Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002540.1 Hibiscus syriacus cultivar Beakdansim tig00005157_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91687

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3439--3476
18
2.1
18
85
9
51
55
7
10
26
1.61
5058--5113
2
28.5
2
96
3
105
51
0
0
48
1.00
8351--8376
12
2.2
12
100
0
52
34
7
42
15
1.75
10647--10686
10
4.0
10
90
0
62
35
12
0
52
1.39
10768--10817
20
2.5
20
86
0
73
40
12
0
48
1.40
10768--10817
10
5.0
10
80
0
55
40
12
0
48
1.40
11197--11457
135
1.9
138
89
7
411
37
2
12
47
1.54
11687--11738
24
2.2
24
89
0
77
34
9
7
48
1.65
40516--40568
20
2.7
19
91
2
79
43
11
11
33
1.76
40520--40572
19
2.8
19
88
5
72
47
11
9
32
1.71
46595--46623
15
1.9
15
100
0
58
44
6
6
41
1.58
50066--50143
35
2.3
34
80
10
88
30
0
5
64
1.15
50284--50362
34
2.4
33
83
8
90
39
0
1
59
1.06
50274--50362
34
2.7
31
79
6
88
39
0
2
58
1.11
50501--50554
17
3.2
17
72
0
54
31
0
3
64
1.11
52051--52111
21
2.9
21
87
0
86
19
34
24
21
1.96
52633--52739
34
3.1
34
87
2
153
54
4
3
37
1.39
52848--52877
14
2.1
14
93
0
51
60
10
0
30
1.30
53729--53769
8
5.2
8
82
5
57
36
29
0
34
1.58
57610--57644
14
2.5
14
100
0
70
28
5
0
65
1.15
57733--57777
19
2.4
19
82
14
65
20
28
37
13
1.90
58064--58097
9
3.9
9
84
7
52
35
0
2
61
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58057--58101
17
2.8
16
90
6
72
33
0
2
64
1.06
59754--59829
23
3.3
23
94
0
134
30
38
22
9
1.85
65468--65495
3
9.3
3
100
0
56
32
0
0
67
0.91
81801--81829
2
14.5
2
100
0
58
48
0
0
51
1.00
82634--82736
53
1.9
53
83
11
131
24
19
16
39
1.91
88815--89178
184
2.0
186
91
1
588
33
16
20
28
1.95
89682--89824
11
12.6
11
71
12
103
30
21
22
25
1.99
89693--89837
23
6.3
23
91
0
193
31
21
21
26
1.98
91530--91571
21
2.0
21
100
0
84
42
14
9
33
1.78

Tables:   1

The End!