genome.fa.s2541.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002541.1 Hibiscus syriacus cultivar Beakdansim tig00005160_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55650

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6444--6653	104	2.0	105	96	0	386	41	15	24	17	1.89
12554--12595	22	1.9	22	90	0	66	57	19	7	16	1.62
12598--12660	23	2.7	23	82	0	72	36	14	17	31	1.90
13156--13245	47	1.9	47	90	2	146	35	17	8	37	1.81
14064--14113	25	2.0	25	92	0	82	38	12	0	50	1.40
18691--18764	2	37.0	2	100	0	148	50	0	0	50	1.00
21037--21123	42	2.1	42	97	0	165	18	47	12	21	1.82
26719--26754	10	3.6	10	88	0	54	41	30	0	27	1.56
28201--28357	64	2.5	64	82	6	176	33	20	17	28	1.95
28812--29127	150	2.1	150	95	1	573	26	17	21	34	1.96
29095--29139	23	2.0	23	86	0	63	20	26	26	26	1.99
30432--30530	42	2.4	42	96	3	182	45	16	12	26	1.82
31143--31193	15	3.4	15	78	5	50	31	11	19	37	1.88
31087--31205	45	2.6	45	78	4	123	34	10	17	37	1.84
31283--31379	23	4.2	23	73	5	88	17	20	24	37	1.94
31283--31379	46	2.1	46	82	0	122	17	20	24	37	1.94
31291--31392	23	4.4	23	74	7	82	16	21	27	34	1.95
31373--31429	24	2.4	24	88	8	80	19	22	22	35	1.96
38212--38307	35	2.7	35	86	0	138	31	2	26	40	1.67
45011--45057	25	1.9	24	83	12	60	31	4	0	63	1.13
45547--45571	13	1.9	13	100	0	50	16	20	0	64	1.30
46314--46347	15	2.2	15	89	5	50	29	0	2	67	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46660--46691	15	2.2	15	94	5	57	50	0	0	50	1.00
47283--47311	15	2.0	15	93	6	51	44	6	6	41	1.58
47318--47355	16	2.4	16	86	4	60	39	7	0	52	1.31
51954--52036	29	2.8	29	85	8	114	37	10	2	49	1.51
52103--52270	84	2.0	84	100	0	336	33	13	15	38	1.86

Tables:   1

The End!