genome.fa.s254.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000254.1 Hibiscus syriacus cultivar Beakdansim tig00000465_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114919

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5104--5136	17	1.9	17	100	0	66	60	6	6	27	1.44
7129--7217	30	3.0	29	75	15	83	24	11	2	61	1.40
7188--7217	14	2.1	14	93	0	51	33	10	0	56	1.32
8812--9202	194	2.0	195	99	0	775	28	12	11	47	1.76
9735--9792	30	1.9	30	92	0	98	41	17	25	15	1.89
9998--10045	14	3.6	14	75	11	55	18	10	6	64	1.45
10350--10405	29	1.9	29	100	0	112	35	14	17	32	1.90
12398--12531	72	1.9	72	91	0	223	24	20	18	35	1.95
15290--15343	27	2.0	27	100	0	108	40	11	22	25	1.87
15595--15661	35	1.9	35	85	11	93	31	10	23	34	1.89
17174--17249	22	3.5	22	80	7	73	35	14	11	38	1.83
17595--18044	112	3.9	113	85	5	534	40	16	18	25	1.91
27541--27627	35	2.5	34	78	12	88	56	10	6	26	1.58
29915--29956	18	2.4	17	88	4	57	59	2	4	33	1.31
30462--30554	33	2.9	32	80	16	111	52	0	1	46	1.07
30471--30525	18	3.2	18	72	12	53	54	0	0	45	0.99
30462--30550	30	2.9	30	83	11	92	51	0	1	47	1.08
33589--33618	15	1.9	16	93	6	53	56	0	0	43	0.99
34213--34269	4	13.2	4	78	14	60	68	3	5	22	1.25
34201--34252	27	1.9	27	88	7	79	67	5	7	19	1.36
34300--34333	2	17.0	2	93	0	59	47	0	0	52	1.00
34295--34339	14	3.2	14	87	0	63	42	2	2	53	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34531--34555	12	2.1	12	100	0	50	44	0	0	56	0.99
35910--35965	3	18.7	3	96	0	103	69	30	0	0	0.89
35964--35996	3	11.0	3	100	0	66	66	0	0	33	0.92
35995--36025	3	10.3	3	100	0	62	35	0	0	64	0.94
37831--37899	30	2.3	30	87	5	95	24	21	18	34	1.96
38221--38270	24	2.1	23	88	3	73	52	4	8	36	1.50
43691--43750	27	2.3	26	85	8	77	65	8	6	20	1.43
43730--43767	4	9.2	4	88	5	58	71	0	2	26	1.00
44026--44085	2	29.5	2	96	3	111	50	1	0	48	1.11
44204--44261	29	2.0	29	82	0	71	67	5	12	15	1.39
46793--46820	12	2.3	12	100	0	56	7	7	53	32	1.55
49497--49657	66	2.5	65	96	1	295	27	14	15	42	1.85
51469--51522	25	2.2	25	90	6	83	31	9	3	55	1.49
51452--52410	341	2.9	331	90	4	1450	28	13	8	49	1.72
55828--55852	6	4.2	6	100	0	50	32	16	52	0	1.44
72525--72593	20	3.5	20	75	9	52	33	15	10	40	1.81
72562--72602	20	2.0	20	85	0	55	34	14	12	39	1.84
73220--73251	14	2.3	14	94	0	55	12	18	25	43	1.85
73219--73284	34	1.9	34	90	0	105	15	15	22	46	1.82
73234--73273	20	2.0	20	90	0	62	15	15	20	50	1.79
74787--74934	42	3.5	42	87	0	197	26	37	14	20	1.92
75030--75073	21	2.1	21	91	0	70	22	13	29	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75107--75199	21	4.4	21	75	5	98	16	16	33	34	1.91
75309--75346	4	9.5	4	88	0	58	26	0	2	71	1.00
75512--75562	21	2.4	21	93	0	84	21	37	17	23	1.94
75530--75587	21	2.8	21	86	0	71	20	39	17	22	1.92
77031--77067	13	2.8	13	87	0	56	18	54	13	13	1.71
77191--77216	12	2.2	12	100	0	52	23	50	19	7	1.73
77615--77645	14	2.1	15	94	5	55	9	12	25	51	1.70
77905--77940	18	2.0	18	94	0	63	16	2	25	55	1.55
80204--80257	24	2.2	24	93	0	90	40	20	18	20	1.91
81169--81323	20	7.7	20	73	9	102	27	12	27	32	1.93
81615--81662	22	2.2	22	84	0	60	50	20	10	18	1.76
82411--82477	33	2.0	33	83	11	84	38	19	8	32	1.83
87918--87986	23	3.0	23	80	0	84	31	24	24	18	1.98
87995--88322	103	3.2	103	95	0	584	37	24	12	25	1.90
88828--88868	19	2.2	19	87	12	59	29	21	17	31	1.96
88893--88948	21	2.7	21	94	0	94	28	23	26	21	1.99
94965--95033	23	3.0	23	78	0	84	31	24	24	18	1.98
95085--95360	103	2.7	103	94	0	498	36	24	13	25	1.92
101779--101820	21	2.0	21	95	0	75	26	28	21	23	1.99
101927--101987	19	3.2	19	85	0	77	36	13	14	36	1.85
102048--102116	31	2.2	31	85	12	97	43	13	7	36	1.71
102057--102116	29	2.0	29	90	6	93	43	15	6	35	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110798--110915	31	3.6	33	76	10	93	48	2	3	45	1.32
110829--110953	31	4.0	31	77	4	101	47	4	2	46	1.34
110829--110915	21	4.1	21	67	11	70	49	2	2	45	1.27

Tables:   1

The End!