final size:20
Alignment explanation
Indices: 60150--60187 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
60140 GGTTGAAATG
*
60150 AAAATTGCAACGCGAAACCA
1 AAAATCGCAACGCGAAACCA
60170 AAAATCGCAACGCGAAAC
1 AAAATCGCAACGCGAAAC
60188 TATAATCGCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.50, C:0.26, G:0.16, T:0.08
Consensus pattern (20 bp):
AAAATCGCAACGCGAAACCA
Found at i:60215 original size:19 final size:19
Alignment explanation
Indices: 60193--60300 Score: 100
Period size: 19 Copynumber: 5.8 Consensus size: 19
60183 GAAACTATAA
60193 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
60212 TCGCATTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
60226 TCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
60245 TCGCGTTGCGATTTTTCGTT
1 TCGCGTTGCGA-TTTTCATT
**
60265 TCGCGTTGCGATAGTCATTTT
1 TCGCGTTGCGATTTTCA--TT
*
60286 TCTCGTTGCGATTTT
1 TCGCGTTGCGATTTT
60301 AAGTTCTAGA
Statistics
Matches: 70, Mismatches: 11, Indels: 14
0.74 0.12 0.15
Matches are distributed among these distances:
14 9 0.13
16 3 0.04
17 3 0.04
19 23 0.33
20 18 0.26
21 14 0.20
ACGTcount: A:0.10, C:0.21, G:0.21, T:0.47
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:60777 original size:21 final size:21
Alignment explanation
Indices: 60753--60819 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
60743 TCATTCCTCG
60753 AGAGTCCCCTCCCACCGTTCA
1 AGAGTCCCCTCCCACCGTTCA
* * ** * *
60774 AGAGGCCACTGTCATCGTTGA
1 AGAGTCCCCTCCCACCGTTCA
*
60795 AGAGGT-CCCTCCCACCATTCA
1 AGA-GTCCCCTCCCACCGTTCA
60816 AGAG
1 AGAG
60820 CCCGATTCAC
Statistics
Matches: 32, Mismatches: 13, Indels: 3
0.67 0.27 0.06
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.24, C:0.36, G:0.21, T:0.19
Consensus pattern (21 bp):
AGAGTCCCCTCCCACCGTTCA
Found at i:60777 original size:42 final size:42
Alignment explanation
Indices: 60701--60819 Score: 107
Period size: 42 Copynumber: 2.8 Consensus size: 42
60691 GACTCACCTG
* * * * * * *
60701 TCATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCCCCTA
1 TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTA
*
60743 TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTG
1 TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTA
* * *
60785 TCA-TCGTTGAAGAGGT-CCCTCCCACCATTCAAGAG
1 TCATTCCTCG-AGA-GTCCCCTCCCACCGTTCAAGAG
60820 CCCGATTCAC
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
41 4 0.06
42 58 0.91
43 2 0.03
ACGTcount: A:0.23, C:0.36, G:0.18, T:0.23
Consensus pattern (42 bp):
TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTA
Found at i:62186 original size:14 final size:14
Alignment explanation
Indices: 62167--62202 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
62157 ATTGTTTAAT
62167 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
62181 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
62195 TGATTTGT
1 TGATTTGT
62203 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:62391 original size:19 final size:19
Alignment explanation
Indices: 62339--62385 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
62329 TCACAACGAC
62339 AAAATCGCAACGCGAAACT
1 AAAATCGCAACGCGAAACT
62358 AAAATCGCAACGCGAAACT
1 AAAATCGCAACGCGAAACT
*
62377 AAATTCGCA
1 AAAATCGCA
62386 TTGCGATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.47, C:0.26, G:0.15, T:0.13
Consensus pattern (19 bp):
AAAATCGCAACGCGAAACT
Found at i:62402 original size:19 final size:19
Alignment explanation
Indices: 62380--62509 Score: 101
Period size: 19 Copynumber: 7.6 Consensus size: 19
62370 CGAAACTAAA
62380 TTCGCATTGCGATTTTCAT
1 TTCGCATTGCGATTTTCAT
* *
62399 TTCGCTTTGCGA--TTC-C
1 TTCGCATTGCGATTTTCAT
*
62415 CTCG--TTGCGATTTTCAT
1 TTCGCATTGCGATTTTCAT
62432 TTCGCATTGCGA--TTC-T
1 TTCGCATTGCGATTTTCAT
*
62448 CTCG--TTGCGATTTTCAT
1 TTCGCATTGCGATTTTCAT
62465 TTCGCATTGCGA--TTC-T
1 TTCGCATTGCGATTTTCAT
* *
62481 CTCG--TTGTGATTTTCAT
1 TTCGCATTGCGATTTTCAT
62498 TTCGCATTGCGA
1 TTCGCATTGCGA
62510 ACGTCATTTC
Statistics
Matches: 85, Mismatches: 11, Indels: 30
0.67 0.09 0.24
Matches are distributed among these distances:
14 17 0.20
16 20 0.24
17 20 0.24
19 28 0.33
ACGTcount: A:0.12, C:0.24, G:0.18, T:0.45
Consensus pattern (19 bp):
TTCGCATTGCGATTTTCAT
Found at i:62428 original size:33 final size:33
Alignment explanation
Indices: 62386--62509 Score: 221
Period size: 33 Copynumber: 3.8 Consensus size: 33
62376 TAAATTCGCA
* *
62386 TTGCGATTTTCATTTCGCTTTGCGATTCCCTCG
1 TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
62419 TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
62452 TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
*
62485 TTGTGATTTTCATTTCGCATTGCGA
1 TTGCGATTTTCATTTCGCATTGCGA
62510 ACGTCATTTC
Statistics
Matches: 88, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 88 1.00
ACGTcount: A:0.12, C:0.23, G:0.19, T:0.46
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
Found at i:62457 original size:14 final size:14
Alignment explanation
Indices: 62405--62492 Score: 50
Period size: 14 Copynumber: 5.6 Consensus size: 14
62395 TCATTTCGCT
*
62405 TTGCGATTCCCTCG
1 TTGCGATTCTCTCG
*
62419 TTGCGATTTTCATTTCG
1 TTGCGA--TTC-TCTCG
62436 CATTGCGATTCTCTCG
1 --TTGCGATTCTCTCG
*
62452 TTGCGATTTTCATTTCG
1 TTGCGA--TTC-TCTCG
62469 CATTGCGATTCTCTCG
1 --TTGCGATTCTCTCG
*
62485 TTGTGATT
1 TTGCGATT
62493 TTCATTTCGC
Statistics
Matches: 58, Mismatches: 6, Indels: 20
0.69 0.07 0.24
Matches are distributed among these distances:
14 19 0.33
16 14 0.24
17 13 0.22
19 12 0.21
ACGTcount: A:0.11, C:0.24, G:0.19, T:0.45
Consensus pattern (14 bp):
TTGCGATTCTCTCG
Found at i:62570 original size:20 final size:20
Alignment explanation
Indices: 62504--62570 Score: 57
Period size: 20 Copynumber: 3.3 Consensus size: 20
62494 TCATTTCGCA
*
62504 TTGCGAACGTCATTTCCGCG
1 TTGCGAACGTCATTTCCGTG
* **
62524 TTGCGATA-GACA-TTAAGATG
1 TTGCGA-ACGTCATTTCCG-TG
62544 ATTGCGAACGTCATTTCCGTG
1 -TTGCGAACGTCATTTCCGTG
62565 TTGCGA
1 TTGCGA
62571 TAGTCAAATG
Statistics
Matches: 35, Mismatches: 7, Indels: 10
0.67 0.13 0.19
Matches are distributed among these distances:
19 3 0.09
20 17 0.49
21 12 0.34
22 3 0.09
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.31
Consensus pattern (20 bp):
TTGCGAACGTCATTTCCGTG
Found at i:65068 original size:24 final size:24
Alignment explanation
Indices: 65034--65087 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
65024 CTGAAAAATC
65034 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* * *
65058 ATCAAAGTCCGGGTATTTACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
65082 ATCAAA
1 ATCAAA
65088 TTTCGAATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.22
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:65993 original size:40 final size:41
Alignment explanation
Indices: 65949--66082 Score: 130
Period size: 41 Copynumber: 3.3 Consensus size: 41
65939 AGAATCTCGT
65949 TGCGATTTAC-TAAATCACAATGCGATTTAC-TAAATCGCAA
1 TGCGATTTACGTAAATCACAATGCGATTTACGT-AATCGCAA
* * * *
65989 TGCGA-ATACGTAAATCGCATTGCGATTTACGTAATCGCAT
1 TGCGATTTACGTAAATCACAATGCGATTTACGTAATCGCAA
* * * * * * * *
66029 TGCGATTTTCCTAATTCGCATTGTGATTTACGTAATCGTAT
1 TGCGATTTACGTAAATCACAATGCGATTTACGTAATCGCAA
66070 TGCGATTTACGTA
1 TGCGATTTACGTA
66083 TTCGCATTGC
Statistics
Matches: 79, Mismatches: 12, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
39 3 0.04
40 35 0.44
41 41 0.52
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (41 bp):
TGCGATTTACGTAAATCACAATGCGATTTACGTAATCGCAA
Found at i:66043 original size:20 final size:20
Alignment explanation
Indices: 65948--66098 Score: 164
Period size: 20 Copynumber: 7.5 Consensus size: 20
65938 CAGAATCTCG
*
65948 TTGCGATTTAC-TAAATCACA
1 TTGCGATTTACGT-AATCGCA
*
65968 ATGCGATTTAC-TAAATCGCA
1 TTGCGATTTACGT-AATCGCA
* *
65988 ATGCGA-ATACGTAAATCGCA
1 TTGCGATTTACGT-AATCGCA
66008 TTGCGATTTACGTAATCGCA
1 TTGCGATTTACGTAATCGCA
* *
66028 TTGCGATTTTCCTAATTCGCA
1 TTGCGATTTACGTAA-TCGCA
* *
66049 TTGTGATTTACGTAATCGTA
1 TTGCGATTTACGTAATCGCA
*
66069 TTGCGATTTACGTATTCGCA
1 TTGCGATTTACGTAATCGCA
66089 TTGCGATTTA
1 TTGCGATTTA
66099 GGAAAATCGC
Statistics
Matches: 114, Mismatches: 14, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
19 3 0.03
20 89 0.78
21 22 0.19
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (20 bp):
TTGCGATTTACGTAATCGCA
Found at i:66058 original size:41 final size:40
Alignment explanation
Indices: 65969--66098 Score: 147
Period size: 41 Copynumber: 3.2 Consensus size: 40
65959 TAAATCACAA
* * * *
65969 TGCGATTTAC-TAAATCGCAATGCGA-ATACGTAAATCGCAT
1 TGCGATTTACGT-AATCGCATTGCGATTTACCT-ATTCGCAT
*
66009 TGCGATTTACGTAATCGCATTGCGATTTTCCTAATTCGCAT
1 TGCGATTTACGTAATCGCATTGCGATTTACCT-ATTCGCAT
* * *
66050 TGTGATTTACGTAATCGTATTGCGATTTACGTATTCGCAT
1 TGCGATTTACGTAATCGCATTGCGATTTACCTATTCGCAT
66090 TGCGATTTA
1 TGCGATTTA
66099 GGAAAATCGC
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
40 38 0.49
41 40 0.51
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.37
Consensus pattern (40 bp):
TGCGATTTACGTAATCGCATTGCGATTTACCTATTCGCAT
Found at i:66076 original size:61 final size:61
Alignment explanation
Indices: 65948--66097 Score: 180
Period size: 61 Copynumber: 2.5 Consensus size: 61
65938 CAGAATCTCG
* *
65948 TTGCGATTTAC-TAAATCACAATGCGA-TTTACTAAATCGCAATGCGAATACGTAAATCGCA
1 TTGCGATTTACGT-AATCGCATTGCGATTTTACTAAATCGCAATGCGAATACGTAAATCGCA
* * * * * *
66008 TTGCGATTTACGTAATCGCATTGCGATTTTCCTAATTCGCATTGTGATTTACGT-AATCGTA
1 TTGCGATTTACGTAATCGCATTGCGATTTTACTAAATCGCAATGCGA-ATACGTAAATCGCA
*
66069 TTGCGATTTACGTATTCGCATTGCGATTT
1 TTGCGATTTACGTAATCGCATTGCGATTT
66098 AGGAAAATCG
Statistics
Matches: 78, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
60 22 0.28
61 51 0.65
62 5 0.06
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (61 bp):
TTGCGATTTACGTAATCGCATTGCGATTTTACTAAATCGCAATGCGAATACGTAAATCGCA
Found at i:66687 original size:24 final size:23
Alignment explanation
Indices: 66642--66687 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
66632 CGAAATAATA
* **
66642 TATTTATTAAAAAATATTATTTT
1 TATTTAATAAAAAATAGGATTTT
66665 TATTTAATAAAAAATAGGGATTT
1 TATTTAATAAAAAATA-GGATTT
66688 AAATAACAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.46, C:0.00, G:0.07, T:0.48
Consensus pattern (23 bp):
TATTTAATAAAAAATAGGATTTT
Found at i:75273 original size:3 final size:3
Alignment explanation
Indices: 75265--75290 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
75255 TCAACATCAA
75265 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
75291 ACAAGTCTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:83044 original size:20 final size:20
Alignment explanation
Indices: 83019--83092 Score: 85
Period size: 20 Copynumber: 3.6 Consensus size: 20
83009 TTTTCCCAAT
*
83019 TCGCAATGCGAATAAGTAAA
1 TCGCAACGCGAATAAGTAAA
** *
83039 TCGCAACGCGAATTGGGAAAA
1 TCGCAACGCGAA-TAAGTAAA
* *
83060 TCACAATGCGAATAAGTAAA
1 TCGCAACGCGAATAAGTAAA
83080 TCGCAACGCGAAT
1 TCGCAACGCGAAT
83093 TGGGAAAATC
Statistics
Matches: 42, Mismatches: 11, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
20 27 0.64
21 15 0.36
ACGTcount: A:0.42, C:0.19, G:0.22, T:0.18
Consensus pattern (20 bp):
TCGCAACGCGAATAAGTAAA
Found at i:83067 original size:41 final size:41
Alignment explanation
Indices: 83022--83102 Score: 162
Period size: 41 Copynumber: 2.0 Consensus size: 41
83012 TCCCAATTCG
83022 CAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAATCA
1 CAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAATCA
83063 CAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAATC
1 CAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAATC
83103 GCAACGAGAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.43, C:0.17, G:0.22, T:0.17
Consensus pattern (41 bp):
CAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAATCA
Found at i:83070 original size:21 final size:21
Alignment explanation
Indices: 83036--83108 Score: 94
Period size: 21 Copynumber: 3.5 Consensus size: 21
83026 GCGAATAAGT
83036 AAATCGCAACGCGAATTGGGA
1 AAATCGCAACGCGAATTGGGA
* * ** *
83057 AAATCACAATGCGAA-TAAGT
1 AAATCGCAACGCGAATTGGGA
83077 AAATCGCAACGCGAATTGGGA
1 AAATCGCAACGCGAATTGGGA
83098 AAATCGCAACG
1 AAATCGCAACG
83109 AGATACTTAC
Statistics
Matches: 41, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
20 15 0.37
21 26 0.63
ACGTcount: A:0.42, C:0.19, G:0.23, T:0.15
Consensus pattern (21 bp):
AAATCGCAACGCGAATTGGGA
Found at i:83149 original size:20 final size:20
Alignment explanation
Indices: 83101--83152 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
83091 ATTGGGAAAA
* *
83101 TCGCAACGAGATACTTACTT
1 TCGCAACGCGATACTGACTT
83121 TCGCAACGCGATACTGACTT
1 TCGCAACGCGATACTGACTT
83141 TCGCAACGCGAT
1 TCGCAACGCGAT
83153 TTACATAGCG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (20 bp):
TCGCAACGCGATACTGACTT
Found at i:83709 original size:19 final size:19
Alignment explanation
Indices: 83671--83738 Score: 82
Period size: 20 Copynumber: 3.5 Consensus size: 19
83661 TTCGAGAATG
83671 AAAATCGCAACGCGGAAATA
1 AAAATCGCAACGC-GAAATA
**
83691 ACTATCGCAACGCGAAATA
1 AAAATCGCAACGCGAAATA
**
83710 AAAATTCGCAACGCGAAACC
1 AAAA-TCGCAACGCGAAATA
83730 AAAATCGCA
1 AAAATCGCA
83739 TTGCGATTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
19 13 0.32
20 28 0.68
ACGTcount: A:0.47, C:0.25, G:0.16, T:0.12
Consensus pattern (19 bp):
AAAATCGCAACGCGAAATA
Found at i:83780 original size:20 final size:19
Alignment explanation
Indices: 83734--83899 Score: 127
Period size: 20 Copynumber: 9.1 Consensus size: 19
83724 GAAACCAAAA
*
83734 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
83753 TCGCGTTGCGATTTTTATT
1 TCGCGTTGCGATTTTCATT
83772 TCGCGGTTGCGATTTTCATT
1 TCGC-GTTGCGATTTTCATT
*
83792 TCGCGTTGCGATTGTC---
1 TCGCGTTGCGATTTTCATT
* **
83808 T-G-GTCGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
*
83825 TCGTGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* **
83839 TCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
*
83858 TCCGCGTTGCGATTCTCATT
1 T-CGCGTTGCGATTTTCATT
*
83878 ATCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
83898 TC
1 TC
83900 AACCAAAAGA
Statistics
Matches: 118, Mismatches: 16, Indels: 26
0.74 0.10 0.16
Matches are distributed among these distances:
14 19 0.16
15 1 0.01
16 3 0.03
17 3 0.03
18 1 0.01
19 41 0.35
20 49 0.42
21 1 0.01
ACGTcount: A:0.12, C:0.22, G:0.22, T:0.44
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:83815 original size:39 final size:39
Alignment explanation
Indices: 83739--83815 Score: 111
Period size: 39 Copynumber: 2.0 Consensus size: 39
83729 CAAAATCGCA
* **
83739 TTGCGATTTTCATTTCGCGTTGCGATTTTTATTTCGCGG
1 TTGCGATTTTCATTTCGCGTTGCGATTTCTAGGTCGCGG
83778 TTGCGATTTTCATTTCGCGTTGCGATTGTCT-GGTCGCG
1 TTGCGATTTTCATTTCGCGTTGCGATT-TCTAGGTCGCG
83816 ATAGTCATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
39 32 0.94
40 2 0.06
ACGTcount: A:0.09, C:0.19, G:0.26, T:0.45
Consensus pattern (39 bp):
TTGCGATTTTCATTTCGCGTTGCGATTTCTAGGTCGCGG
Found at i:83824 original size:33 final size:33
Alignment explanation
Indices: 83787--83874 Score: 131
Period size: 33 Copynumber: 2.6 Consensus size: 33
83777 GTTGCGATTT
* *
83787 TCATTTCGCGTTGCGATTGTCTGGTCGCGATAG
1 TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
* *
83820 TCATTTCGTGTTGCGATTCTCTCGTTGCGATAG
1 TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
83853 TCATTTCCGCGTTGCGATTCTC
1 TCATTT-CGCGTTGCGATTCTC
83875 ATTATCTCGT
Statistics
Matches: 49, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
33 35 0.71
34 14 0.29
ACGTcount: A:0.11, C:0.24, G:0.25, T:0.40
Consensus pattern (33 bp):
TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
Found at i:85959 original size:42 final size:42
Alignment explanation
Indices: 85899--85982 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 42
85889 GCCCGACTCG
* * *
85899 CCTATCATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCC
1 CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
* * *
85941 CCTATCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCC
1 CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
85983 ATTGTCATCG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.21, C:0.39, G:0.17, T:0.23
Consensus pattern (42 bp):
CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
Found at i:87399 original size:14 final size:14
Alignment explanation
Indices: 87380--87415 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
87370 ATTGTTTAAT
87380 TGATTTGTAAAAGG
1 TGATTTGTAAAAGG
*
87394 TGATTTGTAAAAGT
1 TGATTTGTAAAAGG
87408 TGATTTGT
1 TGATTTGT
87416 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGG
Found at i:87617 original size:19 final size:19
Alignment explanation
Indices: 87595--87745 Score: 71
Period size: 19 Copynumber: 8.7 Consensus size: 19
87585 CGAAATTAAA
87595 TTCGCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
87614 TTCGCATTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
* * *
87629 -CCTCGTTGCGATTTTCAC
1 TTCGCGTTGCGATTTTCAT
* *
87647 TTCGCATTGCGA-----AA
1 TTCGCGTTGCGATTTTCAT
*
87661 TTAGCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
87680 TTCGCATTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
*
87695 -TCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
* ** *
87713 TTCGCATTGCGATAGTAAT
1 TTCGCGTTGCGATTTTCAT
87732 TTCCGCGTTGCGAT
1 TT-CGCGTTGCGAT
87746 GGACATTAAG
Statistics
Matches: 95, Mismatches: 21, Indels: 31
0.65 0.14 0.21
Matches are distributed among these distances:
14 28 0.29
16 6 0.06
17 6 0.06
19 45 0.47
20 10 0.11
ACGTcount: A:0.15, C:0.23, G:0.21, T:0.41
Consensus pattern (19 bp):
TTCGCGTTGCGATTTTCAT
Found at i:87641 original size:33 final size:32
Alignment explanation
Indices: 87599--87725 Score: 184
Period size: 33 Copynumber: 3.9 Consensus size: 32
87589 ATTAAATTCG
87599 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
1 CGTTGCGATTTTCATTTCGCATTGCGATT-CCT
* **
87632 CGTTGCGATTTTCACTTCGCATTGCGAAATT-AG
1 CGTTGCGATTTTCATTTCGCATTGCG--ATTCCT
87665 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTC-CT
87698 CGTTGCGATTTTCATTTCGCATTGCGAT
1 CGTTGCGATTTTCATTTCGCATTGCGAT
87726 AGTAATTTCC
Statistics
Matches: 84, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
31 3 0.04
33 78 0.93
35 3 0.04
ACGTcount: A:0.15, C:0.24, G:0.20, T:0.42
Consensus pattern (32 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCCT
Found at i:87688 original size:66 final size:66
Alignment explanation
Indices: 87592--87724 Score: 239
Period size: 66 Copynumber: 2.0 Consensus size: 66
87582 ACGCGAAATT
*
87592 AAATTCGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCACTTCGCATTGC
1 AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCACTTCGCATTGC
87657 G
66 G
* *
87658 AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGC
1 AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCACTTCGCATTGC
87723 G
66 G
87724 A
1 A
87725 TAGTAATTTC
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
66 64 1.00
ACGTcount: A:0.17, C:0.23, G:0.20, T:0.41
Consensus pattern (66 bp):
AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCACTTCGCATTGC
G
Found at i:89380 original size:24 final size:24
Alignment explanation
Indices: 89346--89399 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
89336 CTGAAACATC
* *
89346 ATCAAAATCCGTGTATTGACCAAT
1 ATCAAAATCCGGGTATTGACCAAG
*
89370 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGGGTATTGACCAAG
89394 ATCAAA
1 ATCAAA
89400 TTTCGAATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.24
Consensus pattern (24 bp):
ATCAAAATCCGGGTATTGACCAAG
Found at i:90459 original size:20 final size:20
Alignment explanation
Indices: 90434--90491 Score: 98
Period size: 20 Copynumber: 2.9 Consensus size: 20
90424 ATTCATTTGA
90434 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
90454 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
* *
90474 TTATCGCAACGAGAAAAT
1 CTATCGCAACGCGAAAAT
90492 CGCAATGCGA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.17
Consensus pattern (20 bp):
CTATCGCAACGCGAAAATGG
Found at i:90551 original size:19 final size:19
Alignment explanation
Indices: 90510--90573 Score: 84
Period size: 19 Copynumber: 3.6 Consensus size: 19
90500 GAAATGAAAA
90510 TCGCATTGCGATTTTC---
1 TCGCATTGCGATTTTCATT
90526 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
90543 TCGCATTGCGATTTCCATT
1 TCGCATTGCGATTTTCATT
90562 TCGCATTGCGAT
1 TCGCATTGCGAT
90574 AGTCTGTTTT
Statistics
Matches: 42, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
14 11 0.26
16 3 0.07
17 3 0.07
19 25 0.60
ACGTcount: A:0.14, C:0.23, G:0.19, T:0.44
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:92598 original size:20 final size:19
Alignment explanation
Indices: 92563--92629 Score: 89
Period size: 19 Copynumber: 3.5 Consensus size: 19
92553 GAAACTTAAA
92563 ATCGCAACGCGAAATGACT
1 ATCGCAACGCGAAATGACT
*
92582 ATCGCAACGCGGAAATGGCT
1 ATCGCAACGC-GAAATGACT
* **
92602 ATCGCAATGCGAAATGAAA
1 ATCGCAACGCGAAATGACT
92621 ATCGCAACG
1 ATCGCAACG
92630 ACAAAATCGC
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
19 24 0.59
20 17 0.41
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.15
Consensus pattern (19 bp):
ATCGCAACGCGAAATGACT
Found at i:92637 original size:14 final size:14
Alignment explanation
Indices: 92618--92675 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
92608 ATGCGAAATG
92618 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
92632 AAAATCGCAACGCGAA
1 AAAATCGCAA--CGAC
92648 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAC
92664 AAAATCGCAACG
1 AAAATCGCAACG
92676 CGAAACACAA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 21 0.55
16 8 0.21
18 9 0.24
ACGTcount: A:0.48, C:0.26, G:0.17, T:0.09
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:92660 original size:32 final size:33
Alignment explanation
Indices: 92602--92680 Score: 142
Period size: 32 Copynumber: 2.4 Consensus size: 33
92592 GGAAATGGCT
*
92602 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
92635 ATCGCAACGCGAAATG-AAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
92667 ATCGCAACGCGAAA
1 ATCGCAACGCGAAA
92681 CACAAATCGC
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
32 30 0.67
33 15 0.33
ACGTcount: A:0.47, C:0.24, G:0.19, T:0.10
Consensus pattern (33 bp):
ATCGCAACGCGAAATGAAAATCGCAACGACAAA
Found at i:92709 original size:19 final size:17
Alignment explanation
Indices: 92687--92782 Score: 78
Period size: 19 Copynumber: 5.6 Consensus size: 17
92677 GAAACACAAA
92687 TCGCATTGCGATTTTCATT
1 TCGC-TTGCGA-TTTCATT
*
92706 TCGCGTTGCGATTT--TG
1 TCGC-TTGCGATTTCATT
92722 TCG-TTGCGATTTCATT
1 TCGCTTGCGATTTCATT
*
92738 TCGCGTTGCGATTT--TG
1 TCGC-TTGCGATTTCATT
92754 TCG-TTGCGATTTTCATT
1 TCGCTTGCGA-TTTCATT
92771 TCGCATTGCGAT
1 TCGC-TTGCGAT
92783 AGCCATTTCC
Statistics
Matches: 63, Mismatches: 5, Indels: 19
0.72 0.06 0.22
Matches are distributed among these distances:
14 15 0.24
15 3 0.05
16 12 0.19
17 4 0.06
18 13 0.21
19 16 0.25
ACGTcount: A:0.11, C:0.20, G:0.23, T:0.46
Consensus pattern (17 bp):
TCGCTTGCGATTTCATT
Found at i:92728 original size:14 final size:14
Alignment explanation
Indices: 92709--92766 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
92699 TTTCATTTCG
92709 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
92723 CGTTGCGATTTCATTT
1 CGTTGCGATTT--TGT
92739 CGCGTTGCGATTTTGT
1 --CGTTGCGATTTTGT
92755 CGTTGCGATTTT
1 CGTTGCGATTTT
92767 CATTTCGCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 23 0.61
16 4 0.11
18 11 0.29
ACGTcount: A:0.09, C:0.17, G:0.26, T:0.48
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:92773 original size:33 final size:33
Alignment explanation
Indices: 92692--92782 Score: 166
Period size: 32 Copynumber: 2.8 Consensus size: 33
92682 ACAAATCGCA
92692 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
92725 TTGCGA-TTTCATTTCGCGTTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
*
92757 TTGCGATTTTCATTTCGCATTGCGAT
1 TTGCGATTTTCATTTCGCGTTGCGAT
92783 AGCCATTTCC
Statistics
Matches: 56, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
32 32 0.57
33 24 0.43
ACGTcount: A:0.11, C:0.19, G:0.23, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
Found at i:92801 original size:20 final size:19
Alignment explanation
Indices: 92767--92820 Score: 72
Period size: 20 Copynumber: 2.8 Consensus size: 19
92757 TTGCGATTTT
*
92767 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
92786 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
*
92806 CATTTCGTGTTGCGA
1 CATTTCGCGTTGCGA
92821 AAGTAAACTA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
19 14 0.45
20 17 0.55
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.35
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:92819 original size:19 final size:19
Alignment explanation
Indices: 92755--92820 Score: 78
Period size: 19 Copynumber: 3.4 Consensus size: 19
92745 GCGATTTTGT
**
92755 CGTTGCGATTTTCATTTCG
1 CGTTGCGATAGTCATTTCG
* *
92774 CATTGCGATAGCCATTTCCG
1 CGTTGCGATAGTCATTT-CG
92794 CGTTGCGATAGTCATTTCG
1 CGTTGCGATAGTCATTTCG
*
92813 TGTTGCGA
1 CGTTGCGA
92821 AAGTAAACTA
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
19 22 0.56
20 17 0.44
ACGTcount: A:0.15, C:0.23, G:0.24, T:0.38
Consensus pattern (19 bp):
CGTTGCGATAGTCATTTCG
Found at i:93319 original size:18 final size:18
Alignment explanation
Indices: 93293--93337 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
93283 GTCGATCAGA
* *
93293 TGATGGCTCTGGGTGGGG
1 TGATGGCTCTGGGCGAGG
*
93311 TGATAGCTCTGGGCGAGG
1 TGATGGCTCTGGGCGAGG
93329 TGATGGCTC
1 TGATGGCTC
93338 CCGAAGTGGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.11, C:0.16, G:0.47, T:0.27
Consensus pattern (18 bp):
TGATGGCTCTGGGCGAGG
Found at i:94884 original size:22 final size:22
Alignment explanation
Indices: 94859--94902 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
94849 GATTTAGATA
94859 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGTCGGAGATGGG
94881 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGTCGGAGATGGG
94903 TGAGAGAGTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.18, C:0.14, G:0.45, T:0.23
Consensus pattern (22 bp):
GACGGATTTCGTCGGAGATGGG
Found at i:95183 original size:20 final size:20
Alignment explanation
Indices: 95090--95183 Score: 91
Period size: 20 Copynumber: 4.7 Consensus size: 20
95080 CATTATGTAA
* *
95090 ATCGCGTTGCGAAAGTCAGT
1 ATCGCGTTGCGATAGTAAGT
*
95110 ATCGCGTTGCGAAAGTAAGT
1 ATCGCGTTGCGATAGTAAGT
* * *
95130 ATCTCGTTGCGATTTTGT-ATT
1 ATCGCGTTGCGA--TAGTAAGT
*
95151 ATCGCATTGCGATAGTAAGT
1 ATCGCGTTGCGATAGTAAGT
*
95171 ATCGCATTGCGAT
1 ATCGCGTTGCGAT
95184 TTTCCCAATT
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
19 3 0.05
20 45 0.73
21 12 0.19
22 2 0.03
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (20 bp):
ATCGCGTTGCGATAGTAAGT
Found at i:95201 original size:21 final size:21
Alignment explanation
Indices: 95172--95264 Score: 91
Period size: 20 Copynumber: 4.5 Consensus size: 21
95162 ATAGTAAGTA
95172 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
* * **
95193 TCGCGTTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCCAAT
*
95213 TCGCATTGCAATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
* * **
95234 TCGCGTTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCCAAT
95254 TCGCATTGCGA
1 TCGCATTGCGA
95265 ATTGGGAAAA
Statistics
Matches: 56, Mismatches: 15, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
20 31 0.55
21 25 0.45
ACGTcount: A:0.18, C:0.25, G:0.17, T:0.40
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCCAAT
Found at i:95202 original size:41 final size:41
Alignment explanation
Indices: 95111--95245 Score: 139
Period size: 41 Copynumber: 3.3 Consensus size: 41
95101 AAAGTCAGTA
* * * ** *
95111 TCGCGTTGCGAAAGTAAGTATCTCGTTGCGATTTT-GTATT
1 TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
*
95151 ATCGCATTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
1 -TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
* ** *
95193 TCGCGTTGCGAT-TTACTTATTCGCATTGCAATTTTCCCAAT
1 TCGCGTTGCGATAGTAAGTA-TCGCATTGCGATTTTCCCAAT
95234 TCGCGTTGCGAT
1 TCGCGTTGCGAT
95246 TTACTTATTC
Statistics
Matches: 80, Mismatches: 12, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
40 4 0.05
41 74 0.93
42 2 0.03
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (41 bp):
TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
Found at i:95246 original size:41 final size:41
Alignment explanation
Indices: 95172--95267 Score: 174
Period size: 41 Copynumber: 2.3 Consensus size: 41
95162 ATAGTAAGTA
*
95172 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCAATTTTCCCAATTCGCGTTGCGATTTACTTAT
95213 TCGCATTGCAATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCAATTTTCCCAATTCGCGTTGCGATTTACTTAT
95254 TCGCATTGCGAATT
1 TCGCATTGC-AATT
95268 GGGAAAATCG
Statistics
Matches: 53, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 49 0.92
42 4 0.08
ACGTcount: A:0.19, C:0.24, G:0.17, T:0.41
Consensus pattern (41 bp):
TCGCATTGCAATTTTCCCAATTCGCGTTGCGATTTACTTAT
Found at i:95597 original size:103 final size:101
Alignment explanation
Indices: 95388--95579 Score: 330
Period size: 103 Copynumber: 1.9 Consensus size: 101
95378 CGCATTGCGA
95388 TTTTGTTGGTCATTTTGGCAAATCCGAAAAAAGTTGGTTAAAATCGTATATTATATGGGATTTTT
1 TTTTGTTGGTCATTTTGGCAAATCCGAAAAAAGTTGGTTAAAATCGTATATTATATGGGATTTTT
95453 GGTCAAGGTTATTTTCTCTTGCGTTATCGATTAGCGAT
66 GGTCAAGGTTATTTTCTCTTGCGTTATCGATTA--GAT
*
95491 TTTTGTTGGTCATTTTGTCAAATCCGAAAAAAGTTGGTTAAAATCGTATATTATATGGGATTTTT
1 TTTTGTTGGTCATTTTGGCAAATCCGAAAAAAGTTGGTTAAAATCGTATATTATATGGGATTTTT
95556 GGTCACTGAGGTTATTTTCTCTTG
66 GGTCA---AGGTTATTTTCTCTTG
95580 TTGTTTTTAT
Statistics
Matches: 85, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
103 69 0.81
106 16 0.19
ACGTcount: A:0.25, C:0.10, G:0.21, T:0.44
Consensus pattern (101 bp):
TTTTGTTGGTCATTTTGGCAAATCCGAAAAAAGTTGGTTAAAATCGTATATTATATGGGATTTTT
GGTCAAGGTTATTTTCTCTTGCGTTATCGATTAGAT
Found at i:99503 original size:4 final size:4
Alignment explanation
Indices: 99494--99518 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
99484 TGTTCAACTG
99494 TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA T
99519 ACATGCATGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:100483 original size:20 final size:20
Alignment explanation
Indices: 100458--100499 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
100448 GAACTAAATG
100458 GATAAAAAAGAGTACACCAT
1 GATAAAAAAGAGTACACCAT
100478 GATAAAAAAGAGTACACCAT
1 GATAAAAAAGAGTACACCAT
100498 GA
1 GA
100500 GTTGTTATGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.55, C:0.14, G:0.17, T:0.14
Consensus pattern (20 bp):
GATAAAAAAGAGTACACCAT
Found at i:104392 original size:2 final size:2
Alignment explanation
Indices: 104385--104417 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
104375 GATTCAACTT
104385 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
104418 TGTCCAAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:104486 original size:31 final size:30
Alignment explanation
Indices: 104443--104512 Score: 77
Period size: 31 Copynumber: 2.3 Consensus size: 30
104433 TAAAGTAAAC
* * * *
104443 TTTATGTGTTTAATATTTTCTCTTTTATATT
1 TTTAAGTGTTTAACATTTTCAC-GTTATATT
* *
104474 TTTAGGTGTTTAACGTTTTCACGTTATATT
1 TTTAAGTGTTTAACATTTTCACGTTATATT
104504 TTTAAGTGT
1 TTTAAGTGT
104513 CTAAGTGCCG
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
30 15 0.45
31 18 0.55
ACGTcount: A:0.20, C:0.07, G:0.13, T:0.60
Consensus pattern (30 bp):
TTTAAGTGTTTAACATTTTCACGTTATATT
Found at i:104723 original size:6 final size:6
Alignment explanation
Indices: 104712--104764 Score: 106
Period size: 6 Copynumber: 8.8 Consensus size: 6
104702 GACCAATAAT
104712 TGCCTC TGCCTC TGCCTC TGCCTC TGCCTC TGCCTC TGCCTC TGCCTC
1 TGCCTC TGCCTC TGCCTC TGCCTC TGCCTC TGCCTC TGCCTC TGCCTC
104760 TGCCT
1 TGCCT
104765 AAACCCCTAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 47 1.00
ACGTcount: A:0.00, C:0.49, G:0.17, T:0.34
Consensus pattern (6 bp):
TGCCTC
Found at i:105365 original size:22 final size:22
Alignment explanation
Indices: 105340--105383 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
105330 AATATCAAAC
*
105340 AATAATAAAATTAATACAAAAT
1 AATAATAAAAATAATACAAAAT
105362 AATAATAAAAATAATACAAAAT
1 AATAATAAAAATAATACAAAAT
105384 CACACTCAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.25
Consensus pattern (22 bp):
AATAATAAAAATAATACAAAAT
Found at i:108383 original size:3 final size:3
Alignment explanation
Indices: 108377--108452 Score: 98
Period size: 3 Copynumber: 24.7 Consensus size: 3
108367 TCATTTAAAT
** *
108377 TTA TTA TTA TTA TTA TTA AAA TTA TTA TTA TTA TTA TTA GTA TTTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA
*
108423 TTA TTA TTA TTA ATA TTA TATA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA T-TA TTA TTA TT
108453 TAATAAATAA
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
3 58 0.92
4 5 0.08
ACGTcount: A:0.37, C:0.00, G:0.01, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:108969 original size:15 final size:16
Alignment explanation
Indices: 108949--108980 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
108939 ACGACAAGAA
108949 AAAAAAACAGA-AAAG
1 AAAAAAACAGAGAAAG
108964 AAAAAAACAGAGAAAG
1 AAAAAAACAGAGAAAG
108980 A
1 A
108981 GAACACAGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.78, C:0.06, G:0.16, T:0.00
Consensus pattern (16 bp):
AAAAAAACAGAGAAAG
Found at i:110759 original size:20 final size:21
Alignment explanation
Indices: 110736--110787 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 21
110726 AGAAATTAAA
110736 AATTCATTTATTT-AATTTTT
1 AATTCATTTATTTAAATTTTT
* *
110756 AATTCTTTTCTTTCAAATTTTT
1 AATTCATTTATTT-AAATTTTT
110778 -ATT-ATTTATT
1 AATTCATTTATT
110788 ATTTTTATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
20 16 0.62
21 3 0.12
22 7 0.27
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.65
Consensus pattern (21 bp):
AATTCATTTATTTAAATTTTT
Found at i:120179 original size:54 final size:54
Alignment explanation
Indices: 120115--120324 Score: 330
Period size: 54 Copynumber: 3.9 Consensus size: 54
120105 AGAAAACTTG
* *
120115 GCAGAAGCCACAGTAAAGGATGAATGTGTTGTCAAATGTTTTACGAACATCTGA
1 GCAGAAGCCACAGGAAAAGATGAATGTGTTGTCAAATGTTTTACGAACATCTGA
*
120169 GCAGAAGCCACAGTAAAAGATGAATGTGTTGTCAAATGTTTTACGAACATCTGA
1 GCAGAAGCCACAGGAAAAGATGAATGTGTTGTCAAATGTTTTACGAACATCTGA
* * * * * *
120223 ACAGAAACCACAGGAAAGGATGAATGTGTGGTCAAATATTTTATGAACATCTGA
1 GCAGAAGCCACAGGAAAAGATGAATGTGTTGTCAAATGTTTTACGAACATCTGA
*
120277 GCAGAAGCCACAGGAAAAGATGAATGTATTGTCAAATGTTTTACGAAC
1 GCAGAAGCCACAGGAAAAGATGAATGTGTTGTCAAATGTTTTACGAAC
120325 CAGTGATTAT
Statistics
Matches: 141, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 141 1.00
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.25
Consensus pattern (54 bp):
GCAGAAGCCACAGGAAAAGATGAATGTGTTGTCAAATGTTTTACGAACATCTGA
Found at i:121499 original size:76 final size:76
Alignment explanation
Indices: 121373--122238 Score: 1678
Period size: 76 Copynumber: 11.4 Consensus size: 76
121363 CTATTTCCCA
121373 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
121438 AGCCTTCGGGT
66 AGCCTTCGGGT
121449 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
121514 AGCCTTCGGGT
66 AGCCTTCGGGT
121525 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
121590 AGCCTTCGGGT
66 AGCCTTCGGGT
121601 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
121666 ATCCTTCGGGT
66 AGCCTTCGGGT
121677 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
121742 AGCCTTCGGGT
66 AGCCTTCGGGT
121753 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
121818 AGCCTTCGGGT
66 AGCCTTCGGGT
121829 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
121894 ATCCTTCGGGT
66 AGCCTTCGGGT
121905 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
121970 AGCCTTCGGGT
66 AGCCTTCGGGT
*
121981 CATCTGTAAGCCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
122046 AGCCTTCGGGT
66 AGCCTTCGGGT
*
122057 CATCTGTAAGCCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
122122 ATCCTTCGGGT
66 AGCCTTCGGGT
122133 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
122198 ATCCTTCGGGT
66 AGCCTTCGGGT
122209 CATCTGTAAGTCCTTCAGTGCATGATGTTT
1 CATCTGTAAGTCCTTCAGTGCATGATGTTT
122239 TAAAACATTT
Statistics
Matches: 783, Mismatches: 7, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
76 783 1.00
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.36
Consensus pattern (76 bp):
CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
AGCCTTCGGGT
Found at i:122376 original size:3 final size:3
Alignment explanation
Indices: 122370--122445 Score: 98
Period size: 3 Copynumber: 24.7 Consensus size: 3
122360 TCATTTAAAT
** *
122370 TTA TTA TTA TTA TTA TTA AAA TTA TTA TTA TTA TTA TTA GTA TTTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA
*
122416 TTA TTA TTA TTA ATA TTA TATA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA T-TA TTA TTA TT
122446 TAATAAATAA
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
3 58 0.92
4 5 0.08
ACGTcount: A:0.37, C:0.00, G:0.01, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:122962 original size:15 final size:16
Alignment explanation
Indices: 122942--122973 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
122932 ACGACAAGAA
122942 AAAAAAACAGA-AAAG
1 AAAAAAACAGAGAAAG
122957 AAAAAAACAGAGAAAG
1 AAAAAAACAGAGAAAG
122973 A
1 A
122974 GAACACAGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.78, C:0.06, G:0.16, T:0.00
Consensus pattern (16 bp):
AAAAAAACAGAGAAAG
Found at i:125615 original size:23 final size:23
Alignment explanation
Indices: 125583--125627 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
125573 AAAAATAGAG
* *
125583 AAAACATGTCATAAAGGCATAAA
1 AAAACATGTCAAAAAGACATAAA
*
125606 AAAACGTGTCAAAAAGACATAA
1 AAAACATGTCAAAAAGACATAA
125628 TTATTCTTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.58, C:0.13, G:0.13, T:0.16
Consensus pattern (23 bp):
AAAACATGTCAAAAAGACATAAA
Found at i:130396 original size:36 final size:36
Alignment explanation
Indices: 130347--130458 Score: 126
Period size: 36 Copynumber: 3.2 Consensus size: 36
130337 CAAAGATTGG
* *
130347 TGTTTTAAGAGAAACTGTCTCAAGAGAGACAAAATT
1 TGTTTCAAAAGAAACTGTCTCAAGAGAGACAAAATT
*
130383 TGTTTCAAAAGAAACTGTCTC-A-AGA-A-AAACTT
1 TGTTTCAAAAGAAACTGTCTCAAGAGAGACAAAATT
* * *
130415 AG-TTCTAAAAGAAACTGTCTCAAGGGAGACGAAATT
1 TGTTTC-AAAAGAAACTGTCTCAAGAGAGACAAAATT
130451 TGTTTCAA
1 TGTTTCAA
130459 GGACAAAATA
Statistics
Matches: 62, Mismatches: 8, Indels: 12
0.76 0.10 0.15
Matches are distributed among these distances:
31 3 0.05
32 21 0.34
33 2 0.03
34 5 0.08
35 2 0.03
36 26 0.42
37 3 0.05
ACGTcount: A:0.41, C:0.13, G:0.18, T:0.28
Consensus pattern (36 bp):
TGTTTCAAAAGAAACTGTCTCAAGAGAGACAAAATT
Found at i:130444 original size:68 final size:66
Alignment explanation
Indices: 130289--130458 Score: 189
Period size: 68 Copynumber: 2.5 Consensus size: 66
130279 TTTTTTCAAT
* * * *** *
130289 AGAAACTGTCTCAAGGGAGGCAAAATTTTGTTTCAAGAGAAACATATTCAAAGATTGGTGTTTTA
1 AGAAACTGTCTCAAGGGAGACAAAA-TTTGTTTCAAAAGAAACATATTCAAAAAAACGTGTTCTA
*
130354 AG
65 AA
* * *
130356 AGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAAAGAAAC-TGTCTCAAGAAAAACTTAGTTC
1 AGAAACTGTCTCAAGGGAGACAAAATTTGTTTCAAAAGAAACATAT-TCAA-AAAAACGT-GTTC
130420 TAAA
63 TAAA
*
130424 AGAAACTGTCTCAAGGGAGACGAAATTTGTTTCAA
1 AGAAACTGTCTCAAGGGAGACAAAATTTGTTTCAA
130459 GGACAAAATA
Statistics
Matches: 87, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
65 2 0.02
66 20 0.23
67 26 0.30
68 39 0.45
ACGTcount: A:0.41, C:0.13, G:0.19, T:0.27
Consensus pattern (66 bp):
AGAAACTGTCTCAAGGGAGACAAAATTTGTTTCAAAAGAAACATATTCAAAAAAACGTGTTCTAA
A
Found at i:131132 original size:124 final size:124
Alignment explanation
Indices: 130985--131393 Score: 350
Period size: 124 Copynumber: 3.3 Consensus size: 124
130975 CTCCTTTGAG
*
130985 TTGGATATCATTCGTCGTGAAGTTGAAATCCAATATAGAGATGTATGTTGCTTGTGTGCACGATT
1 TTGGATATCCTTCGTCGTGAAGTTGAAATCCAATATAGAGATGTATGTTGCTTGTGTGCACGATT
*
131050 TCCTTCGTCATGAAGTTGAAACCGTGGGTGGCCCCTTCGTCGTGAAGTTGAGCTTGGAA
66 TCCTTCGTCGTGAAGTTGAAACCGTGGGTGGCCCCTTCGTCGTGAAGTTGAGCTTGGAA
* * * * *
131109 TTGGATATCCTTCGTCGTGAAGTTGAAATCCAA-GTA-AGTTGTATTGTT--TCGAGT-C-CAAT
1 TTGGATATCCTTCGTCGTGAAGTTGAAATCCAATATAGAGATGTA-TGTTGCTTGTGTGCACGAT
* * * * * *** ** ** ** *
131168 ATCCTCCGTCGTGAAGTTGAAA--TTGGTTCTGAAACTGGGAAGTTTATTGACA-TACACTCCTT
65 TTCCTTCGTCGTGAAGTTGAAACCGTGGGT-GGCCCCT---TCG--TCGTGA-AGTTGA--GC--
* *
131230 ATTTGAG
119 -TTGGAA
* *
131237 TTGGATATCCTTCGTCGTGAAGTTGAAATCCAATTTAGAGATGAATGTTGCTTGTGTGCACGATT
1 TTGGATATCCTTCGTCGTGAAGTTGAAATCCAATATAGAGATGTATGTTGCTTGTGTGCACGATT
* * * *
131302 TCCTTCGTCGTAAAGTTGAAACCGCGAGTGGCCCCTTCGTCGTAAAGTTGAGCTTGGAA
66 TCCTTCGTCGTGAAGTTGAAACCGTGGGTGGCCCCTTCGTCGTGAAGTTGAGCTTGGAA
* *
131361 TTGGATATCCTTCATCGAGAAGTTGAAATCCAA
1 TTGGATATCCTTCGTCGTGAAGTTGAAATCCAA
131394 GTAAGTTATA
Statistics
Matches: 210, Mismatches: 53, Indels: 44
0.68 0.17 0.14
Matches are distributed among these distances:
117 4 0.02
118 3 0.01
119 22 0.10
120 1 0.00
121 5 0.02
122 6 0.03
123 12 0.06
124 68 0.32
125 1 0.00
127 1 0.00
128 38 0.18
129 11 0.05
130 5 0.02
131 5 0.02
132 1 0.00
133 22 0.10
134 3 0.01
135 2 0.01
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.33
Consensus pattern (124 bp):
TTGGATATCCTTCGTCGTGAAGTTGAAATCCAATATAGAGATGTATGTTGCTTGTGTGCACGATT
TCCTTCGTCGTGAAGTTGAAACCGTGGGTGGCCCCTTCGTCGTGAAGTTGAGCTTGGAA
Found at i:131337 original size:252 final size:251
Alignment explanation
Indices: 130546--131474 Score: 1157
Period size: 252 Copynumber: 3.7 Consensus size: 251
130536 ACAACGATGA
* * * *
130546 GCACGATTCCCTTCATCGTAAAGTTGAAATCGTGGATGGCCCATTCGTTGTAAAGTTGAGTCTTG
1 GCACGATTCCCTTCGTCGTAAAGTTGAAACCGTGGATGGCCCCTTCGTCGTAAAGTTGAG-CTTG
*
130611 GAATTGGATATCCTTCGTCGTGAAGTTGAAATCC-AGT-A--TG--CTGTTTCGAGGT-CAATAT
65 GAATTGGATATCCTTCGTCGTGAAGTTGAAATCCAAGTAAGTTGTATTGTTTCGA-GTCCAATAT
* * * * * * *
130669 CCTTCATTGTGAAGTTGAAATTGACT-TCGAAACTAGAAAGATTGTTGACATACACTCCTTCTCT
129 CCTCCGTCGTGAAGTTGAAATTGGCTCT-GAAACTGGAAAGTTTGTTGACATACACTCCTT-TTT
* * * *
130733 GAGTTGGATATCCTCCG-CAGTGAAGTTGAAATCCAATCTGGAGATGGATGTTGCTTGTGT
192 GAGTTGGATATCCTTCGTC-GTGAAGTTGAAATCCAATATAGAGATGAATGTTGCTTGTGT
* ** * * **
130793 GTACGATTCCCTTCGTCGCGAAGTTGAAACCGTGGATAGCCCCTTCGTCGTGAAGTTGAGCCAGG
1 GCACGATTCCCTTCGTCGTAAAGTTGAAACCGTGGATGGCCCCTTCGTCGTAAAGTTGAGCTTGG
* * * * * *
130858 GATTGGATATCCTTCGTCGTGAAGTTGAAATCCAAGTAAGTTGTGTTGTTCCGAGACTAATATCA
66 AATTGGATATCCTTCGTCGTGAAGTTGAAATCCAAGTAAGTTGTATTGTTTCGAGTCCAATATCC
* * * * * **
130923 TTCG-CTATGAAGTTGAAATTGACTCTGAAACTGAAAATTTTGTTGACAGGCACTCC--TTTGAG
131 TCCGTC-GTGAAGTTGAAATTGGCTCTGAAACTGGAAAGTTTGTTGACATACACTCCTTTTTGAG
* *
130985 TTGGATATCATTCGTCGTGAAGTTGAAATCCAATATAGAGATGTATGTTGCTTGTGT
195 TTGGATATCCTTCGTCGTGAAGTTGAAATCCAATATAGAGATGAATGTTGCTTGTGT
* * * * *
131042 GCACGATTTCCTTCGTCATGAAGTTGAAACCGTGGGTGGCCCCTTCGTCGTGAAGTTGAGCTTGG
1 GCACGATTCCCTTCGTCGTAAAGTTGAAACCGTGGATGGCCCCTTCGTCGTAAAGTTGAGCTTGG
131107 AATTGGATATCCTTCGTCGTGAAGTTGAAATCCAAGTAAGTTGTATTGTTTCGAGTCCAATATCC
66 AATTGGATATCCTTCGTCGTGAAGTTGAAATCCAAGTAAGTTGTATTGTTTCGAGTCCAATATCC
* * *
131172 TCCGTCGTGAAGTTGAAATTGGTTCTGAAACTGGGAAGTTTATTGACATACACTCCTTATTTGAG
131 TCCGTCGTGAAGTTGAAATTGGCTCTGAAACTGGAAAGTTTGTTGACATACACTCCTT-TTTGAG
*
131237 TTGGATATCCTTCGTCGTGAAGTTGAAATCCAATTTAGAGATGAATGTTGCTTGTGT
195 TTGGATATCCTTCGTCGTGAAGTTGAAATCCAATATAGAGATGAATGTTGCTTGTGT
* *
131294 GCACGATTTCCTTCGTCGTAAAGTTGAAACCG-CGAGTGGCCCCTTCGTCGTAAAGTTGAGCTTG
1 GCACGATTCCCTTCGTCGTAAAGTTGAAACCGTGGA-TGGCCCCTTCGTCGTAAAGTTGAGCTTG
* * * *
131358 GAATTGGATATCCTTCATCGAGAAGTTGAAATCCAAGTAAGTTATATTGCTAT-GAGTCCAATAT
65 GAATTGGATATCCTTCGTCGTGAAGTTGAAATCCAAGTAAGTTGTATTG-TTTCGAGTCCAATAT
* *
131422 CTTCCGTCGTGAAGTTGAAATTGGCTCTGGAACTGGGAAATTGTTTGTTGACA
129 CCTCCGTCGTGAAGTTGAAATTGGCTCTGAAACT-GGAAA--GTTTGTTGACA
131475 ATCAGCCGCC
Statistics
Matches: 590, Mismatches: 73, Indels: 30
0.85 0.11 0.04
Matches are distributed among these distances:
246 35 0.06
247 54 0.09
248 1 0.00
249 215 0.36
250 4 0.01
251 2 0.00
252 262 0.44
253 7 0.01
255 10 0.02
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (251 bp):
GCACGATTCCCTTCGTCGTAAAGTTGAAACCGTGGATGGCCCCTTCGTCGTAAAGTTGAGCTTGG
AATTGGATATCCTTCGTCGTGAAGTTGAAATCCAAGTAAGTTGTATTGTTTCGAGTCCAATATCC
TCCGTCGTGAAGTTGAAATTGGCTCTGAAACTGGAAAGTTTGTTGACATACACTCCTTTTTGAGT
TGGATATCCTTCGTCGTGAAGTTGAAATCCAATATAGAGATGAATGTTGCTTGTGT
Found at i:131610 original size:110 final size:108
Alignment explanation
Indices: 131410--131668 Score: 398
Period size: 110 Copynumber: 2.4 Consensus size: 108
131400 TATATTGCTA
* * *
131410 TGAGTCCAATAT-CTTCCGTCGTGAAGTTGAAATTGGCTCTG--GAACTGGGAAATTGTTTGTTG
1 TGAGTCCAATATCCTT-CGTTGTGAAGTTGAAATTGGCTCTGAAGAAATGGAAAATTGTTTGTTG
*
131472 ACAATCAGCCGCCCCTTCTTCGTGAAGTTGAGCTTGTGTTGTCT
65 ACAATCAGCCGCCCCTTCGTCGTGAAGTTGAGCTTGTGTTGTCT
* *
131516 TGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAATGAAATTGAAAAGTTGTTTGTT
1 TGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAA-GAAATGGAAAA-TTGTTTGTT
131581 GACAATCAGCCGCCCCTTCGTCGTGAAGTTGAGCTTGTGTTGTCT
64 GACAATCAGCCGCCCCTTCGTCGTGAAGTTGAGCTTGTGTTGTCT
* *
131626 TGGGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAA
1 TGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAA
131669 ATTGGGAAGC
Statistics
Matches: 139, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
106 35 0.25
107 3 0.02
109 8 0.06
110 93 0.67
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.35
Consensus pattern (108 bp):
TGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAGAAATGGAAAATTGTTTGTTGA
CAATCAGCCGCCCCTTCGTCGTGAAGTTGAGCTTGTGTTGTCT
Found at i:142397 original size:26 final size:27
Alignment explanation
Indices: 142346--142400 Score: 69
Period size: 26 Copynumber: 2.0 Consensus size: 27
142336 TAAATTTAAT
142346 TAATAATAAATCGGAAAATTCAATCAAA
1 TAATAATAAA-CGGAAAATTCAATCAAA
*
142374 TAATAATAAA-GGTAAATT-ATATCAAA
1 TAATAATAAACGGAAAATTCA-ATCAAA
142400 T
1 T
142401 GTAATTGCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
25 1 0.04
26 14 0.56
28 10 0.40
ACGTcount: A:0.56, C:0.07, G:0.07, T:0.29
Consensus pattern (27 bp):
TAATAATAAACGGAAAATTCAATCAAA
Found at i:142757 original size:42 final size:42
Alignment explanation
Indices: 142696--142781 Score: 154
Period size: 42 Copynumber: 2.0 Consensus size: 42
142686 TTGAACAACC
142696 GAAAATGTGGGAAGAGGGTTAATTGGCAATAATTTGCTTAGG
1 GAAAATGTGGGAAGAGGGTTAATTGGCAATAATTTGCTTAGG
* *
142738 GAAAATGTGGGAAGGGGGTTAATTGTCAATAATTTGCTTAGG
1 GAAAATGTGGGAAGAGGGTTAATTGGCAATAATTTGCTTAGG
142780 GA
1 GA
142782 GTAAGGAGAT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.33, C:0.05, G:0.34, T:0.29
Consensus pattern (42 bp):
GAAAATGTGGGAAGAGGGTTAATTGGCAATAATTTGCTTAGG
Found at i:144225 original size:80 final size:80
Alignment explanation
Indices: 144092--144248 Score: 314
Period size: 80 Copynumber: 2.0 Consensus size: 80
144082 TTTTATTTCC
144092 CTTTAATTTGGTTTTAAATCCTTTCAGACTGAATGTAGTTTCCCATGTTGATACATAAGTTAAGA
1 CTTTAATTTGGTTTTAAATCCTTTCAGACTGAATGTAGTTTCCCATGTTGATACATAAGTTAAGA
144157 TGACATCTTCCTTCT
66 TGACATCTTCCTTCT
144172 CTTTAATTTGGTTTTAAATCCTTTCAGACTGAATGTAGTTTCCCATGTTGATACATAAGTTAAGA
1 CTTTAATTTGGTTTTAAATCCTTTCAGACTGAATGTAGTTTCCCATGTTGATACATAAGTTAAGA
144237 TGACATCTTCCT
66 TGACATCTTCCT
144249 CCCCTACCCC
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
80 77 1.00
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.42
Consensus pattern (80 bp):
CTTTAATTTGGTTTTAAATCCTTTCAGACTGAATGTAGTTTCCCATGTTGATACATAAGTTAAGA
TGACATCTTCCTTCT
Found at i:160035 original size:26 final size:25
Alignment explanation
Indices: 160004--160060 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 25
159994 AGACATATTG
*
160004 TGCATTTTG-TTACTTTTCTTTACAT
1 TGCATTATGATTACTTTT-TTTACAT
* *
160029 TCGCATTATGATTCCTTTTTTTTCAT
1 T-GCATTATGATTACTTTTTTTACAT
160055 TGCATT
1 TGCATT
160061 CACCTGTCTC
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
25 6 0.22
26 14 0.52
27 7 0.26
ACGTcount: A:0.16, C:0.18, G:0.09, T:0.58
Consensus pattern (25 bp):
TGCATTATGATTACTTTTTTTACAT
Found at i:162338 original size:105 final size:105
Alignment explanation
Indices: 162134--163108 Score: 1551
Period size: 105 Copynumber: 9.4 Consensus size: 105
162124 CAAGAAAAGT
* * *
162134 TGGTTGTCAACAAATAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGA
1 TGGTTGTCAATAAA-CATTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGA
* *
162199 CTCCAGACAACGTAAGTTCAACTTCATGACGAAGGGACCGC
65 CTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGC
* * *
162240 TGGTTGTTAATAAACATTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGGTATTGGAC
1 TGGTTGTCAATAAACATTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGAC
*
162305 TCCAGACAACGCAAGTTCAACTTCATGACGAAGGGACCGC
66 TCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGC
*
162345 TGGTTGTCAACAAACATTT-TCAATTTCAGAGCCAATTTCAACTT--C-AC-----A-ATTGGAC
1 TGGTTGTCAATAAACATTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGAC
162400 TCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGC
66 TCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGC
*
162440 TGGTTGTCAATAAAAATTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGAC
1 TGGTTGTCAATAAACATTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGAC
162505 TCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGC
66 TCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGC
* * *
162545 TGGTTGTCAACAAACAACTTCTCAAATTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGA
1 TGGTTGTCAATAAAC-ATTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGA
*
162610 CTCCAGACAACGCAAGTTCAACTTCATGACGAAGGGACCGC
65 CTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGC
*
162651 TGGTTGTCAATAAACATTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAA-GAGTATTGGA
1 TGGTTGTCAATAAACATTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGA-TATTGGA
162715 CTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGC
65 CTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGC
* *
162756 TGGTTGTCAATAAACATTTCTCAATTTCAGAGCCAATTTCAACTTCACAGCAAAGGATATTGGAC
1 TGGTTGTCAATAAACATTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGAC
*
162821 TCCAGACAACGCAAGTTCAACTTCATGACGAAGGGACCGC
66 TCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGC
*
162861 TGGTTGTCAACAAACATTT-TCAATTTCAGAGCCAATTTCAACTT--C-AC-----A-ATTGGAC
1 TGGTTGTCAATAAACATTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGAC
162916 TCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGC
66 TCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGC
* *
162956 TGGTTGTCAATAAACATTTCTCAATTTCAGAGCCAATTTCAACTTCACAGCAAAGGATATTGGAC
1 TGGTTGTCAATAAACATTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGAC
163021 TCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGC
66 TCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGC
* *
163061 TGGTTGTCAATAAACAATTTCCCAATTTCAGAGTCAATTTCAACTTCA
1 TGGTTGTCAATAAAC-ATTTCTCAATTTCAGAGCCAATTTCAACTTCA
163109 TAGCAAAGGA
Statistics
Matches: 810, Mismatches: 35, Indels: 48
0.91 0.04 0.05
Matches are distributed among these distances:
95 127 0.16
96 51 0.06
98 2 0.00
99 3 0.00
101 3 0.00
102 2 0.00
104 53 0.07
105 424 0.52
106 145 0.18
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (105 bp):
TGGTTGTCAATAAACATTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGAC
TCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGC
Found at i:162507 original size:200 final size:202
Alignment explanation
Indices: 162134--163108 Score: 1407
Period size: 200 Copynumber: 4.7 Consensus size: 202
162124 CAAGAAAAGT
* *
162134 TGGTTGTCAACAAATAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGA
1 TGGTTGTCAACAAA-CA-TTTTCAATTTCAGAGCCAATTTCAACTT-AC-AC--A--ATATTGGA
* *
162199 CTCCAGACAACGTAAGTTCAACTTCATGACGAAGGGACCGCTGGTTGTTAATAAACATTTCCCAA
58 CTCCAGACAACGCAAGTTCAACTTCATGACGAAGGGACCGCTGGTTGTCAATAAACATTTCCCAA
*
162264 TTTCAGAGCCAATTTCAACTTCACAACGAAGGGTATTGGACTCCAGACAACGCAAGTTCAACTTC
123 TTTCAGAGCCAATTTCAACTTCACAACGAA-GATATTGGACTCCAGACAACGCAAGTTCAACTTC
*
162329 ATGACGAAGGGACCGC
187 ACGACGAAGGGACCGC
162345 TGGTTGTCAACAAACATTTTCAATTTCAGAGCCAATTTCAACTT-CAC-A-ATTGGACTCCAGAC
1 TGGTTGTCAACAAACATTTTCAATTTCAGAGCCAATTTCAACTTACACAATATTGGACTCCAGAC
* * *
162407 AACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAAAATTTCTCAATTTCAGAG
66 AACGCAAGTTCAACTTCATGACGAAGGGACCGCTGGTTGTCAATAAACATTTCCCAATTTCAGAG
162472 CCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAA
131 CCAATTTCAACTTCACAACGAA-GATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAA
162537 GGGACCGC
195 GGGACCGC
* *
162545 TGGTTGTCAACAAACAACTTCTCAAATTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGA
1 TGGTTGTCAACAAAC-A-TTTTCAATTTCAGAGCCAATTTCAACTT-AC-AC--A--ATATTGGA
162610 CTCCAGACAACGCAAGTTCAACTTCATGACGAAGGGACCGCTGGTTGTCAATAAACATTTCCCAA
58 CTCCAGACAACGCAAGTTCAACTTCATGACGAAGGGACCGCTGGTTGTCAATAAACATTTCCCAA
162675 TTTCAGAGCCAATTTCAACTTCACAACGAAGAGTATTGGACTCCAGACAACGCAAGTTCAACTTC
123 TTTCAGAGCCAATTTCAACTTCACAACGAAGA-TATTGGACTCCAGACAACGCAAGTTCAACTTC
162740 ACGACGAAGGGACCGC
187 ACGACGAAGGGACCGC
*
162756 TGGTTGTCAATAAACATTTCTCAATTTCAGAGCCAATTTCAACTTCACAGCAAAGGATATTGGAC
1 TGGTTGTCAACAAACATTT-TCAATTTCAGAGCCAATTTCAACTT-ACA-C--A--ATATTGGAC
* *
162821 TCCAGACAACGCAAGTTCAACTTCATGACGAAGGGACCGCTGGTTGTCAACAAACATTT-TCAAT
59 TCCAGACAACGCAAGTTCAACTTCATGACGAAGGGACCGCTGGTTGTCAATAAACATTTCCCAAT
162885 TTCAGAGCCAATTTCAACTT--C-AC----A-ATTGGACTCCAGACAACGCAAGTTCAACTTCAC
124 TTCAGAGCCAATTTCAACTTCACAACGAAGATATTGGACTCCAGACAACGCAAGTTCAACTTCAC
162942 GACGAAGGGACCGC
189 GACGAAGGGACCGC
*
162956 TGGTTGTCAATAAACATTTCTCAATTTCAGAGCCAATTTCAACTTCACAGCAAAGGATATTGGAC
1 TGGTTGTCAACAAACATTT-TCAATTTCAGAGCCAATTTCAACTT-ACA-C--A--ATATTGGAC
*
163021 TCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCCAA
59 TCCAGACAACGCAAGTTCAACTTCATGACGAAGGGACCGCTGGTTGTCAATAAAC-ATTTCCCAA
*
163086 TTTCAGAGTCAATTTCAACTTCA
123 TTTCAGAGCCAATTTCAACTTCA
163109 TAGCAAAGGA
Statistics
Matches: 722, Mismatches: 24, Indels: 43
0.92 0.03 0.05
Matches are distributed among these distances:
200 325 0.45
201 6 0.01
202 50 0.07
204 1 0.00
205 2 0.00
206 4 0.01
207 2 0.00
209 54 0.07
210 104 0.14
211 174 0.24
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (202 bp):
TGGTTGTCAACAAACATTTTCAATTTCAGAGCCAATTTCAACTTACACAATATTGGACTCCAGAC
AACGCAAGTTCAACTTCATGACGAAGGGACCGCTGGTTGTCAATAAACATTTCCCAATTTCAGAG
CCAATTTCAACTTCACAACGAAGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAG
GGACCGC
Found at i:163531 original size:21 final size:21
Alignment explanation
Indices: 163502--163549 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
163492 TTTATATTTC
163502 TATTA-TTATAATTTATTTAT
1 TATTATTTATAATTTATTTAT
*
163522 TATTATTTATAATTTCTTTAT
1 TATTATTTATAATTTATTTAT
163543 T-TTATTT
1 TATTATTT
163550 TTTGTAGGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
20 11 0.42
21 15 0.58
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (21 bp):
TATTATTTATAATTTATTTAT
Found at i:165326 original size:50 final size:52
Alignment explanation
Indices: 165208--165331 Score: 175
Period size: 50 Copynumber: 2.4 Consensus size: 52
165198 CACGTAGGGG
* *
165208 TATAGCGTGGATCAGGTACCGC-ATTATACCTTTACTCCCGACATAATTTTA
1 TATAGCGCGGATCAGGTACCGCGATCATACCTTTACTCCCGACATAATTTTA
* *
165259 TATAGTGCGGGAT-AGGTACCGCGA-CATACCTTTACT-CTGACATAATTTTA
1 TATAGCGC-GGATCAGGTACCGCGATCATACCTTTACTCCCGACATAATTTTA
165309 TATAGCGCGGATCAGGTACCGCG
1 TATAGCGCGGATCAGGTACCGCG
165332 TTTTGTATAA
Statistics
Matches: 65, Mismatches: 5, Indels: 7
0.84 0.06 0.09
Matches are distributed among these distances:
49 4 0.06
50 30 0.46
51 26 0.40
52 5 0.08
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.30
Consensus pattern (52 bp):
TATAGCGCGGATCAGGTACCGCGATCATACCTTTACTCCCGACATAATTTTA
Found at i:166998 original size:18 final size:18
Alignment explanation
Indices: 166943--166990 Score: 96
Period size: 18 Copynumber: 2.7 Consensus size: 18
166933 AGGCGATGGT
166943 GGCATCATATATGGCGGC
1 GGCATCATATATGGCGGC
166961 GGCATCATATATGGCGGC
1 GGCATCATATATGGCGGC
166979 GGCATCATATAT
1 GGCATCATATAT
166991 AGCTGCGGTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (18 bp):
GGCATCATATATGGCGGC
Found at i:168770 original size:20 final size:19
Alignment explanation
Indices: 168742--168780 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
168732 CCTTAAAAAG
*
168742 AGAGTATTTGAGAGAAATTT
1 AGAGAATTTGAGA-AAATTT
168762 AGAGAATTTGAGAAAATTT
1 AGAGAATTTGAGAAAATTT
168781 GGTGTGATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.44, C:0.00, G:0.23, T:0.33
Consensus pattern (19 bp):
AGAGAATTTGAGAAAATTT
Found at i:168997 original size:51 final size:50
Alignment explanation
Indices: 168905--169008 Score: 127
Period size: 51 Copynumber: 2.1 Consensus size: 50
168895 TAGCGCACTT
* * **
168905 CAGGGGCCGCGCTATACCCACGTGGCGCCAGCTCACCGTATAGCACGGTG
1 CAGGGGACGCGCTATACCCACGTGACGCCAAATCACCGTATAGCACGGTG
* * * *
168955 CAGGGGACGCGTTATACCCCACGTGACGCCAAATTATCGTATAGCGCGGTG
1 CAGGGGACGCGCTATA-CCCACGTGACGCCAAATCACCGTATAGCACGGTG
169006 CAG
1 CAG
169009 ATGACGCACT
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
50 14 0.31
51 31 0.69
ACGTcount: A:0.21, C:0.32, G:0.31, T:0.16
Consensus pattern (50 bp):
CAGGGGACGCGCTATACCCACGTGACGCCAAATCACCGTATAGCACGGTG
Found at i:174167 original size:2 final size:2
Alignment explanation
Indices: 174160--174190 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
174150 ATCTTCATCT
174160 GA GA GA GA GA GA GA GA GA GA GA GA G- GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
174191 ATGAGGAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:180795 original size:24 final size:22
Alignment explanation
Indices: 180740--180802 Score: 63
Period size: 22 Copynumber: 2.6 Consensus size: 22
180730 AAAATATATT
180740 TATTAATAATTTTTTAAGATATAA
1 TATT-ATAA-TTTTTAAGATATAA
* *
180764 TATTATAATTTTTATGTTATAA
1 TATTATAATTTTTAAGATATAA
180786 TGATTCATAATATTTTA
1 T-ATT-ATAAT-TTTTA
180803 GCATATCAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
22 13 0.38
23 7 0.21
24 9 0.26
25 5 0.15
ACGTcount: A:0.40, C:0.02, G:0.05, T:0.54
Consensus pattern (22 bp):
TATTATAATTTTTAAGATATAA
Found at i:186908 original size:3 final size:3
Alignment explanation
Indices: 186900--186925 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
186890 CAATTTCGAA
186900 AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AA
186926 TTCAGTCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:187267 original size:18 final size:19
Alignment explanation
Indices: 187232--187268 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
187222 CACGGAATGT
187232 AAGATTACCAGTGGGAATAA
1 AAGATTACCAG-GGGAATAA
187252 AAGATTACCA-GGGAATA
1 AAGATTACCAGGGGAATA
187269 GGATTACTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
20 10 0.59
ACGTcount: A:0.46, C:0.11, G:0.24, T:0.19
Consensus pattern (19 bp):
AAGATTACCAGGGGAATAA
Found at i:187445 original size:14 final size:15
Alignment explanation
Indices: 187413--187444 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
187403 AGTAAATTCT
187413 AAATATTTAAATAAA
1 AAATATTTAAATAAA
*
187428 AAATATTTATATAAA
1 AAATATTTAAATAAA
187443 AA
1 AA
187445 TTCTATTTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (15 bp):
AAATATTTAAATAAA
Found at i:193928 original size:76 final size:76
Alignment explanation
Indices: 193838--193988 Score: 293
Period size: 76 Copynumber: 2.0 Consensus size: 76
193828 AACACCACAT
*
193838 AACTATTAACATGATAGCGTTGCAGAAAGCTCTTTGGAGTAACTATTATCATAAATCAAGAGTTT
1 AACTATTAACATGATAGCATTGCAGAAAGCTCTTTGGAGTAACTATTATCATAAATCAAGAGTTT
193903 AACATAAACTG
66 AACATAAACTG
193914 AACTATTAACATGATAGCATTGCAGAAAGCTCTTTGGAGTAACTATTATCATAAATCAAGAGTTT
1 AACTATTAACATGATAGCATTGCAGAAAGCTCTTTGGAGTAACTATTATCATAAATCAAGAGTTT
193979 AACATAAACT
66 AACATAAACT
193989 TAAAGGGCTT
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
76 74 1.00
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.30
Consensus pattern (76 bp):
AACTATTAACATGATAGCATTGCAGAAAGCTCTTTGGAGTAACTATTATCATAAATCAAGAGTTT
AACATAAACTG
Found at i:197499 original size:30 final size:30
Alignment explanation
Indices: 197448--197529 Score: 83
Period size: 30 Copynumber: 2.7 Consensus size: 30
197438 AACTTTTAAA
**
197448 ATTTGCAATACAGTCCCCCAACACTTAATCC
1 ATTTGCAATATGGT-CCCCAACACTTAATCC
* * *
197479 ATTTGCAATATGGTCCCCAACATTTAGTTC
1 ATTTGCAATATGGTCCCCAACACTTAATCC
* * *
197509 GTTTGCAATATGCTCCTCAAC
1 ATTTGCAATATGGTCCCCAAC
197530 GTAACTGTTG
Statistics
Matches: 43, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
30 31 0.72
31 12 0.28
ACGTcount: A:0.28, C:0.29, G:0.11, T:0.32
Consensus pattern (30 bp):
ATTTGCAATATGGTCCCCAACACTTAATCC
Found at i:199592 original size:20 final size:20
Alignment explanation
Indices: 199567--199660 Score: 89
Period size: 20 Copynumber: 4.7 Consensus size: 20
199557 GATTATGTAT
199567 TATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
199587 TATCGCGTTGCGAAAGTAAG
1 TATCGCGTTGCGAAAGTCAG
* *** * *
199607 TATCTCGTTGCGATTTTTTAT
1 TATCGCGTTGCGA-AAGTCAG
* *
199628 TATCGCATTGCGATAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
199648 TATCGCATTGCGA
1 TATCGCGTTGCGA
199661 TTTTCCCAAT
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
20 47 0.78
21 13 0.22
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.34
Consensus pattern (20 bp):
TATCGCGTTGCGAAAGTCAG
Found at i:199661 original size:20 final size:20
Alignment explanation
Indices: 199547--199661 Score: 88
Period size: 20 Copynumber: 5.7 Consensus size: 20
199537 TTTTTTTAAA
*
199547 ATCGCATTGCGATTATGT-ATT
1 ATCGCATTGCGA-TA-GTCAGT
* *
199568 ATCGCGTTGCGAAAGTCAGT
1 ATCGCATTGCGATAGTCAGT
* * *
199588 ATCGCGTTGCGAAAGTAAGT
1 ATCGCATTGCGATAGTCAGT
* * ** * *
199608 ATCTCGTTGCGATTTTTTATT
1 ATCGCATTGCGA-TAGTCAGT
199629 ATCGCATTGCGATAGTCAGT
1 ATCGCATTGCGATAGTCAGT
199649 ATCGCATTGCGAT
1 ATCGCATTGCGAT
199662 TTTCCCAATT
Statistics
Matches: 76, Mismatches: 16, Indels: 5
0.78 0.16 0.05
Matches are distributed among these distances:
19 2 0.03
20 50 0.66
21 24 0.32
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.36
Consensus pattern (20 bp):
ATCGCATTGCGATAGTCAGT
Found at i:199679 original size:21 final size:21
Alignment explanation
Indices: 199650--199742 Score: 100
Period size: 20 Copynumber: 4.5 Consensus size: 21
199640 ATAGTCAGTA
199650 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
* * **
199671 TCGCGTTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCCAAT
199691 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
* * **
199712 TCGCGTTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCCAAT
199732 TCGCATTGCGA
1 TCGCATTGCGA
199743 ATTGGGAAAA
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 32 0.55
21 26 0.45
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.40
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCCAAT
Found at i:199680 original size:41 final size:41
Alignment explanation
Indices: 199589--199723 Score: 139
Period size: 41 Copynumber: 3.3 Consensus size: 41
199579 AAAGTCAGTA
* * * ** *
199589 TCGCGTTGCGAAAGTAAGTATCTCGTTGCGATTTT-TTATT
1 TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
* *
199629 ATCGCATTGCGATAGTCAGTATCGCATTGCGATTTTCCCAAT
1 -TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
* **
199671 TCGCGTTGCGAT-TTACTTATTCGCATTGCGATTTTCCCAAT
1 TCGCGTTGCGATAGTAAGTA-TCGCATTGCGATTTTCCCAAT
199712 TCGCGTTGCGAT
1 TCGCGTTGCGAT
199724 TTACTTATTC
Statistics
Matches: 79, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
40 3 0.04
41 74 0.94
42 2 0.03
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.39
Consensus pattern (41 bp):
TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
Found at i:199724 original size:41 final size:41
Alignment explanation
Indices: 199650--199742 Score: 186
Period size: 41 Copynumber: 2.3 Consensus size: 41
199640 ATAGTCAGTA
199650 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
199691 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
199732 TCGCATTGCGA
1 TCGCATTGCGA
199743 ATTGGGAAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.40
Consensus pattern (41 bp):
TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
Found at i:201451 original size:31 final size:31
Alignment explanation
Indices: 201413--201488 Score: 127
Period size: 31 Copynumber: 2.5 Consensus size: 31
201403 TCGGTCTATG
*
201413 GCCGACCACCGCTCCGGCGAAAT-CTCGCCGC
1 GCCGACCACCGCTCCGGCAAAATCCT-GCCGC
201444 GCCGACCACCGCTCCGGCAAAATCCTGCCGC
1 GCCGACCACCGCTCCGGCAAAATCCTGCCGC
201475 GCCGACCACCGCTC
1 GCCGACCACCGCTC
201489 GATGGCCGGA
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
31 41 0.95
32 2 0.05
ACGTcount: A:0.17, C:0.50, G:0.24, T:0.09
Consensus pattern (31 bp):
GCCGACCACCGCTCCGGCAAAATCCTGCCGC
Found at i:201645 original size:31 final size:31
Alignment explanation
Indices: 201603--201666 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 31
201593 GAACAAGTTT
*
201603 TCCGGCGAAAT-CTCGCCGCGCCGACCACCGC
1 TCCGGCAAAATCCT-GCCGCGCCGACCACCGC
201634 TCCGGCAAAATCCTGCCGCGCCGACCACCGC
1 TCCGGCAAAATCCTGCCGCGCCGACCACCGC
201665 TC
1 TC
201667 GATGGCCGGA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 29 0.94
32 2 0.06
ACGTcount: A:0.17, C:0.48, G:0.23, T:0.11
Consensus pattern (31 bp):
TCCGGCAAAATCCTGCCGCGCCGACCACCGC
Found at i:201724 original size:178 final size:180
Alignment explanation
Indices: 201425--201782 Score: 702
Period size: 178 Copynumber: 2.0 Consensus size: 180
201415 CGACCACCGC
201425 TCCGGCGAAATCTCGCCGCGCCGACCACCGCTCCGGCAAAATCCTGCCGCGCCGACCACCGCTCG
1 TCCGGCGAAATCTCGCCGCGCCGACCACCGCTCCGGCAAAATCCTGCCGCGCCGACCACCGCTCG
201490 ATGGCCGGAAAAAACAAATCGCCCTCTTTCGAATCCTTCTAACCCTCCGAGGTCAAAA-CGA-CC
66 ATGGCCGGAAAAAACAAATCGCCCTCTTTCGAATCCTTCTAACCCTCCGAGGTCAAAACCGACCC
201553 CCAAACCCCCATAATAAGCCTTACTCGACGTAGATCTAACGAACAAGTTT
131 CCAAACCCCCATAATAAGCCTTACTCGACGTAGATCTAACGAACAAGTTT
201603 TCCGGCGAAATCTCGCCGCGCCGACCACCGCTCCGGCAAAATCCTGCCGCGCCGACCACCGCTCG
1 TCCGGCGAAATCTCGCCGCGCCGACCACCGCTCCGGCAAAATCCTGCCGCGCCGACCACCGCTCG
201668 ATGGCCGGAAAAAACAAATCGCCCTCTTTCGAATCCTTCTAACCCTCCGAGGTCAAAACCGACCC
66 ATGGCCGGAAAAAACAAATCGCCCTCTTTCGAATCCTTCTAACCCTCCGAGGTCAAAACCGACCC
201733 CCAAACCCCCATAATAAGCCTTACTCGACGTAGATCTAACGAACAAGTTT
131 CCAAACCCCCATAATAAGCCTTACTCGACGTAGATCTAACGAACAAGTTT
201783 CGGGTTTTTT
Statistics
Matches: 178, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
178 123 0.69
179 3 0.02
180 52 0.29
ACGTcount: A:0.27, C:0.38, G:0.18, T:0.17
Consensus pattern (180 bp):
TCCGGCGAAATCTCGCCGCGCCGACCACCGCTCCGGCAAAATCCTGCCGCGCCGACCACCGCTCG
ATGGCCGGAAAAAACAAATCGCCCTCTTTCGAATCCTTCTAACCCTCCGAGGTCAAAACCGACCC
CCAAACCCCCATAATAAGCCTTACTCGACGTAGATCTAACGAACAAGTTT
Found at i:202587 original size:37 final size:38
Alignment explanation
Indices: 202441--202783 Score: 220
Period size: 39 Copynumber: 9.1 Consensus size: 38
202431 ATAATATAAA
*
202441 ATTATATG-TTTC-AAAATTGTTTTAAAAA--AT-TAT
1 ATTATATGTTTTCAAAAAATGTTTTAAAAACTATATAT
* *
202474 ATTATATGTTTTCAAAAGTATATTTTTTTAAAATCTATATAT
1 ATTATATGTTTTCAAAA--A-A-TGTTTTAAAAACTATATAT
* * * *
202516 AATATAGGTTTTC-AAAAATATTTTCAAAA-T-TATAT
1 ATTATATGTTTTCAAAAAATGTTTTAAAAACTATATAT
202551 ATTATATGTTTTC-AAAAATGTTTTAAAAACTATATAT
1 ATTATATGTTTTCAAAAAATGTTTTAAAAACTATATAT
* *
202588 -TATATAT-ATTTCAAAAAATTGTTTTCAAAACTATATAT
1 AT-TATATGTTTTCAAAAAA-TGTTTTAAAAACTATATAT
* * *
202626 -TATATACGTTTTCAAAAAATATTTTCTAAAACTATATAT
1 AT-TATATGTTTTCAAAAAATGTTTT-AAAAACTATATAT
* * *
202665 -TATATATATTTTCTAAATAT-TTTCT-AAAA-T-TATAT
1 AT-TATATGTTTTCAAAAAATGTTT-TAAAAACTATATAT
* *
202700 ATTATATACGTTTTCAAAAAAAAAGTTTTTCAAAACTATATAT
1 ATTATAT--GTTTTC--AAAAAATG-TTTTAAAAACTATATAT
* * *
202743 -TATATAT-TTTTTAAAAAATATTTTCTAAAACTATATAT
1 AT-TATATGTTTTCAAAAAATGTTTT-AAAAACTATATAT
202781 ATT
1 ATT
202784 GAAAAATACG
Statistics
Matches: 250, Mismatches: 30, Indels: 55
0.75 0.09 0.16
Matches are distributed among these distances:
33 8 0.03
34 4 0.02
35 43 0.17
36 9 0.04
37 37 0.15
38 52 0.21
39 54 0.22
40 5 0.02
41 12 0.05
42 16 0.06
43 10 0.04
ACGTcount: A:0.43, C:0.06, G:0.03, T:0.47
Consensus pattern (38 bp):
ATTATATGTTTTCAAAAAATGTTTTAAAAACTATATAT
Found at i:202645 original size:39 final size:37
Alignment explanation
Indices: 202441--202780 Score: 297
Period size: 38 Copynumber: 9.1 Consensus size: 37
202431 ATAATATAAA
* * *
202441 ATTATAT-G-TTTC-AAAATTGTTTTAAAAAAT-TAT
1 ATTATATAGTTTTCAAAAAATGTTTTCAAAACTATAT
* *
202474 ATTATAT-GTTTTCAAAAGTATATTTTTTTAAAATCTATAT
1 ATTATATAGTTTTCAAAA--A-ATGTTTTCAAAA-CTATAT
* * *
202514 ATAATATAGGTTTTC-AAAAATATTTTCAAAATTATAT
1 ATTATATA-GTTTTCAAAAAATGTTTTCAAAACTATAT
*
202551 ATTATAT-GTTTTC-AAAAATGTTTTAAAAACTATAT
1 ATTATATAGTTTTCAAAAAATGTTTTCAAAACTATAT
202586 ATTATATA-TATTTCAAAAAATTGTTTTCAAAACTATAT
1 ATTATATAGT-TTTCAAAAAA-TGTTTTCAAAACTATAT
*
202624 ATTATATACGTTTTCAAAAAATATTTTCTAAAACTATAT
1 ATTATATA-GTTTTCAAAAAATGTTTTC-AAAACTATAT
* * * *
202663 ATTATATATATTTTC--TAAATATTTTCTAAAATTATAT
1 ATTATATA-GTTTTCAAAAAATGTTTTC-AAAACTATAT
*
202700 ATTATATACGTTTTCAAAAAAAAAGTTTTTCAAAACTATAT
1 ATTATATA-GTTTTC--AAAAAATG-TTTTCAAAACTATAT
* * *
202741 ATTATATATTTTTTAAAAAATATTTTCTAAAACTATAT
1 ATTATATAGTTTTCAAAAAATGTTTTC-AAAACTATAT
202779 AT
1 AT
202781 ATTGAAAAAT
Statistics
Matches: 257, Mismatches: 28, Indels: 39
0.79 0.09 0.12
Matches are distributed among these distances:
33 8 0.03
34 4 0.02
35 36 0.14
36 4 0.02
37 55 0.21
38 67 0.26
39 35 0.14
40 14 0.05
41 23 0.09
42 11 0.04
ACGTcount: A:0.43, C:0.06, G:0.04, T:0.47
Consensus pattern (37 bp):
ATTATATAGTTTTCAAAAAATGTTTTCAAAACTATAT
Found at i:209568 original size:13 final size:13
Alignment explanation
Indices: 209550--209574 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
209540 TCCTAAAATT
209550 TAAATTTTTTATA
1 TAAATTTTTTATA
209563 TAAATTTTTTAT
1 TAAATTTTTTAT
209575 TTTTATTGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
TAAATTTTTTATA
Found at i:211484 original size:163 final size:163
Alignment explanation
Indices: 211220--211548 Score: 658
Period size: 163 Copynumber: 2.0 Consensus size: 163
211210 GGCATAGCAT
211220 AAACGACCATTAACATAGACCTGCTTGCCTGCCATTTTCATTTCCCCAGTCTCTCTCTCTCTCTC
1 AAACGACCATTAACATAGACCTGCTTGCCTGCCATTTTCATTTCCCCAGTCTCTCTCTCTCTCTC
211285 TTTCTCAAGGGGAAGGAAAGGGCTCTCTTCATCCTTAAATACTCAGCTTTCCCTTTTTACTTACT
66 TTTCTCAAGGGGAAGGAAAGGGCTCTCTTCATCCTTAAATACTCAGCTTTCCCTTTTTACTTACT
211350 TTTCCCATCATCCCCATGAAATTAAAAATAAAC
131 TTTCCCATCATCCCCATGAAATTAAAAATAAAC
211383 AAACGACCATTAACATAGACCTGCTTGCCTGCCATTTTCATTTCCCCAGTCTCTCTCTCTCTCTC
1 AAACGACCATTAACATAGACCTGCTTGCCTGCCATTTTCATTTCCCCAGTCTCTCTCTCTCTCTC
211448 TTTCTCAAGGGGAAGGAAAGGGCTCTCTTCATCCTTAAATACTCAGCTTTCCCTTTTTACTTACT
66 TTTCTCAAGGGGAAGGAAAGGGCTCTCTTCATCCTTAAATACTCAGCTTTCCCTTTTTACTTACT
211513 TTTCCCATCATCCCCATGAAATTAAAAATAAAC
131 TTTCCCATCATCCCCATGAAATTAAAAATAAAC
211546 AAA
1 AAA
211549 ACTCTCTGCT
Statistics
Matches: 166, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
163 166 1.00
ACGTcount: A:0.26, C:0.30, G:0.10, T:0.33
Consensus pattern (163 bp):
AAACGACCATTAACATAGACCTGCTTGCCTGCCATTTTCATTTCCCCAGTCTCTCTCTCTCTCTC
TTTCTCAAGGGGAAGGAAAGGGCTCTCTTCATCCTTAAATACTCAGCTTTCCCTTTTTACTTACT
TTTCCCATCATCCCCATGAAATTAAAAATAAAC
Found at i:223606 original size:23 final size:23
Alignment explanation
Indices: 223580--223645 Score: 80
Period size: 23 Copynumber: 2.9 Consensus size: 23
223570 CACCACAGCT
*
223580 CGTATAATTGCACCGAAGTGTCA
1 CGTAGAATTGCACCGAAGTGTCA
*
223603 CGTAGAATTGCACC-AGAGTGTCG
1 CGTAGAATTGCACCGA-AGTGTCA
* *
223626 CGTAGAATTGTACCGTAGTG
1 CGTAGAATTGCACCGAAGTG
223646 CCATATAATA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
22 1 0.03
23 36 0.97
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (23 bp):
CGTAGAATTGCACCGAAGTGTCA
Done.