genome.fa.s2539.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002539.1 Hibiscus syriacus cultivar Beakdansim tig00005155_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64715

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3482--3556	35	2.1	36	95	2	134	32	10	14	42	1.80
7391--7445	20	2.8	21	83	8	71	32	20	23	23	1.98
8154--8208	23	2.5	22	88	8	78	21	18	30	29	1.97
14534--14585	19	2.7	19	82	5	52	46	11	13	28	1.78
14554--14595	19	2.3	19	87	4	59	40	7	19	33	1.78
14652--14699	19	2.5	19	73	10	53	54	2	25	18	1.55
17722--17866	29	5.0	29	83	4	166	35	22	6	35	1.81
17896--17949	19	2.8	19	85	0	72	20	31	31	16	1.95
25119--25278	29	5.6	29	78	5	148	34	22	6	36	1.81
25120--25237	28	4.2	27	78	7	94	33	20	6	39	1.79
25273--25311	18	2.2	18	90	0	60	10	25	46	17	1.80
25419--25452	11	3.2	11	83	8	52	44	23	2	29	1.68
36983--37035	8	6.6	8	75	16	56	71	0	0	28	0.86
36980--37032	3	17.3	3	84	11	56	71	0	0	28	0.86
37376--37892	84	6.2	82	79	7	524	24	19	25	30	1.98
37376--37894	165	3.1	165	82	6	609	24	19	25	30	1.98
42153--42241	33	2.6	36	75	16	93	66	0	3	30	1.08
42574--42658	33	2.6	34	90	5	122	28	14	18	38	1.90
42588--42658	33	2.2	33	97	0	133	26	11	21	40	1.87
42705--42773	3	22.7	3	88	11	97	68	0	0	31	0.90
43029--43081	21	2.5	21	81	6	72	20	26	18	33	1.96
43056--43145	41	2.2	41	83	0	108	35	17	21	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43071--43158	20	4.3	20	91	4	131	40	15	22	20	1.90
43071--43158	41	2.1	41	89	4	133	40	15	22	20	1.90
43152--43202	20	2.5	20	100	0	102	25	31	25	17	1.97
43172--43300	41	3.2	41	76	2	134	36	25	14	23	1.93
43214--43280	20	3.3	20	85	0	89	31	28	11	28	1.92
43779--43837	20	3.0	20	87	0	73	15	18	22	44	1.87
43974--44028	25	2.2	24	78	15	58	20	9	18	52	1.71
45152--45199	18	2.7	18	93	0	87	27	45	12	14	1.81
45731--45797	20	3.4	20	81	2	73	38	23	22	14	1.92
45731--45833	19	5.6	19	75	14	72	41	23	21	13	1.88
45878--45964	20	4.4	20	88	1	122	14	24	24	36	1.93
45891--45990	20	5.1	19	85	6	83	21	20	25	34	1.97
45891--45984	40	2.4	40	83	5	111	18	21	25	35	1.95
46336--46403	21	3.3	20	74	8	66	25	41	14	19	1.89
46326--46415	40	2.2	42	84	4	121	22	41	14	22	1.89
47818--47856	14	2.8	14	84	0	51	35	0	17	46	1.49
47975--48025	14	3.3	14	76	23	57	47	19	21	11	1.81
47985--48021	19	1.9	19	88	0	56	51	16	21	10	1.74
48052--48147	20	4.8	20	77	10	88	17	19	20	41	1.90
48054--48135	40	2.1	40	83	2	103	18	20	19	41	1.91
48376--48419	20	2.2	20	100	0	88	29	20	27	22	1.99
50154--50284	19	7.7	19	67	23	103	42	19	23	13	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50154--50280	33	3.8	33	90	4	211	42	19	23	14	1.88
50155--50287	66	2.0	66	98	0	257	41	19	23	15	1.90
50309--50355	19	2.5	19	89	0	67	12	19	19	48	1.80
50462--50498	14	2.6	14	91	0	65	45	24	0	29	1.53
51842--51908	21	3.2	21	68	4	55	19	20	35	23	1.95
52180--52359	91	2.0	89	89	7	272	47	18	12	21	1.81
54035--54124	33	2.5	33	82	10	108	44	20	23	12	1.84
54035--54146	19	6.1	19	77	14	110	44	19	23	12	1.84
54817--54867	20	2.5	20	84	6	59	21	23	17	37	1.94
54857--54909	21	2.5	22	81	6	74	33	18	26	20	1.96
56517--56583	25	2.7	25	77	9	64	41	0	2	55	1.15
57031--57152	21	6.1	19	72	19	72	76	4	4	13	1.12
57042--57224	18	9.9	18	68	17	83	75	3	5	14	1.12
57160--57227	31	2.2	31	84	10	86	79	2	5	11	1.02
57180--57238	20	2.8	21	79	10	66	77	1	6	13	1.03
57307--57348	14	3.1	14	82	3	50	71	0	2	26	0.98
59231--59488	83	3.1	84	83	4	339	24	17	24	33	1.96
59552--59644	31	2.8	32	80	6	107	32	8	17	41	1.79
59698--60143	36	12.8	36	75	15	357	41	12	19	26	1.86
59769--59957	100	1.9	101	90	3	301	40	11	20	27	1.87
59666--60008	172	1.9	177	86	8	486	40	12	20	26	1.87
59918--59969	16	2.9	17	75	13	52	44	15	19	21	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59698--60143	213	2.1	206	84	7	562	41	12	19	26	1.86
60075--60143	35	1.9	37	85	8	99	40	11	18	28	1.86
60119--60160	15	2.7	16	82	14	52	40	14	21	23	1.90

Tables:   1

The End!